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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00026227 ID=TCONS_00026227|Name=TCONS_00026227|organism=Clytia hemisphaerica|type=transcript|length=4901bpRun BLAST on NCBI protein sequence of TCONS_00026227-protein >TCONS_00026227-protein ID=TCONS_00026227-protein|Name=TCONS_00026227-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1514bp MAYFLLWMTLCSTILSFYSLTAQENPCSPEVHDVFDSSTIHQRSTGNIAPRun BLAST on NCBI transcript from alignment at sc0000565:67836..96915+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00026227 ID=TCONS_00026227|Name=TCONS_00026227|organism=Clytia hemisphaerica|type=transcript|length=29080bp|location=Sequence derived from alignment at sc0000565:67836..96915+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000565:67836..96915+ >TCONS_00026227 ID=TCONS_00026227|Name=TCONS_00026227|organism=Clytia hemisphaerica|type=CDS|length=104535bp|location=Sequence derived from alignment at sc0000565:67836..96915+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00026227 vs. Swiss-Prot (Human)
Match: VWDE (von Willebrand factor D and EGF domain-containing protein OS=Homo sapiens GN=VWDE PE=2 SV=4) HSP 1 Score: 170.629 bits (431), Expect = 2.092e-42 Identity = 190/691 (27.50%), Postives = 275/691 (39.80%), Query Frame = 3
Query: 54 AFVPFIMAYFLLWMTLCSTILSFYSLTAQENPCSPEVHDVFDSSTIHQR-STGNIAPRDSKSLICDISINHQVWHRF-ISPAGSEMPTTCPPSFACGTRYPVWLN----DTHPTSYNQATNVKACINVEGV------CCLEEIQIQAARCRDNVKNEDFFVYKLAQLTWACPVGYC---IGKEVRCPTGQTSATGFTPCHDEF-----PKQRSLPKVTVDVHNSRIRFTCDFEIETIRANNRYNVTWYSTTGTAAPKILKVDPLENNQTKSYLKNENTLRTAG-------NERAFCLNQNIFCEVRSFFAGSED-KSDLKRSNVFYAGIKVSPTNIIISEKGPTQNVTLTSTVPIVCN-------------------HGSTTCGVNIRIEKNETQAMTT------LCSLRFKPGDKTKTMNVAATKDFIDDNDRSLKIKFNIPRHANPLDWFCTSPIPE-ITVTAKDAPTRQCRSTGDPYINTFDGTWFPHYKVGDYVLVTSKARLFEVHARAFECQR---SVSCNCGVAAREGDDVMVVDMCQNT---KPPIVKFASTVLPQEGSIIERGPDGKTFILNFPSGARVTFVYRNPSSDIIVSLPPDDYQNTRGLCGTWNGNTNDDFTSASGHVVDLQGSSVWLSRNRERMDNFTESYRFKDFSRESLFYYQGAKVKSCTATRIPSYCSCKGD 1946
A V I FL W AQE CSP H S R + ++ + LICD S++ W+RF I +EMPT C CGT+ P+WL+ +T P S + + AC + + CCL +I + C + F VY L Q T C +GYC I P G C + P P+V V++ SR+ C F++ + + +++ W L + + K L E T++ N R L IFC FF + +S S F+AG K+ P ISE G + + STVPI+C+ G G+N+ + + T CS F + A DF D DR I + + D+ + IP+ I + KD PT C + DP+I TFDG + ++K G +VL S +R FEVH R ++C+ VSCNCG A+EG D++ DMC P + S + + I E G+ + F SGA + + + P DY+NT GLCGT++ N +DF +G +D +N F +R S S T+ PSYCSC D
