TCONS_00026159 (transcript) - C. hemisphaerica

Overview
NameTCONS_00026159
Unique NameTCONS_00026159
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2623

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00026159 ID=TCONS_00026159|Name=TCONS_00026159|organism=Clytia hemisphaerica|type=transcript|length=2623bp
GAAAACTAAAggaaactgaaaataaaagatactatcaaacaaacaaacaa
tcaaaatgactACTGTCACACAACCTCAGACTTTTCAAGATCAATTAAAA
ACACTCAgtcagattttggaaaaactgaAAACAGTATTACCAGACGAAGA
GAGGAAAGGAGAAAGATATCACTCTTTTGAATGCAGCACAATCAGTGGAG
AGCAAGAAAAAGTTACCAACACGATCAATACAATTAAAACAACTTATGAC
CAATTCAGCAAAGTTCAAAACACTTCAAACATCATAAAACATGTCACaGA
ACGGCTCCAGCTAACCACTTTCAACCAACCTATTCAAGATTGTTTACAAA
ATGTgaagataaaaatgagaaaattggCTAGTGgaAATTCACTTGAATCA
ACGATACAACGATTGGAATCTCTTTGCACTGAAGAAGGactGCGTTTTGA
TAAAGACAAGACAATTTTCATCAGTTGTGACATGTTTTATATTGAGATAG
CACTGGACAGTAATGGAATGGCTGAAGATGTCAACATTCATTTCACTCAC
ACTGGCGAAGGAAAAACTTTGAAAGAGTTGGTTAACATCTTGAGgaaaaa
agattttgatgaatttcatgCACACTTAAAAGGATTAAAACAGCGTTATC
TCATGTTGAAGGGAGATAGatttcaaaagtcaaaggTGTTAAATGCGTTG
GATATTTTGGAACAAGATATTGTTAAAATAATGCAGTCAGATCCAATGTC
AAGTAACATTGCTGACAATATTTCAATGGGTCCTGTCGGATATATCACAC
CCACAATGGGAGGGAATAATTTGACGCTCACCTATTTTGCTGATCCTTTG
GAATTGTTGGACACGAAAATGCCAGGTCAAAATAAAGAACTTTCACAAAA
TAATTTGGCACAAGATTTTGGCTTTTCAGTAGGAGTCGGTGTTGAACCGC
ACCAAGATTCCTTGCTTCAAACAGCTTCAATTGTCAATGTTGATATGGGA
AATGTTGCATACACTCCACTTGATAAAACAAACTCTGAAAGACTAGCTGC
CAGCTTCGTTCTACAGTTCAATAAACCGTTACCCGTTTCTCTATTGACTG
CTAAGCTATTACAAAAATTGACTAGGCCGGATACGCCGTTTTTCCATGAG
TCATACGCCAGTCTAGACGATTTGATTATTGAGCAAAAGTTTGGTATGAA
TAGAGACGATTggggtaaaaaggaatttttcgTCGAACTACCGAACGAGG
TTCACGCATACAGATGTGTTCCATCGAAAGAGAAAGATAATATTGGAGTT
ATGCTACACAAGATACCTTTCACCCAAGCTTCGCAAATCCCTCAGATAAT
CAAgATTTTACGATGTCAAGCCATGTACAATACTTTGGTTTGCAGCTTCT
TTAGGGGTTCAAAAAATGAACTGAACGACGATGCTGATGACGAACGCAAG
ACTTTGGTGTTTGATACTCAAGCTTTTGAAGGGAATGTTTTGACTGTCAA
TTTCATACATCCTTTAGATGAAACTTTAGGCTCATTCGATATCTTGGTGA
CAACAGATGCCATCATTGAATGTCATTTGAACGTCCTCCCTGGATCACCC
ATCATTTGCTCCAACGATTATCTCAACAAAATTGCTAACAGGTGTTTATC
AGTACCATTACTATTGAGAAGTTTGATGAAGAAATCCAAAACTTGTCGTC
CAGAGGTTGTCGCCCCATCAATGACCACACCGTCCAAGAAAACGTCACCT
CACAAAGTCTTTCAAAAACCCTTGAAACTCGTCATGCCAACCATCGCTCA
AATACAATCCAATCATCCCATCATTTCGCCTCAGTTAACCAACTCCCCTT
CAGCTTTCTTAAACTTCAGCGCAACTGGGTTATCGGGACCGCCTATTTTC
CCATCGTCCGCCCAACCGGCCGATAACAAACGAAAGCGAACGACATCGAG
CACAATTACCACGCCCACAACGCCCATGAGTGATGGCTCGCGAACGCCTT
CCACTaaactcaaaatcaaaatcaaacggAAGAAGACAGACGCATCCGAA
ACATACGAGATTGACAAAACGAGAACGGAAATGGAGGCTGCCGAGGGGCA
ATCGCATGCGGCCATTAGTGCGACACAAATACTTATGTCACAAGATTCCA
TCGATTCACTTGCTTTCGGGCTACCTTCCAACCCGGGTGATGCCACTCTG
TTGCGTTCGAACTCGGTATTTTCTGACGGCGTGACGTTTCCAGAGCTGGC
TGGCATTCCGCTTGATTCTGATGCAGACTTGGACAACTTACTAGGAATCC
CTTCGGAACCGTTCGTTCAAAGCGATACAAATTCGTCCAGTATGGGAGGG
AACGCACAACCGGCAGCTTTCGACATCGACGCGATTCGTCCACCGGGGAG
CGAGATGAATTTCGACACATTACCCACAAATGCGATTGATCCAACAttgg
tgacgtcatcagctTTCGATATCGACCCAAACAACATTGACGACATTGTT
ATGGATTCACTCATATAACCAACACACCAAATTTTAtagttttgttgata
tttttttactttttaatgtAGTATAAACTAAAACTTACAAAGCCAAATTC
ATCCtggcaaaaaaacaaaagat
Run BLAST on NCBI

transcript from alignment at sc0000563:195878..208160-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00026159 ID=TCONS_00026159|Name=TCONS_00026159|organism=Clytia hemisphaerica|type=transcript|length=12283bp|location=Sequence derived from alignment at sc0000563:195878..208160- (Clytia hemisphaerica)
