|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00026188 ID=TCONS_00026188|Name=TCONS_00026188|organism=Clytia hemisphaerica|type=transcript|length=5033bpRun BLAST on NCBI transcript from alignment at sc0000564:103802..157644+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00026188 ID=TCONS_00026188|Name=TCONS_00026188|organism=Clytia hemisphaerica|type=transcript|length=53843bp|location=Sequence derived from alignment at sc0000564:103802..157644+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
No biomaterial libraries express this feature.
Blast
BLAST of TCONS_00026188 vs. Swiss-Prot (Human)
Match: ATR (Serine/threonine-protein kinase ATR OS=Homo sapiens GN=ATR PE=1 SV=3) HSP 1 Score: 603.979 bits (1556), Expect = 1.814e-180 Identity = 383/1291 (29.67%), Postives = 689/1291 (53.37%), Query Frame = 3
Query: 1410 LDTAAAEEILQSCLELASIPWISTIDPPWFDLKIVTFTQDELYQMYQLVQSDTVSIQQCCLDLL------LVLSINAQCHTWI---SH-IIRNTMANSNSPPTIHQQLLKMLPEFVLTLKENGLHVVEDDLLMFVRSASPSLVERVGEVISKVICVL-------SKNSKIGLRNGRAVITCTSCEKGDKE---SGQLDSPDVFRVLKPFFLMVKQSLNKKYKLYLTQALSRLVRHVDSMDE---IRSLWQPVLDLLLDPDYETRYCLSESLKDLVK------GGGETLYRQAMDQISGAFVKASAANDSSVMETLILSMGNVGIMASNQFTSIVVISLFNCFVTQDKFLASLAADQIQSIARAKKMSYHSLFMASKSQLCNMTVKKV-----------------LKSLEEGKDYQTVTDEFVSIAKLFEFPDVKAYLTETATEMLPKIVENVSTHSSIILRLFAKYSSQNRREMLFNNFKYIFSYLLRTISDEKHLEKCLGYLQEEAQVELQTMLVSEYQNVLNQLILYMSVNRDQVYHGFKILVG---SDDSYEGPKDFQNDEHVAMFLQPKLLGVLAFFNFVLINSPLN--EKKTALKSIICLLNVLGKKYLTPVRLKVMAILKLSLKHMKDFSEICCEAWLTFTHNVEKEYLGVLISQIIPTVLPLLQYCEEPVLEIINFLIVRNRVNFRDHFKEVYFLPEHPSLRKAKQLIEEQRCRITSLKEFKLELQSAIKSMKSENEDVQKFALQRICDLLETNTTYLQETLIQNENIDVSIKELLQALMQVPKERGEQIYALVGKCFGLIGAVDVGNMDNLFDTSS----DLSNPTSVYDDAKFPVEILNELCRSFVS-ASSTRAQDCAAFAMQETMQFYKCSS-ERNQPGYTLWSQFSDSMKEILAPHLRSKYRST-SNYNWSKLQLPIYGSPKGSSYKDWTSNYTSYLIHHIKNERFSKLMKPFLSGLKYDLRLSLFLMPHVIHHTLMSGNIA---LVNTEFKCILEQMNDATTAKKDIT----HLCLQTLFSVLDFLSSWYKNTEDTNEAEIIT-GRAN------------------IKTFLDNIPRNKMAIASLNCKSLARSLLYYEEYMNTNSEHIDNHLEFLQKIYYALDEPDGISGIAATRNRTPTLNEKIFQHRSAGNLRGAVACYERAIFIDPEEVQHHKGLLNCLVSLGQLNNASMNVAGIIESRPDWSDDLQTYQAEVSWRLGQWDKLKKTVQPLNTELKQDWSISLGKLLCSFKSKETDKFTDLLSSVRCEQTRVLLNANF 5030
