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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00026180 ID=TCONS_00026180|Name=TCONS_00026180|organism=Clytia hemisphaerica|type=transcript|length=7409bpRun BLAST on NCBI transcript from alignment at sc0000564:103589..133927+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00026180 ID=TCONS_00026180|Name=TCONS_00026180|organism=Clytia hemisphaerica|type=transcript|length=30339bp|location=Sequence derived from alignment at sc0000564:103589..133927+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00026180 vs. Swiss-Prot (Human)
Match: ATR (Serine/threonine-protein kinase ATR OS=Homo sapiens GN=ATR PE=1 SV=3) HSP 1 Score: 1284.24 bits (3322), Expect = 0.000e+0 Identity = 736/2077 (35.44%), Postives = 1185/2077 (57.05%), Query Frame = 1
Query: 1483 LDTAAAEEILQSCLELASIPWISTIDPPWFDLKIVTFTQDELYQMYQLVQSDTVSIQQCCLDLL------LVLSINAQCHTWI---SH-IIRNTMANSNSPPTIHQQLLKMLPEFVLTLKENGLHVVEDDLLMFVRSASPSLVERVGEVISKVICVL-------SKNSKIGLRNGRAVITCTSCEKGDKE---SGQLDSPDVFRVLKPFFLMVKQSLNKKYKLYLTQALSRLVRHVDSMDE---IRSLWQPVLDLLLDPDYETRYCLSESLKDLVK------GGGETLYRQAMDQISGAFVKASAANDSSVMETLILSMGNVGIMASNQFTSIVVISLFNCFVTQDKFLASLAADQIQSIARAKKMSYHSLFMASKSQLCNMTVKKV-----------------LKSLEEGKDYQTVTDEFVSIAKLFEFPDVKAYLTETATEMLPKIVENVSTHSSIILRLFAKYSSQNRREMLFNNFKYIFSYLLRTISDEKHLEKCLGYLQEEAQVELQTMLVSEYQNVLNQLILYMSVNRDQVYHGFKILVG---SDDSYEGPKDFQNDEHVAMFLQPKLLGVLAFFNFVLINSPLN--EKKTALKSIICLLNVLGKKYLTPVRLKVMAILKLSLKHMKDFSEICCEAWLTFTHNVEKEYLGVLISQIIPTVLPLLQYCEEPVLEIINFLIVRNRVNFRDHFKEVYFLPEHPSLRKAKQLIEEQRCRITSLKEFKLELQSAIKSMKSENEDVQKFALQRICDLLETNTTYLQETLIQNENIDVSIKELLQALMQVPKERGEQIYALVGKCFGLIGAVDVGNMDNLFDTSS----DLSNPTSVYDDAKFPVEILNELCRSFVS-ASSTRAQDCAAFAMQETMQFYKCSS-ERNQPGYTLWSQFSDSMKEILAPHLRSKYRSTS-NYNWSKLQLPIYGSPKGSSYKDWTSNYTSYLIHHIKNERFSKLMKPFLSGLKYDLRLSLFLMPHVIHHTLMSGNIA---LVNTEFKCILEQMNDATTAKKDIT----HLCLQTLFSVLDFLSSWYKNTEDTNEAEIIT-GRAN------------------IKTFLDNIPRNKMAIASLNCKSLARSLLYYEEYMNTNSEHIDNHLEFLQKIYYALDEPDGISGIAATRNRTPTLNEKIFQHRSAGNLRGAVACYERAIFIDPEEVQHHKGLLNCLVSLGQLNNASMNVAGIIESRPDWSDDLQTYQAEVSWRLGQWDKLKKTVQPLNTELKQDWSISLGKLLCSFKSKETDKFTDLLSSVRCEQTRVLLNANFGSGGYTQAYQSMLRLHMLRDMEQCSTILFNKDHITSTHNEATTRLLKEFDTRLNITEASYKTRESVLYLHQVFLQLLPDSVRENQFQALSDNVWLKIAKTARKDGLMQTAYSALLNIQNEEKEEIIVERANWYSCQKKVHEAF--------LC-AKGETEFTAKNL--SAKRILQKATLMEETESSEPGTILAVYKELPEKHPTWEKGHFFLAQYYEKLMSKVEDGSKEKYNIKQSHDFLKHIIKSYGFALQYGNKYIYQSMPRLLTHWLDFGQVAHLNITGESSSAKQSEVNYFKDWLKKVNDNIHQLVQILPPYKFLTALSQLVSRICHPSKQVWELLKAILCKIFKSYHQQAIWYTVAVYKSTVPMRSSRCKEVFQDVISSNSNLKSFIQQSLELTEMLLTISNQKCSGSK--LSMRKDFPTLVRMLKNPNLSPIMVPLQRTL-----TVKVSNKAESKFDPFPDALPYISGVDDMVDVLSSLQKPKKIKVRASDGLLYPLMCKPKDDLRKDCRLMEFNSLVNKFLLQDSECRRRQLHIRTYAVIPLNEECGLLEWVPNTKGLRIILQDIYREKGISYRVHDLKQIYDHMTREPQKARKCEIFVKRVLPKYPPIFHEWFLSTFFSPTKWYMARLAYCRTSAVISMVGYILGLGDRHGENILFDATCGDCVHVDFNCLFNKGEKFDCPERVPFRMTHNMVKAMGALGYEGVFRKSCEHTMKVMRREKESLLSVLNTFLYDPLVEWKKDSR---RAAMSAPSEKSSTEAMGILRNIDKRLRGITK 7398
++++ + IL+ + S+PWI + LK+ TF + L ++ S + Q C+ LL + L + W SH +IR + + F+L ++N + V L+ V+ S + + ++ +++C L S ++ +G + C + + + S QL + V KPF ++K+ + KL L L +H+D ++ ++++ +L+L+ DPD + R S ++K +++ G + L+ M + A+ A + ++ + +TLIL+ G++G A ++ L +C +++ ++ A +I+++ AK + S F K +C V+ + ++ + + + IA +F+FPD+ +LT T +LP + S +S ++R K + NRRE+L NNFKYIFS+L+ + S ++ LE+ L YL+ E ++EL ++L ++Q + N+L+L + + QV++G IL SDD Y+GP+D + E +A +LQPKLLG+LAFFN L++S + +KK AL S++ L+ ++G K+++ VR+K+M L+ L+ DF E+CC AW F ++ LG L+S +I +LPL+ + I ++LI+ NR +D E+YFLP+HP L+K K +++E R + + + LQ ++K+++ EN DV+ AL + + L N L + +E ++ I +L+ L++ ++ Q L G+C G +GA+D G +D F T+ D + T V +D+ F +L EL R++++ A ++RAQD AA+A+QE + Y C E N PG+ LW +F + ++EIL PHL ++Y+S+ + +WS ++ PIY S GS++ +W++++ YLI ++++ SK+ +K+D +++++L+PH++ + L+ N V E +L+ + T +DI L QT+FS+LD L+ W ++ +AE ++N + FLD IP++ +A+AS K+ R+++++E ++ ++I HL FLQK+Y A+ EPDG++G++A R P+L E+I +H S G LR A ACY+RAI ++P+++ H+ G++ ++ LGQL+ V G+ +R +W+D+L TY+ E +W+L QWD ++ + WS+ LG+LL S K ++ F D L VR EQ L A+F G Y + Y+ ++RLHML ++E LF S+ ++ + RL +T+ SY+ +E +L L + L + + + WL+ A+ ARK G QTAY+ALLN E+ VERA W + VH+A LC + ET KN+ + +L MEET + E I+ YK++ P WE GHF+LA+YY+KLM V D EK D +++I+ +G +LQYGN++IYQSMPR+LT WLD+G A+ E A +S+ ++ L K+N I + L PY+FLTA SQL+SRICH +V+ +L I+ K+F +Y QQA+W AV KS+ PMR +RCKE+ I +L+ F+ + LT+ LL + N+ GS LSM F L ++++ S I++PLQ + ++ ++ + +PFP YI+G DDMV++L+SLQKPKKI ++ SDG Y +MCKPKDDLRKDCRLMEFNSL+NK L +D+E RRR+LHIRTYAVIPLN+ECG++EWV NT GLR IL +Y+EKG+ +L+Q + + + K ++F + +LP++PPIFHEWFL TF PT WY +R AYCR++AV+SMVGYILGLGDRHGENILFD+ G+CVHVDFNCLFNKGE F+ PE VPFR+THNMV MG +G EG+FR++CE TM++MR ++E L+SVL TFL+DPLVEW K + +A ++ E + +A + +I++RL+G+ K