GAAAACTAAAGGAAACTGAAAATAAAAGATACTATCAAACAAACAAACAA
TCAAAATGACTACTGTCACACAACCTCAGACTTTTCAAGATCAATTAAAA
ACACTCAGTCAGATTTTGGAAAAACTGAAAACAGTATTACCAGACGAAGA
GAGGAAAGGAGAAAGATGTAAGTTGTTTATGTTTTAAGAACTTTTCTCTT
GTTAAAACTGGCTTATGTTTACATCAATATTTTTGTTTTTCTTCAAAAGA
ATTCTATTCCGTTACAATGTACTTAAAGTAGATTATTTTTGAGTGGACCT
TTTAGCAAATTTAACATACATAATTTTTGCATAGATAAAAGTTTATATCA
CCTAATTTCCTTTATTATTTTGGTAAATGGTTTTTGGCCAAAAAACATCA
AAATTCAGAATTTAGATTTTTTACAAGTATATACTAAATTTCACGCAATA
GCCCAAAATTTTTAAGAATTTGCGAGAATTAAATAATTCTAGTAAAATTT
AAACAGGGTTCGATTTCTAAATCTGAATAGATCCGCACATAAAATATGAC
CAAAGCAAGGCACCTAGCATGGCAGACGAACCTTTTTTAGATCTTTCTGA
AGCGTTTTTAGAGTTTTGGGATCTAATTAGCAATGATTGTTGTAATTCTG
TGATCTCACACCTTTCAATTCTTTTACTTTGTATGAAAACCTTACTTGGC
ATTTTCTTTTTCAACAAACTATTTTCTTTGCCAAAACCTGAAAAAGACTA
AAAGACAAACGAAATTCAAATGTTACAATTTTTTCTTTAGATCACTCTTT
TGAATGCAGCACAATCAGTGGAGAGCAAGAAAAAGTTACCAACACGATCA
ATACAATTAAAACAACTTATGACCAATTCAGCAAAGTTCAAAACACTTCA
AACATCATAAAACATGTCACAGTAAAGAAGAAATTTTTAAAACAATAATT
TTTTCCTTGAATAGCTATGAAATGATTCAAATTTTCTCAAAGACCCATCA
GTGCAAACCAAAACTCAGATGCTAAGCTCGAATCTGTATAAGCATAACCA
AAACAAGTTAGCTGTGCTTTACTCCTTTAGGGGAATGCGACGGTCTTTTG
CATAACAAATTAACAAATTACTCCACACTTCAGTGGATGCAATAAAAACA
AGCAGGAAATTAGATATACCTTTTTTTTTTTTTTTTTACTTTCTCCTGAA
TTAGCACCTGACAACGCTGCGAATCTTCCCGTGCGACGTCCAATAAAGTA
TTAGCTTGAGTACTAGGGTTTTATTTCCATAATGCGGAGCAGATAATTTC
TGGCCCGAATGGCTGTAGAAATTCAATATGCAGAACTGATTCAATAGGTT
GTTGCGTTCTCTTAAACGACTATTTGAAATCAATCCTTCTTCCCCTTTTA
GGAACGGCTCCAGCTAACCACTTTCAACCAACCTATTCAAGATTGTTTAC
AAAATGTGAAGATAAAAATGAGAAAATTGGCTAGTGGTTAGTACACTGAT
TTTGATCAGGCTAACTTTAAGATAACATTGGTTAATTTTCAATTGTGTAA
GAAATCTTTAGAACGAGGATTTTAGGTCAGTCTTGTACCTCTTATTGGTT
TTGATTACTTTTACTTTTGCTGTCAGCCATGATTTTAAATCATGATGAAA
TCATGTAAACTACTTCGTTCAATTAGAAGGTAACAGTTTCATGGCTGTTA
ATTTTTTTCTAAGGAAATTCACTTGAATCAACGATACAACGATTGGAATC
TCTTTGCACTGAAGAAGGGTAAGAATTTGTCACGGGTCTCATAAATAATA
ATGCAATATTACAACAATGCACTAACTGGATCATCAGTTTGTTGCAAAAC
TTTCTAAATTAAAGTACTTTAGAACGCCATTGTTGCAATCTTTCTCTGTC
TTAAAACTTTTTGCAATAATTTTTTCTCTGCCTATTTGTCAAGAATAAGG
TTTCAATCATTAACCCATAAAACCTAAGCAAAACTCATTTAATAAATTAA
TGTCTGAAACCTTATTATGTTCGTTGAGAAAGATTGACCGGTTGGTAATA
TATTTCTTATTATTTTTTTATTTTCAGACTGCGTTTTGATAAAGACAAGA
CAATTTTCATCAGTTGTGACATGTTTTATATTGAGGTAATGGTTTAAGCA
GGTGTTTCTTAATTACAGATTTGAGATTTGTATACAAAAAAGGCCAACAA
AATGTGTCAACAAAAAAAAACAGAAAAATATTATTTCTTTTGACGATGTT
CTTTATTCTACGCCAACCCCAGTTTTTTGGCCTCTTGGCAGATTAAGGAT
CAGGGTTAAATAGGCTCGCTAAAAATTGGCCTAATTTTTTAATTTTCTTT
TTTTACGTAAGTGGTGATTTTTGGCTGCTTTACCTTTGAAGTAAATTGTG
AAAAAGCGAAGAAAATTATTCATTCTCTTTAAGTATAAATCTTCACATTT
TCAATGAAATTGTCACTATTTCCAAGCCCAGCTGGGACATTTGAATTTAA
TTGAGTTAATTTGACTGTTTTGAAGCCAATTTACGGATTCGTAGGTTTTG
GCATTTTAAGACTGAAAATTTGTCAGTAGCCGATTAAGGGTTGGAATAAA
AAAGGCCGGCGTAAAAAAGGCCAATATGGTATATGTTATGTATGTGCGAA
TCCTTAGAGATGTTCTTTATTTATATGTATATTGCTAAAAGTTCTGTGTT
GATACATATTGACTTCCTGATGATTATAATTTATTTTCCTTCAATAGATA
GCACTGGACAGTAATGGAATGGCTGAAGATGTCAACATTCATTTCACTCA
CACTGGCGAAGGAAAAGTTTGTCTATTCATACTCTGTTCATACTCTGTTC
ATACTCTGTTTTAACACTTTTGTTAACCTTGCAGTCTGAACTTACATGGC
ATGTTGCTCACTTCATTAAAACAAAGTCTGTAAAAAAGGCTGGTCTGGGA
GCCTTTTGTTTCTTTGTGTTTGCGTTGTTTTGCTCACTTTTTGATCATTT
GATTAATTTTTAACTAATCCCAATAATAAATTTGAAATTAGATTTAAAGT
