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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00026160 ID=TCONS_00026160|Name=TCONS_00026160|organism=Clytia hemisphaerica|type=transcript|length=2624bpRun BLAST on NCBI protein sequence of TCONS_00026160-protein >TCONS_00026160-protein ID=TCONS_00026160-protein|Name=TCONS_00026160-protein|organism=Clytia hemisphaerica|type=polypeptide|length=820bp MTTVTQPQTFQDQLKTLSQILEKLKTVLPDEERKGERYHSFECSTISGEQRun BLAST on NCBI transcript from alignment at sc0000563:195878..208161- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00026160 ID=TCONS_00026160|Name=TCONS_00026160|organism=Clytia hemisphaerica|type=transcript|length=12284bp|location=Sequence derived from alignment at sc0000563:195878..208161- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000563:195878..208161- >TCONS_00026160 ID=TCONS_00026160|Name=TCONS_00026160|organism=Clytia hemisphaerica|type=CDS|length=44334bp|location=Sequence derived from alignment at sc0000563:195878..208161- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00026160 vs. Swiss-Prot (Human)
Match: MED1 (Mediator of RNA polymerase II transcription subunit 1 OS=Homo sapiens GN=MED1 PE=1 SV=4) HSP 1 Score: 197.208 bits (500), Expect = 1.059e-51 Identity = 154/518 (29.73%), Postives = 256/518 (49.42%), Query Frame = 3
Query: 246 YDQFSKVQNTSNIIKHVTER--LQLTTFNQPIQDCLQNVKIKMRKLASGNSLESTIQRLESLCTEEGLRFDKDKT---IFISCDMFYIEIALDSNGMAEDVNIHFTHTGEGK-TLKELVNILRKKDFDEFHAHLKGLKQRYLMLKGDRFQKSKVLNALDILEQDIVK--IMQSDPMSSNIADNISMGPVGYITPTMGGNNLTLTYFADPLELLDTKMPGQNKELSQNNLAQDFGFSVGVGVEPHQDSLLQTASIVNVDMG----NVAYTP----LDKTNSERLAASFVLQFNKPLPVSLLTAKLLQKLTRPDTPFF--HESYASLDDLIIEQKFGMNRDDW---GKKEFFVELPNEVHAY---RCVPSKEKDNI-GVMLHKIPFTQASQIPQIIKILRCQAMYNTLVCSFFRGSKNELNGDADDERKTLVFDTQAFEGNVLTVNFIHPLDETLGSFDILVTTDAIIECHLNVLPGSPIICSNDYLNKIANRCLSVPLLLRSLMKKSKTCRPEVVAPSM 1724
++Q T +++ V E+ + + +Q + CL+ ++ ++ SL + RLES+ + GL + +I+ DMFY+E+ LD G DV + H GE + ELV LR+K+FDEF HLKGL Y L GD K+K+ AL LEQD+ K IM ++ D I G VGY+TP GG+ + L Y+ P +LLD K L +NN+++ G + V +E S + I + MG + +TP + NS L A F L+F +P+PVS + LQ T P F +YA L +LI + + + D F+ LP + H Y + P + ++ G ++ KI F ++P I+ ++R Q YNTL+ S + + L +D L F+ + +V+F HP++++L + V + C L +IC++D++ K+ RC+S+P+ +R++ +K++T + + A S+
Sbjct: 27 FNQNRPWSETIKLVRQVMEKRVVMSSGGHQHLVSCLETLQKALKV----TSLPAMTDRLESIARQNGLGSHLSASGTECYITSDMFYVEVQLDPAGQLCDVKV--AHHGENPVSCPELVQQLREKNFDEFSKHLKGLVNLY-NLPGDNKLKTKMYLALQSLEQDLSKMAIMYWKATNAGPLDKILHGSVGYLTPRSGGHLMNLKYYVSPSDLLDDKT-ASPIILHENNVSRSLGMNASVTIE--GTSAVYKLPIAPLIMGSHPVDNKWTPSFSSITSANSVDLPACFFLKFPQPIPVSRAFVQKLQNCT--GIPLFETQPTYAPLYELITQFELSKDPDPIPLNHNMRFYAALPGQQHCYFLNKDAPLPDGRSLQGTLVSKITFQHPGRVPLILNLIRHQVAYNTLIGSCVK--RTILK---EDSPGLLQFEVCPLSESRFSVSFQHPVNDSLVCVVMDVQDSTHVSCKLYKGLSDALICTDDFIAKVVQRCMSIPVTMRAIRRKAETIQADTPALSL 527 The following BLAST results are available for this feature:
BLAST of TCONS_00026160 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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