++++ + IL+ + S+PWI + LK+ TF + L ++ S + Q C+ LL + L + W SH +IR + + F+L ++N + V L+ V+ S + + ++ +++C L S ++ +G + C + + + S QL + V KPF ++K+ + KL L L +H+D ++ ++++ +L+L+ DPD + R S ++K +++ G + L+ M + A+ A + ++ + +TLIL+ G++G A ++ L +C +++ ++ A +I+++ AK + S F K +C V+ + ++ + + + IA +F+FPD+ +LT T +LP + S +S ++R K + NRRE+L NNFKYIFS+L+ + S ++ LE+ L YL+ E ++EL ++L ++Q + N+L+L + + QV++G IL SDD Y+GP+D + E +A +LQPKLLG+LAFFN L++S + +KK AL S++ L+ ++G K+++ VR+K+M L+ L+ DF E+CC AW F ++ LG L+S +I +LPL+ + I ++LI+ NR +D E+YFLP+HP L+K K +++E R + + + LQ ++K+++ EN DV+ AL + + L N L + +E ++ I +L+ L++ ++ Q L G+C G +GA+D G +D F T+ D + T V +D+ F +L EL R++++ A ++RAQD AA+A+QE + Y C E N PG+ LW +F + ++EIL PHL ++Y+S+ + +WS ++ PIY S GS++ +W++++ YLI ++++ SK+ +K+D +++++L+PH++ + L+ N V E +L+ + T +DI L QT+FS+LD L+ W ++ +AE ++N + FLD IP++ +A+AS K+ R+++++E ++ ++I HL FLQK+Y A+ EPDG++G++A R P+L E+I +H S G LR A ACY+RAI ++P+++ H+ G++ ++ LGQL+ V G+ +R +W+D+L TY+ E +W+L QWD ++ + WS+ LG+LL S K ++ F D L VR EQ L A+F
Sbjct: 578 VNSSFEDHILEDLCGMLSLPWIYSHSDDGC-LKLTTFAANLLTLSCRISDSYSPQAQSRCVFLLTLFPRRIFLEWRTAVYNWALQSSHEVIRASCVSGF---------------FILLQQQNSCNRVPKILIDKVKDDSDIVKKEFASILGQLVCTLHGMFYLTSSLTEPFSEHGHVDLFCRNLKATSQHECSSSQLKA----SVCKPFLFLLKKKIPSPVKLAFIDNLHHLCKHLDFREDETDVKAVLGTLLNLMEDPDKDVRVAFSGNIKHILESLDSEDGFIKELFVLRMKE---AYTHAQISRNNELKDTLILTTGDIGRAAKGDLVPFALLHLLHCLLSKSASVSGAAYTEIRALVAAKSVKLQSFFSQYKKPICQFLVESLHSSQMTALPNTPCQNADVRKQDVAHQREMALNTLSEIANVFDFPDLNRFLTRTLQVLLPDLAAKASPAASALIRTLGKQLNVNRREILINNFKYIFSHLVCSCSKDE-LERALHYLKNETEIELGSLLRQDFQGLHNELLLRIGEHYQQVFNGLSILASFASSDDPYQGPRDIISPELMADYLQPKLLGILAFFNMQLLSSSVGIEDKKMALNSLMSLMKLMGPKHVSSVRVKMMTTLRTGLRFKDDFPELCCRAWDCFVRCLDHACLGSLLSHVIVALLPLIHIQPKETAAIFHYLIIENRDAVQDFLHEIYFLPDHPELKKIKAVLQEYRKETSESTDLQTTLQLSMKAIQHENVDVRIHALTSLKETLYKNQEKLIKYATDSETVEPIISQLVTVLLKGCQDANSQARLLCGECLGELGAIDPGRLD--FSTTETQGKDFTFVTGV-EDSSFAYGLLMELTRAYLAYADNSRAQDSAAYAIQELLSIYDCREMETNGPGHQLWRRFPEHVREILEPHLNTRYKSSQKSTDWSGVKKPIYLSKLGSNFAEWSASWAGYLITKVRHDLASKIFTCCSIMMKHDFKVTIYLLPHILVYVLLGCNQEDQQEVYAEIMAVLKHDDQHTINTQDIASDLCQLSTQTVFSMLDHLTQWARHKFQALKAEKCPHSKSNRNKVDSMVSTVDYEDYQSVTRFLDLIPQDTLAVASFRSKAYTRAVMHFESFITEKKQNIQEHLGFLQKLYAAMHEPDGVAGVSAIRKAEPSLKEQILEHESLGLLRDATACYDRAIQLEPDQIIHYHGVVKSMLGLGQLSTVITQVNGVHANRSEWTDELNTYRVEAAWKLSQWDLVENYLAADGK--STTWSVRLGQLLLSAKKRDITAFYDSLKLVRAEQIVPLSAASF 1839 The following BLAST results are available for this feature:
BLAST of TCONS_00026188 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2026, MARIMBA.