Sbjct: 5 ACVLVIALMFLAWGE------------AQE--CSPGGHQFLRSPYRSVRFDSWHLQQSAVQDLICDHSLSPG-WYRFLILDRPAEMPTKCVEMNHCGTQAPIWLSLRDSETLP-SPGEIKQLTACATWQFLFSTTKDCCLFQIPVSVRNCGN------FSVY-LLQPTQGC-MGYCAEAISDARLHPCGSDETETGGDCVRQLAASLPPPPAGRPEVLVELIESRLFCRCSFDVPATKNSVGFHIAWSR--------------LSSQEVKEELTQETTVQAFSLLELDGINLR---LGDRIFCSASVFFLENPHVQSVAIESQEFFAGFKLQPELSTISEDGKEYYLRIESTVPIICSEFSELDQECKISLKLKTIGQGREHLGLNLALSSCHVDLLQTSSCANGTCSHTF--------VYYTAVTDFSRDGDRVSNI---VVQPIVNEDFLWNNYIPDSIQIKVKDVPTAYCYTFTDPHIITFDGRVYDNFKTGTFVLYKSMSRDFEVHVRQWDCRSLHYPVSCNCGFVAQEGGDIVTFDMCNGQLRESQPYLFIKSQDVTRNIKISESYL-GRKVTIWFSSGAFIRADLGEWGMSLTIRAPSVDYRNTLGLCGTFDENPENDFHDKNGMQID---------QNFNNYVAFINEWRILPGKSMS-----DTLPVSMTSPGKPSYCSCSLD 628 HSP 2 Score: 139.428 bits (350), Expect = 8.985e-33 Identity = 118/443 (26.64%), Postives = 191/443 (43.12%), Query Frame = 3
Query: 2211 SGITQQQAEQSCERALRDSTSGRACLRILPTLDITPFMQQCIEDTKVLDDSRTSIISAVAAMMXXXXXXTLRNVALWTADDDGNLQPPQAVGDAL----CPSDCSGNGRCVNSTCVCDAGFLSVDCSINEGDPPVLEKVASDGLCDIRKQDCLRARVIGRNYVESDKLACRTKKLKVESNLLIKESTTSSFVTSRSDMLTFRDLSCEIPGQHLPLVDLDFSSTQSGRPVGGVSIQLSNDGETFSNESSNYIAYDSKCVECN--SSTDCRWKVDSCRVNNYCLAVDEPHFMDWCQICR---GNNTFNERTDNSAPVFRPTLTQ-RAFPGQTLRFTVPVTDPEQKRLKFNLVGTTPDNMEISSAGVITWTAARENKTYNVRIRATDICGNFSEATYMFESVSCPCERLNGAKCGAYPNVT-------CQCPKGCIGENCTQDIQG 3488
SG+T+ C+ L +S+ GR CL L + ++ C++D + DD S A A++E E+ + + ++ G ++ D L CP+ CSGNG+C+ C C F S DCS + P + ++ + G CD++K +C+ RV G+ + E + C KL+ S+ E + +++ R + C++P + D G+P G +++SNDG FSN I YD C C + C K + C ++ C + + C ICR T++ +N PV + + + F G+ + DPE + F L + P+ +SSAG+ W T + +R D C + T SC C LNG C + N + C C G G C DI G
Sbjct: 799 SGLTEYSTLTLCQETLANSSIGRLCLAFLGK-RLDSVIEMCVKDVLLKDD--LSWAEAGVALLENECEKRIVEEGKYNTEEYGT-----SIEDILSVLKCPNLCSGNGQCMEWGCACSPSFSSYDCSDSYDKAPEITELGNAGFCDVQKYNCMMVRVFGKGFKELPSIKCEVTKLQYNSS----EWMPGEPIYTQTVFHNSRAVDCQLPTD---VQQFDTMDLVGGKPTGKWQLKVSNDGYKFSNPKITVI-YDGACQVCGLYKNDSCTIKENVCIIDGLCYVEGDKNPTSPCLICRPKISRFTWSFLENNQPPVIQALQDKLQTFYGENFEYQFVAFDPEGSDIHFTL-DSGPEGASVSSAGLFMWKTDLLT-TQQITVRLNDDCDAETRVTIEVTVKSCDC--LNGGSCVSDRNFSPGSGVYLCVCLPGFHGSLCEVDISG 1221 The following BLAST results are available for this feature:
BLAST of TCONS_00026227 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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