GAAAAACTGAAGGCCCTTGCTTACCTAGAATGGAAATGGAAAGAAAGAAT
TTCTTATTCTTTATTTTGATTATGTTTCGTGTTATCACTTTTTAGACTTT
GAAAGAGTTGGTTAACATCTTGAGGTAAGATTTTTCCATATTTTTCTTGT
ATGATTTGATTTATTAAACCTGGAGAAAGATTTTGATTCTTCATAATTTC
ATACACAAATATATAACGAAATGGTAAAGAGTTTAAAATATAATGTTTAA
AGACTTTGATCTAAAACAGATCGTCGATTAAATTTTTTTTCCTCTCATTA
TAGGAAAAAAGATTTTGATGAATTTCATGCACACTTAAAAGGATTAAAAC
AGCGTTATCTCATGTTGAAGGGAGATAGGTAAATACCATGTTTCCTTCTT
GTGCCTTGACTTTGAGAGTGGAGAGGCAATGTGTAACTATGCCAACAAAT
TTCGATTTTAACACCATGTTATACGTCAAATCGCCCTATATCAGACCGAC
CTTTGCAATGCAAATGAGTTTGAATATTTAGCCCATCCCCTGCTCTTCAT
CGATTTTGAAACTTAACTCAATTTTCTTCTTGGTTTAGATTTCAAAAGTC
AAAGGTGTTAAATGCGTTGGATATTTTGGAACAAGATATTGTTAAAATAA
TGCAGTCAGATCCGTAAGATTTATCATAGATTTTCACGTAAACAAATGTT
CCTTCCAGTAATGAATTACTCTAGATTTTCCTTCGAAGACAGAGTTTCGT
TTCACAAATTTTTAAAAAAAGTCATTCTCAAAATTATGCAAGCTCAATAA
AATATCAATAATCTGGGCTACTTTTTTAATGTAAAAGTCCATTTTCCATG
TGAGATGAAAAATTTTACTTTGAAAAACTAGTACCCGTAAATCCTCGAAT
AAGCACCCGGGCGTTTATTTCATTTTTCTGGCTCTAAGGGGGGCGCTTAT
TTAAGCAGGGCGCTTATTCGAGCGGGGCGCTTATTTTTTTATTTCAGAAA
TTCGTATATCAACAAATTCGGAATCTGCTTAAACTTAACTGTTTCAAAGG
GTTGATTTTTCAAAAAAGGATGAATAAAAGAAAAATTGGAAAAATCCAAT
TGACAATGTCTATCATTTTATTCTTAGTCGCTTTCTTTCTTTTTAAGACA
CAAGTATCTACTCAATATCTTATTCAATCAATAACAATATTCGAATAAGC
GCCCCTCCTGGAGGGGGGCGCTTATTCAAGCGGGGCGCTTATTTGAGGAT
TTACGGTATGTAAAATTACACGTGTGTTCTGTCCAAATGTGCCAATCTCA
CACTGTTTCATATTTTTCTCATTGATTTCTTTGGTAGAATGTCAAGTAAC
ATTGCTGACAATATTTCAATGGGTCCTGTCGGATATATCACACCCACAAT
GGGAGGTAAGAGTTAAGGTGAACATTTTGTTATTGATGTCTCTTAATGAG
GGATTTTTCAGCTTCTCCTCCCTTAAAATTATTAAGTAAGTAAATAAAAT
GATAACAAAATGATAAATGCTGTCATCTGACATTTTCTTCCCACAATCTA
CACCAATTAACTCAAAAAAGTAAATGGTTTCAAGTCGATGACCTGGTGAA
ACATAGACTTTATTACTTTTCCATACGCAATGTTTATCATTTCTAATATT
CAGGGAATAATTTGACGCTCACCTATTTTGCTGATCCTTTGGAATTGTTG
GACACGAAAATGCCAGGTCAAAATAAAGAACTTTCACAAAATAGTAAGTA
TTGCTTCTTTTTTTAAAAGATATTTTACAGGATGTTTATAAATTTAGCAT
GTCCCCTAGGCAGCAATTACTACGCTGATGGTATTTACTACTTTGTCTTC
TTAGTAGGCCCGACTGGTAACAAATATCATAAAATATCACAATATTTATA
CTACAACATTCGGTACAAAGCGCCAAATTTGGACAAGACATGCCTAATAC
CCTATGTGTTGATATTAGAATATGAAGCATTTATTAAAAACCTAGTTTAC
AGGGTCTGATTTTATCGGGAATTTCAAACCCATTTCAGGTCCAAACCAAT
TATAGAATATGAATGCTCTCGAAAAAAATATAAGTATGGCCGATTTCTGT
ACTGAGAGGGAGTTATTTGACGCAGGATTTTTAGTATTTCTGTGTATTAA
TTCGGTACCATTTTTCCTGTACACAACATGTAACATCTTCAATTTCATAA
TGCAAGTTTTCGTTTTGTTGTAGCTTTTTCCCATTTTTGTCCATAGATTT
GGCACAAGATTTTGGCTTTTCAGTAGGAGTCGGTGTTGAACCGCACCAAG
ATTCCTTGCTTCAAACAGCTTCAATTGTCAATGTTGATATGGGAAATGTT
GCATACACTCCACTTGATAAAACAAACTCTGAAAGACTAGCTGCCAGCTT
CGTTCTACAGTTCAATAAACCGTTACCCGTTTCTCTATTGACTGCTAAGC
TATTACAAAAATTGACTAGGCCGGATACGCCGTTTTTCCATGAGTCATAC
GCCAGTCTAGACGATTTGATTATTGAGCAAAAGTTTGGTATGAATAGAGA
CGATTGGGGTAAAAAGGAATTTTTCGTCGAACTACCGAACGAGGTTCACG
CATACAGATGTGTTCCATCGAAAGAGAAAGATAATATTGGAGTTATGCTA
CACAAGATACCTTTCACCCAAGCTTCGCAAATCCCTCAGATAATCAAGGT
ATTATTTTTTATAAGTTATATCACCATAAGGTTGTCGGGTTGGATTATAT
TAGGATCAAGCTGTTGACACTCTGCAGAGAGGCATCAAGTACCATTTTGG
GAATCTTTGGTATGATCCCGCTGGGAGTTGAACCCACAATCTTACGAACC
GTAGCCGGATGCTCTACCACTGCACCACGGTCGCAAACTAATCACATGCG
GTTGTGTCCCACGATAGATGAGTACGGATCCTAAAGGTTGGCCCCTTTCT
ATATAAAATGTATAAACTCTGTATAACTTGTCTTTTCGTAAGTGTAGGTT
TCTTTAGTTCAAAGCTTTATATTTCATGTGATAACGTATGACAGCCTTCT
TAAAAAAGGCTAAATTTGATTGAGTTGTCGGTTCGAAAGTTCAAAGTACT
CTCTTTTCTTTTCTACAGATTTTACGATGTCAAGCCATGTACAATACTTT
