TCONS_00026167 (transcript) - C. hemisphaerica

Overview
NameTCONS_00026167
Unique NameTCONS_00026167
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length534

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00026167 ID=TCONS_00026167|Name=TCONS_00026167|organism=Clytia hemisphaerica|type=transcript|length=534bp
NNAAATGCCCAGCCCGTGGACCACACTTCAGTGGAAACATCAAAGACGAC
CATGAACCACGACAATACGTCGCTTGCTTCCACGGACAAACTGTTGGATG
TATCGCTTGCCCATCAGGACTTTTGTTCAACGAAAAATGGAACGCCTGTT
TGTACCAAGGAAAATACAAGACCGAACCAGAATCCCCACCAAAACACTAA
ACGTTGTTTTAATTGTAATCGATTCAAATGGCATGAAGATCTCAACAGCC
GATCGAAATAATGACAACAAACTAAAAACGAAAAcattttattcaatatt
tttaaactcTCAATCTTACTTAATTTTACGCCTTCTCTCAAAGGTTTTTT
ATTCTGTCACGTTGTATATTTAACTATTTAAATGCAATAAAAACAATCTC
TCTCTCTTAATCTAAACGCTNATTTAACTATTTAAATGCAATAAAAACAA
TCTCTCTCTCTTAATCCAAacgcttttttaaatttcattcaaataCCAAG
TTCATAATATATTCCCAATAGAGCATGATTAACC
Run BLAST on NCBI

transcript from alignment at sc0000563:58274..58807

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00026167 ID=TCONS_00026167|Name=TCONS_00026167|organism=Clytia hemisphaerica|type=transcript|length=534bp|location=Sequence derived from alignment at sc0000563:58274..58807 (Clytia hemisphaerica)
GGTTAATCATGCTCTATTGGGAATATATTATGAACTTGGtatttgaatga
aatttaaaaaagcgtTTGGATTAAGAGAGAGAGATTGTTTTTATTGCATT
TAAATAGTTAAATNAGCGTTTAGATTAAGAGAGAGAGATTGTTTTTATTG
CATTTAAATAGTTAAATATACAACGTGACAGAATAAAAAACCTTTGAGAG
AAGGCGTAAAATTAAGTAAGATTGAgagtttaaaaatattgaataaaatg
TTTTCGTTTTTAGTTTGTTGTCATTATTTCGATCGGCTGTTGAGATCTTC
ATGCCATTTGAATCGATTACAATTAAAACAACGTTTAGTGTTTTGGTGGG
GATTCTGGTTCGGTCTTGTATTTTCCTTGGTACAAACAGGCGTTCCATTT
TTCGTTGAACAAAAGTCCTGATGGGCAAGCGATACATCCAACAGTTTGTC
CGTGGAAGCAAGCGACGTATTGTCGTGGTTCATGGTCGTCTTTGATGTTT
CCACTGAAGTGTGGTCCACGGGCTGGGCATTTNN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_014713XLOC_014713Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00026167-exon-sc0000563-1491911889:58274..58807TCONS_00026167-exon-sc0000563-1491911889:58274..58807Clytia hemisphaericaexon
TCONS_00026167-exon-sc0000563-1510915933:58274..58807TCONS_00026167-exon-sc0000563-1510915933:58274..58807Clytia hemisphaericaexon
TCONS_00026167-exon-sc0000563-1575043694:58274..58807TCONS_00026167-exon-sc0000563-1575043694:58274..58807Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000563supercontigsc0000563:58274..58807 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.537152	0.439916	0.433181	0.131648	0	0	0	0	0	0.113943	0	0	10.4195	15.1342	646.563	160.609	8.60997	0.718542	0.261467	0.246674	0	0	0.264608	0.135124	0	0	0	0.0404247	0	0.123445
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00026167 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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