TCONS_00026216 (transcript) - C. hemisphaerica

Overview
NameTCONS_00026216
Unique NameTCONS_00026216
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1132

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00026216 ID=TCONS_00026216|Name=TCONS_00026216|organism=Clytia hemisphaerica|type=transcript|length=1132bp
GTACATTTGTATTAATATCTTTTTCACTTTATCAGTAGAATCTTCTATAA
Ggaataataaatcaaaaattaaacaaaagcgtaaaattataaacaaactt
TCATATTTACagctatttaaaaatatttacaaNCACTTTATCGGTAGAAT
CTTCTATAAGgaataataaatcaaaaattaaacaaaagcgtaaaattata
aacaaacttTCATATTTACagctatttaaaaatatttacaattatttctt
attttgaaaataaatatggtcCATGGACATTAACTCAATTGGCATCTTCA
CTATTTCATTAAACCGCAAGTCCAATTTGCTCTTTTGTAAACATAGATCA
GCCATTTCATCAGGTATAAtggttattttattttcaggaaGTAATAAAGT
TGACAAATGATCCATTTTATGTAAACAATTGGGTACATGTCTCAATTGAT
TTCTGCTCAAATCTAGTGATTGTAGGTTAACCAAACATATAAAACCGTCA
GGTAAATTTTCCAAGTTATTATCTTTTAGTCTCAACCATTTCAAAtttat
taacaattttatgttATCTGGTATTTCATTTATATGATTTTGACTGAAGC
TTAATAACTCCAGATTTAATAACTCACATATTTCCATTGGGAAGTAGGTC
ATTGTGACTTCATCCATAAATAATTTAGTCAGGGATAACAATAAAGTGAA
ATCATTGCCAAGGTATGAGATTGGATTCCTAGATAATGATAAGACCTTCA
ACTTTTTCAAGCTCCCAAATTCCGTTGGTAGCATTGTTAATTGATTATTC
TCCAGGTTCAATTCTTCGAGTTCAGAAAATCGACATAACTCTGTGGGAGG
CATTCTCAAATTACACTGACATAATAGAAGTATTTTCAAGTTTCTTAGCT
TTTCAATAGAGGGAGGTAAGACAATGATATCTTTGTAACTCCAATTAAAA
GTTGAAGCATTCATTTTATGACAAGATTCTATTTCTTTTTCCATATCACT
CATGataaatatttacattttatttatgAATACCTTAGTAAGAGATAGAG
ACATATCATTTAACATGTACATTTATAACATAAATATCTACTTCAGTCAT
TTATTTgcaaaattataaagaaaaacctCATG
Run BLAST on NCBI

protein sequence of TCONS_00026216-protein

>TCONS_00026216-protein ID=TCONS_00026216-protein|Name=TCONS_00026216-protein|organism=Clytia hemisphaerica|type=polypeptide|length=253bp
MSDMEKEIESCHKMNASTFNWSYKDIIVLPPSIEKLRNLKILLLCQCNLR
MPPTELCRFSELEELNLENNQLTMLPTEFGSLKKLKVLSLSRNPISYLGN
DFTLLLSLTKLFMDEVTMTYFPMEICELLNLELLSFSQNHINEIPDNIKL
LINLKWLRLKDNNLENLPDGFICLVNLQSLDLSRNQLRHVPNCLHKMDHL
STLLLPENKITIIPDEMADLCLQKSKLDLRFNEIVKMPIELMSMDHIYFQ
NKK
Run BLAST on NCBI

transcript from alignment at sc0000564:102028..103159

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00026216 ID=TCONS_00026216|Name=TCONS_00026216|organism=Clytia hemisphaerica|type=transcript|length=1132bp|location=Sequence derived from alignment at sc0000564:102028..103159 (Clytia hemisphaerica)
CATGaggtttttctttataattttgcAAATAAATGACTGAAGTAGATATT
TATGTTATAAATGTACATGTTAAATGATATGTCTCTATCTCTTACTAAGG
TATTcataaataaaatgtaaatatttatCATGAGTGATATGGAAAAAGAA
ATAGAATCTTGTCATAAAATGAATGCTTCAACTTTTAATTGGAGTTACAA
AGATATCATTGTCTTACCTCCCTCTATTGAAAAGCTAAGAAACTTGAAAA
TACTTCTATTATGTCAGTGTAATTTGAGAATGCCTCCCACAGAGTTATGT
CGATTTTCTGAACTCGAAGAATTGAACCTGGAGAATAATCAATTAACAAT
GCTACCAACGGAATTTGGGAGCTTGAAAAAGTTGAAGGTCTTATCATTAT
CTAGGAATCCAATCTCATACCTTGGCAATGATTTCACTTTATTGTTATCC
CTGACTAAATTATTTATGGATGAAGTCACAATGACCTACTTCCCAATGGA
AATATGTGAGTTATTAAATCTGGAGTTATTAAGCTTCAGTCAAAATCATA
TAAATGAAATACCAGATaacataaaattgttaataaaTTTGAAATGGTTG
AGACTAAAAGATAATAACTTGGAAAATTTACCTGACGGTTTTATATGTTT
GGTTAACCTACAATCACTAGATTTGAGCAGAAATCAATTGAGACATGTAC
CCAATTGTTTACATAAAATGGATCATTTGTCAACTTTATTACttcctgaa
aataaaataaccaTTATACCTGATGAAATGGCTGATCTATGTTTACAAAA
GAGCAAATTGGACTTGCGGTTTAATGAAATAGTGAAGATGCCAATTGAGT
TAATGTCCATGgaccatatttattttcaaaataagaaataattgtaaata
tttttaaatagctGTAAATATGAaagtttgtttataattttacgcttttg
tttaatttttgatttattattcCTTATAGAAGATTCTACCGATAAAGTGN
ttgtaaatatttttaaatagctGTAAATATGAaagtttgtttataatttt
acgcttttgtttaatttttgatttattattcCTTATAGAAGATTCTACTG
ATAAAGTGAAAAAGATATTAATACAAATGTAC