GGTTTGCAGCTTCTTTAGGGGTTCAAAAAATGAACTGAACGGTATATAGA
TTGTCTACAAATATTGCACATCAATTGTAGATGTGTTTTTTTACCGTATA
GAACTGTTAAAGTTTCTTTCTACTCAACAAACTTTCGACACACAAAGCTC
TTCTTTTGTCCTAGGGAAAACAAGCCCGCATATTAAATAGACCTACAGTT
GACTCTCGCTTATCCGACCTCGAACGGAGAATCTTATTTGTTCGAATTAT
AGAGAGATTCGAACAATAGAAAGTATTTTAAGAGTGTTTCTCCTTCAAGG
AGACTGGAAATTGTAGAAGAAGACTCGAATTGTAGAAAGGTTTGAATAAA
AGAAGTTATAAGCGAGAGTCTAATGTATTTTCGAATGACATGAGTGTTGT
TTTTCTGACGTCATCAGTAAAGAGATGACATCAAGTCGCTCTCTTAAAAA
AACTTCTCCAAATGACCAAAGCACCGACCACCTATTTCCCCGAATTTCAG
AACTTTATACCTCTTTGAAATGTTTTGTCATAAGAACCAAGGCTACATTG
ACAGTTATCGTATGTTTTGTGAAGCTATTTTTCGGTTATTAGAAGATGCC
CGGGCCCTTTCTTACTAAACCAATCGTAACTATTTACCTTTTTTAGACGA
TGCTGATGACGAACGCAAGACTTTGGTGTTTGATACTCAAGCTTTTGAAG
GGAATGTTTTGACTGTCAATTTCATACATCCTTTAGATGAAACTTTAGGC
TCATGTAAGTCAAAGATTTCCCGCCTTTGTTGGTTTAAGATTTTCTTTTT
TAAGGCANAAACTTTAGGCTCAAGTAAGTTAAAGATTTCCCGCCTTTATT
GGTTTAAGATTTGCTTTTTTAAGACACTTCTTTTAGCTGTCTTCATACGT
ATTACTTGGTATGAAAAGTCATGAAGGTGGTGATATGCTTATTACTAAAA
TTTCCTCTGACTTTCTCTTTCAGTTCTTGGGTGACGGAGGAATAAACACG
ATCCGTCATGGACTTTGAACTTTTCTCCAAGGTCAAGTCTGCTTTCTAGG
AAAAGCGATCACTTCTTAAGAATCTCAATATTCTGATACATAATAAAGCA
TTTCCCTTCTTTTCTTTCAGTCGATATCTTGGTGACAACAGATGCCATCA
TTGAATGTCATTTGAACGTCCTCCCTGGATCACCCATCATTTGCTCCAAC
GATTATCTCAACAAAATTGCTAACAGGTATAATCGACGCCGTAACGAACA
TAATTCCTCTTTTCTATCTATAGATATAGATATTTTTCTTGGTATTATAT
TATTGTAGAAGTGTTTCCAGTTGAGCCGTTTGATCCTTATAGTCTTATTC
ACCCTTCATTTTATCAATCAGGTGTTTATCAGTACCATTACTATTGAGAA
GTTTGATGAAGAAATCCAAAACTTGTCGTCCAGAGGTTGTCGCCCCATCA
ATGACCACACCGTCCAAGAAAACGTCACCTCACAAAGTCTTTCAAAAACC
CTTGAAACTCGTCATGCCAACCATCGCTCAAATACAATCCAATCATCCCA
TCATTTCGCCTCAGTTAACCAACTCCCCTTCAGCTTTCTTAAACTTCAGC
GCAACTGGGTTATCGGGACCGCCTATTTTCCCATCGTCCGCCCAACCGGC
CGATAACAAACGAAAGCGAACGACATCGAGCACAATTACCACGCCCACAA
CGCCCATGAGTGATGGCTCGCGAACGCCTTCCACTAAACTCAAAATCAAA
ATCAAACGGAAGAAGACAGACGCATCCGAAACATACGAGATTGACAAAAC
GAGAACGGAAATGGAGGCTGCCGAGGGGCAATCGCATGCGGCCATTAGTG
CGACACAAATACTTATGTCACAAGATTCCATCGATTCACTTGCTTTCGGG
CTACCTTCCAACCCGGGTGATGCCACTCTGTTGCGTTCGAACTCGGTATT
TTCTGACGGCGTGACGTTTCCAGAGCTGGCTGGCATTCCGCTTGATTCTG
ATGCAGACTTGGACAACTTACTAGGAATCCCTTCGGAACCGTTCGTTCAA
AGCGATACAAATTCGTCCAGTATGGGTAAAGTTAAAAGAGTCGTTCTTTT
TTGCCTTAAGTTTAATTGGACGCCTTTTTTCGCCCGAGGATCCTTTCTTA
AACAAGTTTCTCTAATTTTTTTATACTTTCATTTTGCAAGGAGGGAACGC
ACAACCGGCAGCTTTCGACATCGACGCGATTCGTCCACCGGGGAGCGAGA
TGAATTTCGACACATTACCCACAAATGCGATTGGTAAGAGGCGTACTGTT
TTATAAGTTTAATATTAAGTAACTAATTTTGGCAAAGAGCAAAATTCCTT
GTAAAGAATTAATTTTCACACAAATTTTTAATTATAGCGAATGACAGGAT
AATTTTGTCAGTTCTTGCCTGGAAAGGAGAGGTTTAAAACAAAACAAGGG
AATCATTTAAAATCTTTTTGAAAAAAAAAACTTAACTTCGACGAGATTTT
ATCATGGTGAGCTAGCAAGCAATTATATTTTGATCCCTTAGCATTTCATC
CCTTCTCTTGTAATTGAAACTATGATACTGGTCTTCTGCTGCCTCGGACA
CTGTTGATCTTATTGCCGTAAATTATACGACTATTGGATATGTAATTTAA
CATCTGGGCATAAGTAACTTGTTTCCCGCTTTTTTCGAAACAAGAACTTC
CTTTAAAATACTCCAAATAGAGAAATTGTAGAATTGGTATTTTGAGTCTG
AATTTCAGCTCACCATAAAACTATTTGTATGTAAATATAGACTCGGCATC
TTCGAAAATTGTTGGATTTATTATCGAGTAACAGGACAAAATGTGAAATA
CACTTTGGTACGGAGTGCAAAACTATAGTTAGTAACCATAATAGTTTCAA
ATCAAAACAATTCAAATCGGATAGGCTGATCAAAAGAATCTCTTTTTTAT
AAGCGAGAGCAAAGCTAATATTATGAAATATATTGGAGAAATATTATTTA
AAATAGCAATTTATTATTTTTCGATAATTAAATAGAGGTTTTGCCTCAAA
GATAATGTAATAATAGAAAGGATAAAAATCTTGTCACGAAAGAGAGGAAA
ACTCTTGAAAATTATTCTACTCAGCTAATATCAAAGTCAAAATGGATTGC
CATGAGCTGAACTTTTCCTTTGCATCCTCAGCATTGGTCAACTACCAAAT
