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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00026284 ID=TCONS_00026284|Name=TCONS_00026284|organism=Clytia hemisphaerica|type=transcript|length=277bp
gttttagggaaaaatacttagaaaaatgAGCCGGCGAATTGTTGGGAAGA
GTTTATCATCACCTATCAGAAGAATAACATCAGACAAGGTCACAGAACAC
AGGACAGAAATCACGTTTGACAAGCTGGAGAAGAACTGGTTTCGAGCAGC
ATTGAGATGTGATCTTGAGCAATTGAAAAGATATTACGCCAAAGATCATC
TTTTACTTGATAAGAAAGACAATTTCACTGGGTTTGTCATCAGCGAAAAG
GAAAATCTTCAACCTTCAACCGGCTTC Run BLAST on NCBI transcript from alignment at sc0000566:181321..184398+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00026284 ID=TCONS_00026284|Name=TCONS_00026284|organism=Clytia hemisphaerica|type=transcript|length=3078bp|location=Sequence derived from alignment at sc0000566:181321..184398+ (Clytia hemisphaerica)
gttttagggaaaaatacttagaaaaatgAGCCGGCGAATTGTTGGGAAGA
GTTTATCATCACCTATCAGAAGAATAACATCAGACAAGGTCACAGAACAC
AGGACAGAAATCACGGTATGgttttatgttgattttttttcctgacagta
tttcagtgaagtgaaaaaagattTGCCACAGGAATTGCACTCCTAGAAAA
TTGTTCcctgaagaaaaaattgaacaaatttccgggaatgttatttttaa
atttaaaccAAGGGTATTGGTTATTTTGACATGTCGCCATTTTTCCACTT
CTGATTAGAGAGTGATAACGGGAAACATACGTTTGAACCCTGCTCAGAAA
GATGAGGGTTTGAGCTCCACCTAAATTGACCATCGCAGTACGTTCAATCT
ACTCTCGAATGCTAGTTTATTTGAAATGATATTTTTCTACTTCTATCGGG
TTAAAGACGGGTTTGGAgttgattttcaatttcatacATTGTCGACTTTG
ACCTCATCTTTTTGACCCCAAATGTATCCCATAATCGCAAAGATTTTCAT
GATCAACCCACACCCATAGAAACGCTTGCAAAATATCACTGCTCTTTTTT
TCTTCCAACCCTCAGAGAAAATCCGGCCTCACTCTTTCTTCCTCATGTTT
TGGTCAATTCTCAATAGTATGCTGACAATAAGACATCCAGCctcaatttg
aatatcttttttgtTCCATAACCACAAATTATTCTATATGCCCCATCcat
atttcattgaaaatttctaaaatggaactaaattttttataagaaaattc
aaaattaattgttttctcttcaaattaaaagatagctttgaaaaaaacga
aaacctTTTTAGGTCCTGGTCATGGCAAATTACATTGCAAGCCTCTTTCT
TTCGTTCTGTCTTTATTACTAaaacttttcttcttcaaaatttccCGTAA
AAAGTTCTGGAATTTTGAGATTCTTATAAAGCAACAATTTCCATTTCAGA
TTCATGTTAGTTACAACTGAAATCCTAATGAATAATTCACTCCCAAATAA
GTTGAATtgggaaaaaagttttgaaataatttataaGGCTGTATATATAG
AATGGCACCAGGGGGTACTCTGTATAGAATTCATTCTTTTTCCTAAATCC
AAGGTTGTTTTAGCAAATAAAGACATTAGGTTTTTTTCACTAATGAGAAC
TTCTAGTCGAAATAACGACACAGGTCGcaacgaaaaataattttattttt
tcgacTGTTTGTAAACTTGGGTTGATAGTTTTGGCATATCGATTGTCCAA
AACTTTGCAAGATTAAAACTGATTGGATATTAATTGTTACTGGTTTGTAG
AATCATTGTCTGAAATACAACCAAGATGGCGAAAGCTTGAAACGATCTGA
TGATATATCATACTACTGGTATGAGGGGAAGTTAGAAGAAGATTTGGAGA
ATTTTCTTTCGCTTGATTTATTAAACATTTTAGTATACAGTGCTTTGAGt
gagttaatttttcataaaaatgacaCAATTACTGATAATTGATGACGAAA
TGCGTCGAATGAGGCATTCTCGACCGACTACTCCTATATCACCCAGTGTA
AGTTCTGGTTTTTAAATTTCCCTGGATTCACCCAAGTTTTAAATCGGTAG
CTCTTTATTTACCTTTATATCAATGATTCTTATTCAGGATTGTTTGCAAA
ATCATCTAATTATCAATTTACGGTTCCTGACTAATATTGTGACCATTTCT
TGGAAAATCCTTCTACCTCTTCTAATTTTAATGTTGATATGTGGATTTTG
TGGGTGTGCGTGGCTTCTTCCACATTAGCGAATTtatgtttctttgtttt
tctgcgACAGTTGCAGTAAGGCCctaatttgtctagatcctgattaATTC