Coding sequence (CDS) from alignment at sc0000564:102028..103159

>TCONS_00026216 ID=TCONS_00026216|Name=TCONS_00026216|organism=Clytia hemisphaerica|type=CDS|length=762bp|location=Sequence derived from alignment at sc0000564:102028..103159 (Clytia hemisphaerica)
ATGAGTGATATGGAAAAAGAAATAGAATCTTGTCATAAAATGAATGCTTC
AACTTTTAATTGGAGTTACAAAGATATCATTGTCTTACCTCCCTCTATTG
AAAAGCTAAGAAACTTGAAAATACTTCTATTATGTCAGTGTAATTTGAGA
ATGCCTCCCACAGAGTTATGTCGATTTTCTGAACTCGAAGAATTGAACCT
GGAGAATAATCAATTAACAATGCTACCAACGGAATTTGGGAGCTTGAAAA
AGTTGAAGGTCTTATCATTATCTAGGAATCCAATCTCATACCTTGGCAAT
GATTTCACTTTATTGTTATCCCTGACTAAATTATTTATGGATGAAGTCAC
AATGACCTACTTCCCAATGGAAATATGTGAGTTATTAAATCTGGAGTTAT
TAAGCTTCAGTCAAAATCATATAAATGAAATACCAGATaacataaaattg
ttaataaaTTTGAAATGGTTGAGACTAAAAGATAATAACTTGGAAAATTT
ACCTGACGGTTTTATATGTTTGGTTAACCTACAATCACTAGATTTGAGCA
GAAATCAATTGAGACATGTACCCAATTGTTTACATAAAATGGATCATTTG
TCAACTTTATTACttcctgaaaataaaataaccaTTATACCTGATGAAAT
GGCTGATCTATGTTTACAAAAGAGCAAATTGGACTTGCGGTTTAATGAAA
TAGTGAAGATGCCAATTGAGTTAATGTCCATGgaccatatttattttcaa
aataagaaataa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_014743XLOC_014743Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00026216-proteinTCONS_00026216-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00026216-exon-sc0000564-1491911889:102028..103159TCONS_00026216-exon-sc0000564-1491911889:102028..103159Clytia hemisphaericaexon
TCONS_00026216-exon-sc0000564-1510915933:102028..103159TCONS_00026216-exon-sc0000564-1510915933:102028..103159Clytia hemisphaericaexon
TCONS_00026216-exon-sc0000564-1575043694:102028..103159TCONS_00026216-exon-sc0000564-1575043694:102028..103159Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000564supercontigsc0000564:102028..103159 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
9.80154	7.87133	3.3511	1.91602	1.96973	1.1469	2.17436	3.74738	1.19845	1.08326	1.51875	0.793572	0.843596	1.38049	0.589303	0.796371	1.24076	1.18301	0.326879	0.342055	1.74668	2.39277	19.7	17.9102	2.26977	4.89855	1.05411	1.51871	7.80725	8.82368
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR003591Leu-rich_rpt_typical-subtyp
IPR001611Leu-rich_rpt
IPR032675L_dom-like
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
Blast
[Close]
BLAST of TCONS_00026216 vs. Swiss-Prot (Human)
Match: SCRIB (Protein scribble homolog OS=Homo sapiens GN=SCRIB PE=1 SV=4)

HSP 1 Score: 84.7297 bits (208), Expect = 1.267e-17
Identity = 63/188 (33.51%), Postives = 99/188 (52.66%), Query Frame = -1 
Query:  356 LPPSIEKLRNLKILLLCQCNLRMPPTELCRFSXXXXXXXXXNQLTMLPTEFGXXXXXXXXXXSRNPISYLGNDFTLLLSLTKLFMDEVTMTYFPMEICELLNLELLSFSQNHINEIPDNIKLLINLKWLRLKDNNLENLPDGFICLVNLQSLDLSRNQLRHVPNCLHKMDHLSTLLLPENKITIIPDE 919
            LP    +L NL+ L L    ++  P E+  F +L EL++  N +  +P      K L++   S NP+S L + FT L SL  L +++V++   P ++  L NL  L   +N +  +P ++  L+ L+ L L  N+LE LPD    L NL+ L L RNQL  +P  L  +  L  L + EN++  +P E
Sbjct:   51 LPKPFFRLLNLRKLGLSDNEIQRLPPEVANFMQLVELDVSRNDIPEIPESIKFCKALEIADFSGNPLSRLPDGFTQLRSLAHLALNDVSLQALPGDVGNLANLVTLELRENLLKSLPASLSFLVKLEQLDLGGNDLEVLPDTLGALPNLRELWLDRNQLSALPPELGNLRRLVCLDVSENRLEELPAE 238
The following BLAST results are available for this feature:
BLAST of TCONS_00026216 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SCRIB1.267e-1733.51Protein scribble homolog OS=Homo sapiens GN=SCRIB ... [more]
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