CATTCGATTCTCATATTGTGTTCTGTTGGTTGCAACAATATCAGTCAATA
TTGCGGTGTTATACGCCTTCTACAATCTTTCTTTCCACAAATCAACCCAT
CATCGATTACTCATTGTCTTATTACTGATGGACTTGTCGACTTCGGTAGC
CATCCATCCTCTGCAAATCTACCGATATCATTTTTACGCTTTGAAAGAGA
AAAGTTGTATGATTCTTGTCTGGATGAGTTTCCTTTCGACCGCGTTAATG
TTAATGTCGCTGACTGTGATCATTTTGATCAGTGGAGATCAATATTTTAA
AATTGTCCGGCCGTTTTATCGATTCCCAGTCCGGAAAAACAGTATCATTT
CTCATTGCGGTGTTTTGGATAATCTCAACGTTGGTGGCCTTCCTGGCTTA
TATCGTCTTCCCAAAGTTTTTGAGCACCTTTTTCACTGTTATAGGAATTG
TCGTGATGATTTTGTACATTGGTCTGTGTTATATACAGTACCGTATCAAT
CGAGAATGTGTTTTGATGGTTGTTAGGGGTAACCATGATGAAGACACGCG
AATTCAGTTACGAGCTGCTCGAATGTCGAAAAGCATCCTGATGGCGTTTA
CTTTCTGTTTTTTACCCAGCGCAATCGTTAGTTCTGTTGTCAGGGGAATG
TCCCTTGGAAACGGTGGTGTTGTCATGGATACCTACTTGTTACCATGGTT
GACTTTCATTTTGCTCTTAAACCCGTTCATTGACCCCATGATTTATTGCA
TTCGTTTAAAATCTGTGAAAAACTTTTTGCTTGGTTCGTTATGTGGACGG
GTCAGACTCAATCGTGTTTCGTTTTCACAGACTAGTACAAAAACTGAGTG
TTAATGTGCATGCTCGGTGTTATCCATTTAAACATTTTTATGAACATATT
ATGATTCGGGTCGGTTTCTGCCATCTCAACGAGCATAAATTTAGACATGG
CTTCCGCGACACTTTAAACCCTTTCTGTGGTTGCCGAACTAACTCTGTTG
AAAACACTCAGCACTTTATTCTGCACTGCTCTATATATTCCCATGCAAGA
CAATCTTTGTTCGACAAACTTAACCCTCCTTTTTTCTGTCGTATAACATC
TTCGAACGTTTTACTATCTTATTTAAAGATGTCAATTTCATTGTTTTTTT
CTCTTTAATTACAAAACGTTCGAATTTGCGTTCTCTTTTGTTAAAAAGAA
CTTTCTTTTATCTGTTATATTTATGTGACATTTAAATAATTATTTGATCA
AAAAAACTATTTCCTTTATGCTCGCTGCTACAGAAGAGGTATTTTGCTAT
CGGATATCTAAAAATATTCGACAATGCGTTTTGCATAGAGGTGGACGATA
AATATATACATGATTCACTTCTTTGTCAAAGTCTAAAGACGAGGAACCTA
AACGACCACAAATGATAGATCATCAGTTTGAGATATATAGCGGACCGGGG
GGGGGGGACTAGGGCAAGATGGGTTCCGGGGATGCGCCGCGTGTCAGGGT
ACCTTTTCTAACCGCCACGAGTCCCAGGTAGGGTCGCAAAAATCCCAAAA
TAGAAAAATCAGTCCCTCGTAGGGGGCCTTTTTTTGGAAAATTTGCGGAA
AAAGTAGAAAATGTTGGAATTTCAGTCCCATTCAGGGTCACTTTTTTCGC
AAATTTCGAGTCCCACGTAGGGTCCATTTTTCGAACCTCAGCGGAGCACC
CCCGGCGGTCGACAAGGGTAGTACCCCCCCCCGGGGAACAAAATAGATTG
TGTTATTATTTAAGTTTTTTTTTTTTAAAAATTGAAAAAAAAAAGAAACC
AAAACATACAAAAACGAAAAATCACATTTTGGAAATCCTAGGGGGCCGGG
GGGGGGGGTATTAGGGCAAGATGGGTTCCGGGGATGCGCCGCGTGTCAGG
GTACCTTTTCTAACCGCCACGAGTCCCAGGTAGGGTCGCAAAAATCCCAA
AATAGAAAAATCAGTCCCTCGTAGGGGGCCTTTTTTTGGAAAATTTGCGG
AAAAAGTAGAAAATGTTGGAATTTCAGTCCCATTCAGGGTCACTTTTTTC
GCAAATTTCGAGTCCCACGTAGGGTCCATTTTTCGAACCTCAGCGGAGCA
CCCCCGTCGGTCGACAAGGGTAGTACCCCCCCCCGGGGTAAAAATATAGA
TTGTGTTATTATTTAAGTTTTTTTTTATTAAACGTAATTTTACTCAAAAT
ATGCAATTTGATAATCTTCAGTTATATTTCATTTGTCATTGCTCAAACGA
TATCAAGTACGGGCTTGTACATTTTTGAACAAGAGCAAGTAATTAGCTTC
TGTTCTGACTTAATGTTTTCTACGGAAACACCGATTTTTACCAAAAGTGG
CAAATCCTTTGCTTGTAGATTACTTTCATGGTCCTAAGCAAAACTTCCAA
ATCGTTTTGTCTAATAACTCTTATCCAAAGTTAAGATATTCAAGTAACAA
GTTTTTGACTTAATAGAACTTGAGAACCGTTTCAGGACCGTTTAAAGATT
TCAAATTGTCAAATCTTGACAAAAAAATGAAGGTTTTGATGCTCAGGACC
ACGAAAATAATCTGCATACAAAATATCTCAAACCATTTGAATATCCCTTT
AAGCTAGCGGATAAATTGTTAAAATATACCACTACTGGTAAAAACTGGGG
TGTTACCCTGAAAACATTACGTAATGAATTTATGAATTTTCGTTTCAGAT
CCAACATTGGTGACGTCATCAGCTTTCGATATCGACCCAAACAACATTGA
CGACATTGTTATGGATTCACTCATATAACCAACACACCAAATTTTATAGT
TTTGTTGATATTTTTTTACTTTTTAATGTAGTATAAACTAAAACTTACAA
AGCCAAATTCATCCTGGCAAAAAAACAAAAGAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_014706XLOC_014706Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00026159-exon-sc0000563-1575043694:207994..208160TCONS_00026159-exon-sc0000563-1575043694:207994..208160Clytia hemisphaericaexon