Sbjct: 578 VNSSFEDHILEDLCGMLSLPWIYSHSDDGC-LKLTTFAANLLTLSCRISDSYSPQAQSRCVFLLTLFPRRIFLEWRTAVYNWALQSSHEVIRASCVSGF---------------FILLQQQNSCNRVPKILIDKVKDDSDIVKKEFASILGQLVCTLHGMFYLTSSLTEPFSEHGHVDLFCRNLKATSQHECSSSQLKA----SVCKPFLFLLKKKIPSPVKLAFIDNLHHLCKHLDFREDETDVKAVLGTLLNLMEDPDKDVRVAFSGNIKHILESLDSEDGFIKELFVLRMKE---AYTHAQISRNNELKDTLILTTGDIGRAAKGDLVPFALLHLLHCLLSKSASVSGAAYTEIRALVAAKSVKLQSFFSQYKKPICQFLVESLHSSQMTALPNTPCQNADVRKQDVAHQREMALNTLSEIANVFDFPDLNRFLTRTLQVLLPDLAAKASPAASALIRTLGKQLNVNRREILINNFKYIFSHLVCSCSKDE-LERALHYLKNETEIELGSLLRQDFQGLHNELLLRIGEHYQQVFNGLSILASFASSDDPYQGPRDIISPELMADYLQPKLLGILAFFNMQLLSSSVGIEDKKMALNSLMSLMKLMGPKHVSSVRVKMMTTLRTGLRFKDDFPELCCRAWDCFVRCLDHACLGSLLSHVIVALLPLIHIQPKETAAIFHYLIIENRDAVQDFLHEIYFLPDHPELKKIKAVLQEYRKETSESTDLQTTLQLSMKAIQHENVDVRIHALTSLKETLYKNQEKLIKYATDSETVEPIISQLVTVLLKGCQDANSQARLLCGECLGELGAIDPGRLD--FSTTETQGKDFTFVTGV-EDSSFAYGLLMELTRAYLAYADNSRAQDSAAYAIQELLSIYDCREMETNGPGHQLWRRFPEHVREILEPHLNTRYKSSQKSTDWSGVKKPIYLSKLGSNFAEWSASWAGYLITKVRHDLASKIFTCCSIMMKHDFKVTIYLLPHILVYVLLGCNQEDQQEVYAEIMAVLKHDDQHTINTQDIASDLCQLSTQTVFSMLDHLTQWARHKFQALKAEKCPHSKSNRNKVDSMVSTVDYEDYQSVTRFLDLIPQDTLAVASFRSKAYTRAVMHFESFITEKKQNIQEHLGFLQKLYAAMHEPDGVAGVSAIRKAEPSLKEQILEHESLGLLRDATACYDRAIQLEPDQIIHYHGVVKSMLGLGQLSTVITQVNGVHANRSEWTDELNTYRVEAAWKLSQWDLVENYLAADGK--STTWSVRLGQLLLSAKKRDITAFYDSLKLVRAEQIVPLSAASFERGSYQRGYEYIVRLHMLCELEHSIKPLFQHSPGDSSQEDSLN-----WVARLEMTQNSYRAKEPILALRRALLS----LNKRPDYNEMVGECWLQSARVARKAGHHQTAYNALLNAGESRLAELYVERAKWLWSKGDVHQALIVLQKGVELCFPENETPPEGKNMLIHGRAMLLVGRFMEETANFESNAIMKKYKDVTACLPEWEDGHFYLAKYYDKLMPMVTDNKMEKQG-----DLIRYIVLHFGRSLQYGNQFIYQSMPRMLTLWLDYGTKAY-----EWEKAGRSDRVQMRNDLGKINKVITEHTNYLAPYQFLTAFSQLISRICHSHDEVFVVLMEIIAKVFLAYPQQAMWMMTAVSKSSYPMRVNRCKEILNKAIHMKKSLEKFVGDATRLTDKLLELCNKPVDGSSSTLSMSTHFKMLKKLVEEATFSEILIPLQSVMIPTLPSILGTHANHASHEPFPGHWAYIAGFDDMVEILASLQKPKKISLKGSDGKFYIMMCKPKDDLRKDCRLMEFNSLINKCLRKDAESRRRELHIRTYAVIPLNDECGIIEWVNNTAGLRPILTKLYKEKGVYMTGKELRQCM--LPKSAALSEKLKVFREFLLPRHPPIFHEWFLRTFPDPTSWYSSRSAYCRSTAVMSMVGYILGLGDRHGENILFDSLTGECVHVDFNCLFNKGETFEVPEIVPFRLTHNMVNGMGPMGTEGLFRRACEVTMRLMRDQREPLMSVLKTFLHDPLVEWSKPVKGHSKAPLNETGEVVNEKAKTHVLDIEQRLQGVIK 2604 The following BLAST results are available for this feature:
BLAST of TCONS_00026180 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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