TGGACGACGGTAAATAAGCACTTTCATCGTCCTCCATTTTGTGTGTTAGA
ACTACCGGTTATAACAAATGGCTTCAGTCACTCCGCCGTCCTAAAAAGTc
taaatacataaactcaccAATATTTAGCCAGGGACTGTAGTCATCTAATA
TGGACGGACATTTACGTAAGGTTAGGTTAATTTTGACTTTTGTGTGTGCT
AGCTTTGTTGGGAAATGATCTTTCCCTATGCACATCCCTATCTCATGTAA
TGGGCAAGAAGTTACTAAAGGCCCCCCAGGCGGTTTGTATGATAGGGATT
TTTTTCTAGCGTGAtcacgtgatttggaaattttttctttcgtgattgcg
tgatcagagaTCAAAACGTCATCgtgattttaaagatttttgaacTGTGt
tgcgtgattgggacttttttcaaagggatgcgtgatcatccaattttttt
tccttatttgcacgatcgtgattgaagacaaaaaattgcatgatcagagt
taccgctgggggAGTGGGGGAATATATCAGCATTTgttattataaacaaa
aaataagttttcCTATCCAATTAGCTTTTGCATggtgaaaaatattcatt
tcgACTATTCGACTTTTATTTCCAGTTTGACAAGCTGGAGAAGAACTGGT
TTCGAGCAGCATTGAGATGTGATCTTGAGCAATTGAAAAGATATTACGCC
AAAGATCATCTTTTACTTGATAAGAAAGACAATTTCACTGGGGTGagtat
ttcaaactttttacttcACAGTTTTCATATGCGGTTTTAGAGCATGTCGA
ACTTTTTAGATGAAGAGATttataattgtaatttcattgtcttttaacga
tgAGCGTTGCTCTTCTTCGCAtctttccgacgtacttgctttATTGTCTT
AAATACGCCAGTGGTCTTAGTTCTAAGTGTTGCAATCCATTCTAATCCAC
AAAgtacataacgttgtttcaacgctcATATATGACGTTTTATGTATTGA
CGCAGTGTTGAGACTTTGGGATAGTCCAACTGTTACAGCTTCCTAAACAC
AAATTCTGATCCAACGCTATTTATGGGGAAGGGCTAATTTAGAACTGTTT
TCAGAATTGAACTTTCAAAAACCTCTGCTTTAGTTTGTCATCAGCGAAAA
GGAAAATCTTCAACCTTCAACCGGCTTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00026284-exon-sc0000566-1491911889:181321..181435 | TCONS_00026284-exon-sc0000566-1491911889:181321..181435 | Clytia hemisphaerica | exon |
| TCONS_00026284-exon-sc0000566-1510915933:181321..181435 | TCONS_00026284-exon-sc0000566-1510915933:181321..181435 | Clytia hemisphaerica | exon |
| TCONS_00026284-exon-sc0000566-1575043694:181321..181435 | TCONS_00026284-exon-sc0000566-1575043694:181321..181435 | Clytia hemisphaerica | exon |
| TCONS_00026284-exon-sc0000566-1491911889:183846..183962 | TCONS_00026284-exon-sc0000566-1491911889:183846..183962 | Clytia hemisphaerica | exon |
| TCONS_00026284-exon-sc0000566-1510915933:183846..183962 | TCONS_00026284-exon-sc0000566-1510915933:183846..183962 | Clytia hemisphaerica | exon |
| TCONS_00026284-exon-sc0000566-1575043694:183846..183962 | TCONS_00026284-exon-sc0000566-1575043694:183846..183962 | Clytia hemisphaerica | exon |
| TCONS_00026284-exon-sc0000566-1491911889:184354..184398 | TCONS_00026284-exon-sc0000566-1491911889:184354..184398 | Clytia hemisphaerica | exon |
| TCONS_00026284-exon-sc0000566-1510915933:184354..184398 | TCONS_00026284-exon-sc0000566-1510915933:184354..184398 | Clytia hemisphaerica | exon |
| TCONS_00026284-exon-sc0000566-1575043694:184354..184398 | TCONS_00026284-exon-sc0000566-1575043694:184354..184398 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000566 | supercontig | sc0000566:181321..184398 + |
Blast
The following BLAST results are available for this feature:
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