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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00026243 ID=TCONS_00026243|Name=TCONS_00026243|organism=Clytia hemisphaerica|type=transcript|length=4271bpRun BLAST on NCBI protein sequence of TCONS_00026243-protein >TCONS_00026243-protein ID=TCONS_00026243-protein|Name=TCONS_00026243-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1141bp MNVAATRDFIIDNDRLLKINFNMPTHANPLDWYCTSPLPDVTITAKDAPTRun BLAST on NCBI transcript from alignment at sc0000565:5248..17908- Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00026243 ID=TCONS_00026243|Name=TCONS_00026243|organism=Clytia hemisphaerica|type=transcript|length=12661bp|location=Sequence derived from alignment at sc0000565:5248..17908- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000565:5248..17908- >TCONS_00026243 ID=TCONS_00026243|Name=TCONS_00026243|organism=Clytia hemisphaerica|type=CDS|length=54768bp|location=Sequence derived from alignment at sc0000565:5248..17908- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00026243 vs. Swiss-Prot (Human)
Match: VWDE (von Willebrand factor D and EGF domain-containing protein OS=Homo sapiens GN=VWDE PE=2 SV=4) HSP 1 Score: 164.851 bits (416), Expect = 1.055e-40 Identity = 150/530 (28.30%), Postives = 232/530 (43.77%), Query Frame = 3
Query: 36 TRYPVWLN----DTHPTSYNQATNVKACINVEGV------CCLQEIQIQAARCRDNVKNEDFFVYKLAQLTLACPVGYC---IGKEVRCPAGQTSTTGFTPCHDEF-----PKQRSLPKVTVDVHNSRIRFTCDFEIETIRANNRYNVTWYSTTGTAAPKILKVDPLENDQTKSYLRNENTLRT--------INERAFCLNQNIFCEVRSFFAGSED-KSDFKRSNVFYAGIKISPTNIVISEQGSAQDVTLTSTVPIVCNEGSPT---CGVNIR---INQNDKNAKIE---DRCSLRFERGEVTKK-------MNVAATRDFIIDNDRLLKINFNMPTHANPLDWYCTSPLPD-VTITAKDAPTKECKTTGDPYITTFDGKWFRHYKVGDYILVKSGARVFEVHTRVFEC---HVSVSCNCGVAAREGDDVMVVDMC--QTGKAPIVKFASTVEPQQGSRIERLPGGKKFILNFPSGARVTFEYKNANIFADIIVSLPPDDYQNTRGLCGTWNGNKNDDFTSASGHVVD 1478
T+ P+WL+ +T P S + + AC + + CCL +I + C + F VY L Q T C +GYC I P G T C + P P+V V++ SR+ C F++ + + +++ W L + + K L E T++ IN R L IFC FF + +S S F+AG K+ P ISE G + + STVPI+C+E S C ++++ I Q ++ + C + + + A DF D DR+ I P W + +PD + I KD PT C T DP+I TFDG+ + ++K G ++L KS +R FEVH R ++C H VSCNCG A+EG D++ DMC Q ++ F + + + +I G+K + F SGA + + + + + P DY+NT GLCGT++ N +DF +G +D
Sbjct: 87 TQAPIWLSLRDSETLP-SPGEIKQLTACATWQFLFSTTKDCCLFQIPVSVRNCGN------FSVY-LLQPTQGC-MGYCAEAISDARLHPCGSDETETGGDCVRQLAASLPPPPAGRPEVLVELIESRLFCRCSFDVPATKNSVGFHIAWSR--------------LSSQEVKEELTQETTVQAFSLLELDGINLR---LGDRIFCSASVFFLENPHVQSVAIESQEFFAGFKLQPELSTISEDGKEYYLRIESTVPIICSEFSELDQECKISLKLKTIGQGREHLGLNLALSSCHVDLLQTSSCANGTCSHTFVYYTAVTDFSRDGDRVSNIVVQ-PIVNEDFLW--NNYIPDSIQIKVKDVPTAYCYTFTDPHIITFDGRVYDNFKTGTFVLYKSMSRDFEVHVRQWDCRSLHYPVSCNCGFVAQEGGDIVTFDMCNGQLRESQPYLFIKSQDVTRNIKISESYLGRKVTIWFSSGAFIRADLGEWGM--SLTIRAPSVDYRNTLGLCGTFDENPENDFHDKNGMQID 585 HSP 2 Score: 120.168 bits (300), Expect = 5.161e-27 Identity = 111/445 (24.94%), Postives = 180/445 (40.45%), Query Frame = 3
Query: 1896 SGITQQQAEQSCNRALKESKSGKICLQVIPTLDITPFMQQCIDDTKVLDDSRTSIISAVAAMMXXXXXXTLRNVTLWTADDNGNLQPPQAVGDAL----CPSDCSGNGGCVNSTCVCNAGFLSVDCSIKEGDQPVLERVASDGLCDIRKQDCLRARVIGQNYVESDKLACGTKKLKVDGLILEGRSTSNMLSSKSDLLSFRDLSCEIPEQHLPLVDLDFSPVRPGRPVGGVSIQLSNDGETFSNESSNYIAYDSKCVECN--STTDCRWKVDSCRVNNYCIAVGEPNFEDWCQICR---GNNTFMERTDNVAPIFRPRSTQ-KAFHDHTLRFTVPVTDPEQKILKLNFVGRTPDNMEISSAGVITWTAAKENKTYNVRIRATDICGTFSEATYMFESVFCPCEKLNGAKC----------GAYPSVNCQCPKGCMGKNCTQAIKG 3170
SG+T+ C L S G++CL + + ++ C+ D + DD S A A++E E+ + + ++ G ++ D L CP+ CSGNG C+ C C+ F S DCS P + + + G CD++K +C+ RV G+ + E + C KL+ + + +++ + R + C++P + D + G+P G +++SNDG FSN I YD C C C K + C ++ C G+ N C ICR T+ +N P+ + + + F+ + DPE + + P+ +SSAG+ W T + +R D C +E E C+ LNG C G Y C C G G C I G
Sbjct: 799 SGLTEYSTLTLCQETLANSSIGRLCLAFLGK-RLDSVIEMCVKDVLLKDD--LSWAEAGVALLENECEKRIVEEGKYNTEEYGT-----SIEDILSVLKCPNLCSGNGQCMEWGCACSPSFSSYDCSDSYDKAPEITELGNAGFCDVQKYNCMMVRVFGKGFKELPSIKCEVTKLQYNS---SEWMPGEPIYTQTVFHNSRAVDCQLPTD---VQQFDTMDLVGGKPTGKWQLKVSNDGYKFSNPKITVI-YDGACQVCGLYKNDSCTIKENVCIIDGLCYVEGDKNPTSPCLICRPKISRFTWSFLENNQPPVIQALQDKLQTFYGENFEYQFVAFDPEGSDIHFT-LDSGPEGASVSSAGLFMWKTDLLT-TQQITVRLNDDCD--AETRVTIEVTVKSCDCLNGGSCVSDRNFSPGSGVY---LCVCLPGFHGSLCEVDISG 1221 The following BLAST results are available for this feature:
BLAST of TCONS_00026243 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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