TCONS_00026159-exon-sc0000563-1575043694:207240..207370TCONS_00026159-exon-sc0000563-1575043694:207240..207370Clytia hemisphaericaexon
TCONS_00026159-exon-sc0000563-1575043694:206675..206759TCONS_00026159-exon-sc0000563-1575043694:206675..206759Clytia hemisphaericaexon
TCONS_00026159-exon-sc0000563-1575043694:206393..206447TCONS_00026159-exon-sc0000563-1575043694:206393..206447Clytia hemisphaericaexon
TCONS_00026159-exon-sc0000563-1575043694:206026..206083TCONS_00026159-exon-sc0000563-1575043694:206026..206083Clytia hemisphaericaexon
TCONS_00026159-exon-sc0000563-1575043694:205345..205413TCONS_00026159-exon-sc0000563-1575043694:205345..205413Clytia hemisphaericaexon
TCONS_00026159-exon-sc0000563-1575043694:204987..205015TCONS_00026159-exon-sc0000563-1575043694:204987..205015Clytia hemisphaericaexon
TCONS_00026159-exon-sc0000563-1575043694:204733..204807TCONS_00026159-exon-sc0000563-1575043694:204733..204807Clytia hemisphaericaexon
TCONS_00026159-exon-sc0000563-1575043694:204448..204522TCONS_00026159-exon-sc0000563-1575043694:204448..204522Clytia hemisphaericaexon
TCONS_00026159-exon-sc0000563-1575043694:203706..203773TCONS_00026159-exon-sc0000563-1575043694:203706..203773Clytia hemisphaericaexon
TCONS_00026159-exon-sc0000563-1575043694:203368..203457TCONS_00026159-exon-sc0000563-1575043694:203368..203457Clytia hemisphaericaexon
TCONS_00026159-exon-sc0000563-1575043694:202413..202864TCONS_00026159-exon-sc0000563-1575043694:202413..202864Clytia hemisphaericaexon
TCONS_00026159-exon-sc0000563-1575043694:201920..201992TCONS_00026159-exon-sc0000563-1575043694:201920..201992Clytia hemisphaericaexon
TCONS_00026159-exon-sc0000563-1575043694:201207..201314TCONS_00026159-exon-sc0000563-1575043694:201207..201314Clytia hemisphaericaexon
TCONS_00026159-exon-sc0000563-1575043694:200735..200840TCONS_00026159-exon-sc0000563-1575043694:200735..200840Clytia hemisphaericaexon
TCONS_00026159-exon-sc0000563-1575043694:199886..200589TCONS_00026159-exon-sc0000563-1575043694:199886..200589Clytia hemisphaericaexon
TCONS_00026159-exon-sc0000563-1575043694:199678..199770TCONS_00026159-exon-sc0000563-1575043694:199678..199770Clytia hemisphaericaexon
TCONS_00026159-exon-sc0000563-1575043694:195878..196062TCONS_00026159-exon-sc0000563-1575043694:195878..196062Clytia hemisphaericaexon
TCONS_00026159-exon-sc0000563-1510915933:207994..208160TCONS_00026159-exon-sc0000563-1510915933:207994..208160Clytia hemisphaericaexon
TCONS_00026159-exon-sc0000563-1510915933:207240..207370TCONS_00026159-exon-sc0000563-1510915933:207240..207370Clytia hemisphaericaexon
TCONS_00026159-exon-sc0000563-1510915933:206675..206759TCONS_00026159-exon-sc0000563-1510915933:206675..206759Clytia hemisphaericaexon
TCONS_00026159-exon-sc0000563-1510915933:206393..206447TCONS_00026159-exon-sc0000563-1510915933:206393..206447Clytia hemisphaericaexon
TCONS_00026159-exon-sc0000563-1510915933:206026..206083TCONS_00026159-exon-sc0000563-1510915933:206026..206083Clytia hemisphaericaexon
TCONS_00026159-exon-sc0000563-1510915933:205345..205413TCONS_00026159-exon-sc0000563-1510915933:205345..205413Clytia hemisphaericaexon
TCONS_00026159-exon-sc0000563-1510915933:204987..205015TCONS_00026159-exon-sc0000563-1510915933:204987..205015Clytia hemisphaericaexon
