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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00026259 ID=TCONS_00026259|Name=TCONS_00026259|organism=Clytia hemisphaerica|type=transcript|length=3385bpRun BLAST on NCBI protein sequence of TCONS_00026259-protein >TCONS_00026259-protein ID=TCONS_00026259-protein|Name=TCONS_00026259-protein|organism=Clytia hemisphaerica|type=polypeptide|length=321bp MRILHVDGFNEQEKKEKIEDIKRNIKEGILTVTGAMKTILPPATLEHPEERun BLAST on NCBI transcript from alignment at sc0000566:1..18985+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00026259 ID=TCONS_00026259|Name=TCONS_00026259|organism=Clytia hemisphaerica|type=transcript|length=18985bp|location=Sequence derived from alignment at sc0000566:1..18985+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000566:1..18985+ >TCONS_00026259 ID=TCONS_00026259|Name=TCONS_00026259|organism=Clytia hemisphaerica|type=CDS|length=11592bp|location=Sequence derived from alignment at sc0000566:1..18985+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00026259 vs. Swiss-Prot (Human)
Match: GNAL (Guanine nucleotide-binding protein G(olf) subunit alpha OS=Homo sapiens GN=GNAL PE=1 SV=1) HSP 1 Score: 506.908 bits (1304), Expect = 6.788e-169 Identity = 247/338 (73.08%), Postives = 293/338 (86.69%), Query Frame = 3
Query: 108 ILFKGAGESGKSTIVKQMRILHVDGFNXXXXXXXXXXXXXXXXXGILTVTGAMKTILPPATLEHPEEQWRIDWLHENAAPDEEFEYPQDFYDHVEILWKDKGVQGCFERSNEYQLIDCAQYFLDRTSEVRKKDYSPSNQDLLRCRVLTRGIIETRFQVDRVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVACSSYNLVLREDQTQNRLRESLELFTGIWNNRFLKTISVILFLNKQDLLRDKVLAQKSKLEDYFADFARYRTPEDAIKEAGEEDEVTRAKYFIRDEFLRISTATGEGKHYCYPHFTCAVDTENIRRVFNDCRDIIQRMHLRQYELL 1121
+L GAGESGKSTIVKQMRILHV+GFN +EKK+KI DI++N+K+ I+T+ AM TI+PP L +PE Q+R D++ ++ AP +FEY Q+F+DHV+ LW D+GV+ CFERSNEYQLIDCAQYFL+R V DY+P++QDLLRCRVLT GI ETRFQVD+VNFHMFDVGGQRDERRKWIQCFNDVTAII+V ACSSYN+V+RED NRLRESL+LF IWNNR+L+TIS+ILFLNKQD+L +KVLA KSK+EDYF ++A Y PEDA +AGE+ +VTRAK+FIRD FLRISTATG+GKHYCYPHFTCAVDTENIRRVFNDCRDIIQRMHL+QYELL
Sbjct: 45 LLLLGAGESGKSTIVKQMRILHVNGFNPEEKKQKILDIRKNVKDAIVTIVSAMSTIIPPVPLANPENQFRSDYI-KSIAPITDFEYSQEFFDHVKKLWDDEGVKACFERSNEYQLIDCAQYFLERIDSVSLVDYTPTDQDLLRCRVLTSGIFETRFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIYVAACSSYNMVIREDNNTNRLRESLDLFESIWNNRWLRTISIILFLNKQDMLAEKVLAGKSKIEDYFPEYANYTVPEDATPDAGEDPKVTRAKFFIRDLFLRISTATGDGKHYCYPHFTCAVDTENIRRVFNDCRDIIQRMHLKQYELL 381 The following BLAST results are available for this feature:
BLAST of TCONS_00026259 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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