TCONS_00026159-exon-sc0000563-1510915933:204733..204807TCONS_00026159-exon-sc0000563-1510915933:204733..204807Clytia hemisphaericaexon
TCONS_00026159-exon-sc0000563-1510915933:204448..204522TCONS_00026159-exon-sc0000563-1510915933:204448..204522Clytia hemisphaericaexon
TCONS_00026159-exon-sc0000563-1510915933:203706..203773TCONS_00026159-exon-sc0000563-1510915933:203706..203773Clytia hemisphaericaexon
TCONS_00026159-exon-sc0000563-1510915933:203368..203457TCONS_00026159-exon-sc0000563-1510915933:203368..203457Clytia hemisphaericaexon
TCONS_00026159-exon-sc0000563-1510915933:202413..202864TCONS_00026159-exon-sc0000563-1510915933:202413..202864Clytia hemisphaericaexon
TCONS_00026159-exon-sc0000563-1510915933:201920..201992TCONS_00026159-exon-sc0000563-1510915933:201920..201992Clytia hemisphaericaexon
TCONS_00026159-exon-sc0000563-1510915933:201207..201314TCONS_00026159-exon-sc0000563-1510915933:201207..201314Clytia hemisphaericaexon
TCONS_00026159-exon-sc0000563-1510915933:200735..200840TCONS_00026159-exon-sc0000563-1510915933:200735..200840Clytia hemisphaericaexon
TCONS_00026159-exon-sc0000563-1510915933:199886..200589TCONS_00026159-exon-sc0000563-1510915933:199886..200589Clytia hemisphaericaexon
TCONS_00026159-exon-sc0000563-1510915933:199678..199770TCONS_00026159-exon-sc0000563-1510915933:199678..199770Clytia hemisphaericaexon
TCONS_00026159-exon-sc0000563-1510915933:195878..196062TCONS_00026159-exon-sc0000563-1510915933:195878..196062Clytia hemisphaericaexon
TCONS_00026159-exon-sc0000563-1491911889:207994..208160TCONS_00026159-exon-sc0000563-1491911889:207994..208160Clytia hemisphaericaexon
TCONS_00026159-exon-sc0000563-1491911889:207240..207370TCONS_00026159-exon-sc0000563-1491911889:207240..207370Clytia hemisphaericaexon
TCONS_00026159-exon-sc0000563-1491911889:206675..206759TCONS_00026159-exon-sc0000563-1491911889:206675..206759Clytia hemisphaericaexon
TCONS_00026159-exon-sc0000563-1491911889:206393..206447TCONS_00026159-exon-sc0000563-1491911889:206393..206447Clytia hemisphaericaexon
TCONS_00026159-exon-sc0000563-1491911889:206026..206083TCONS_00026159-exon-sc0000563-1491911889:206026..206083Clytia hemisphaericaexon
TCONS_00026159-exon-sc0000563-1491911889:205345..205413TCONS_00026159-exon-sc0000563-1491911889:205345..205413Clytia hemisphaericaexon
TCONS_00026159-exon-sc0000563-1491911889:204987..205015TCONS_00026159-exon-sc0000563-1491911889:204987..205015Clytia hemisphaericaexon
TCONS_00026159-exon-sc0000563-1491911889:204733..204807TCONS_00026159-exon-sc0000563-1491911889:204733..204807Clytia hemisphaericaexon
TCONS_00026159-exon-sc0000563-1491911889:204448..204522TCONS_00026159-exon-sc0000563-1491911889:204448..204522Clytia hemisphaericaexon
TCONS_00026159-exon-sc0000563-1491911889:203706..203773TCONS_00026159-exon-sc0000563-1491911889:203706..203773Clytia hemisphaericaexon
TCONS_00026159-exon-sc0000563-1491911889:203368..203457TCONS_00026159-exon-sc0000563-1491911889:203368..203457Clytia hemisphaericaexon
TCONS_00026159-exon-sc0000563-1491911889:202413..202864TCONS_00026159-exon-sc0000563-1491911889:202413..202864Clytia hemisphaericaexon
TCONS_00026159-exon-sc0000563-1491911889:201920..201992TCONS_00026159-exon-sc0000563-1491911889:201920..201992Clytia hemisphaericaexon
TCONS_00026159-exon-sc0000563-1491911889:201207..201314TCONS_00026159-exon-sc0000563-1491911889:201207..201314Clytia hemisphaericaexon
TCONS_00026159-exon-sc0000563-1491911889:200735..200840TCONS_00026159-exon-sc0000563-1491911889:200735..200840Clytia hemisphaericaexon
TCONS_00026159-exon-sc0000563-1491911889:199886..200589TCONS_00026159-exon-sc0000563-1491911889:199886..200589Clytia hemisphaericaexon
TCONS_00026159-exon-sc0000563-1491911889:199678..199770TCONS_00026159-exon-sc0000563-1491911889:199678..199770Clytia hemisphaericaexon
TCONS_00026159-exon-sc0000563-1491911889:195878..196062TCONS_00026159-exon-sc0000563-1491911889:195878..196062Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000563supercontigsc0000563:195878..208160 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
51.1263	47.3054	27.1971	18.8562	19.5632	14.5318	14.3822	14.6264	8.29522	14.556	11.8983	8.25963	6.97437	6.64259	12.405	17.2864	11.5083	12.4491	8.58783	7.04719	7.92495	6.10975	32.6029	28.9683	10.135	6.9603	3.59032	7.33382	21.7142	29.8025
Blast
[Close]
BLAST of TCONS_00026159 vs. Swiss-Prot (Human)
Match: MED1 (Mediator of RNA polymerase II transcription subunit 1 OS=Homo sapiens GN=MED1 PE=1 SV=4)

HSP 1 Score: 197.978 bits (502), Expect = 6.932e-52
Identity = 154/518 (29.73%), Postives = 257/518 (49.61%), Query Frame = 2 
Query:  245 YDQFSKVQNTSNIIKHVTER--LQLTTFNQPIQDCLQNVKIKMRKLASGNSLESTIQRLESLCTEEGLRFDKDKT---IFISCDMFYIEIALDSNGMAEDVNIHFTHTGEGK-TLKELVNILRKKDFDEFHAHLKGLKQRYLMLKGDRFQKSKVLNALDILEQDIVK--IMQSDPMSSNIADNISMGPVGYITPTMGGNNLTLTYFADPLELLDTKMPGQNKELSQNNLAQDFGFSVGVGVEPHQDSLLQTASIVNVDMG----NVAYTP----LDKTNSERLAASFVLQFNKPLPVSLLTAKLLQKLTRPDTPFF--HESYASLDDLIIEQKFGMNRDDW---GKKEFFVELPNEVHAY---RCVPSKEKDNI-GVMLHKIPFTQASQIPQIIKILRCQAMYNTLVCSFFRGSKNELNDDADDERKTLVFDTQAFEGNVLTVNFIHPLDETLGSFDILVTTDAIIECHLNVLPGSPIICSNDYLNKIANRCLSVPLLLRSLMKKSKTCRPEVVAPSM 1723
            ++Q      T  +++ V E+  +  +  +Q +  CL+ ++  ++      SL +   RLES+  + GL      +    +I+ DMFY+E+ LD  G   DV +   H GE   +  ELV  LR+K+FDEF  HLKGL   Y  L GD   K+K+  AL  LEQD+ K  IM     ++   D I  G VGY+TP  GG+ + L Y+  P +LLD K       L +NN+++  G +  V +E    S +    I  + MG    +  +TP    +   NS  L A F L+F +P+PVS    + LQ  T    P F    +YA L +LI + +   + D         F+  LP + H Y   +  P  +  ++ G ++ KI F    ++P I+ ++R Q  YNTL+ S  +  +  L +D+      L F+      +  +V+F HP++++L    + V     + C L       +IC++D++ K+  RC+S+P+ +R++ +K++T + +  A S+
Sbjct:   27 FNQNRPWSETIKLVRQVMEKRVVMSSGGHQHLVSCLETLQKALKV----TSLPAMTDRLESIARQNGLGSHLSASGTECYITSDMFYVEVQLDPAGQLCDVKV--AHHGENPVSCPELVQQLREKNFDEFSKHLKGLVNLY-NLPGDNKLKTKMYLALQSLEQDLSKMAIMYWKATNAGPLDKILHGSVGYLTPRSGGHLMNLKYYVSPSDLLDDKT-ASPIILHENNVSRSLGMNASVTIE--GTSAVYKLPIAPLIMGSHPVDNKWTPSFSSITSANSVDLPACFFLKFPQPIPVSRAFVQKLQNCT--GIPLFETQPTYAPLYELITQFELSKDPDPIPLNHNMRFYAALPGQQHCYFLNKDAPLPDGRSLQGTLVSKITFQHPGRVPLILNLIRHQVAYNTLIGSCVK--RTILKEDSPG---LLQFEVCPLSESRFSVSFQHPVNDSLVCVVMDVQDSTHVSCKLYKGLSDALICTDDFIAKVVQRCMSIPVTMRAIRRKAETIQADTPALSL 527
The following BLAST results are available for this feature:
BLAST of TCONS_00026159 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
MED16.932e-5229.73Mediator of RNA polymerase II transcription subuni... [more]
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