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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00026156 ID=TCONS_00026156|Name=TCONS_00026156|organism=Clytia hemisphaerica|type=transcript|length=866bp
CAATGCAGAACAAGCTTTGATTTCCAGCAACAAGTTTAGATGAAGACTGA
AAACCCCTGATTGCTCTACGATCAACTGATTCTTATAtgttgaaaattga
tccatGAAAAGTTTAGGGAAAGTTGTGTTGTGGGTTGTCCAGCTCTTCAT
TTCTAACCAATGAGATGGTAAAACGAATTCGTAAGATTGTTGTGGTGCAA
CTGAGGTACTGCTTATCCCTTGTCCGAAATAATTAATCTTCCTGTCCGAA
TTGCGCTTAATTGTTGTTTCTTCGGATTTCGTTTGAAAGTAGAGATCTAA
TGTATCTCCCATTGATAATTTAGCCAGGCAAATGAAATCCAAATCGTGAT
TGCAGCTTGTGGTATGACATGTTAATTCTAAGTGACAAAGTAGCTCTTCA
GAATTCTTCAGAATGCTAACGTGAAACGCCTTAGTACCAAGATTTTCAAT
GATTAacgctgacatcagcaaatatACTCCATCAGCATTCACTGATACTT
TACCAGAGCCAGACGCGAATTGGTCGGTAGGTACGTTCCATAGAGTTAAG
GAATTATATTGATCAATACCAGGAAGGACGACGTCTTGGTTGAGAAAAGC
ATACCATCCTTTGAAAGTCGAGAACGTCGGTGCGTAGATACACGAAATTG
TCGCCTCTAATAGAGTCACGTTTAATACGGACATTGGATTTATGAAAGTG
TCGTTTTCTGTTGCGTTGACTAGGTCGAGTACATATTGATTGAATAAAGT
TTGATATTTTGCGGTATCATAAATAGGTGTCACTTTGAACTCTACATTGT
CGTTCAGTTTGAATTCTTGCAACGTTTGGACCGATGTTGAAGTTGGCGAA
TCGCTGAAATAAAACG Run BLAST on NCBI transcript from alignment at sc0000563:124048..125096- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00026156 ID=TCONS_00026156|Name=TCONS_00026156|organism=Clytia hemisphaerica|type=transcript|length=1049bp|location=Sequence derived from alignment at sc0000563:124048..125096- (Clytia hemisphaerica)
CAATGCAGAACAAGCTTTGATTTCCAGCAACAAGTTTAGATGAAGACTGA
AAACCCCTGATTGCTCTACGATCAACTGATTCTTATATGTTGAAAATTGA
TCCATGAAAAGTTTAGGGAAAGTTGTGTTGTGGGTTGTCCAGCTCTTCAT
TTCTAACCAATGAGATGGTAAAACGAATTCGTAAGATTGTTGTGGTGCAA
CTGAGGTACTGCTTATCCCTTGTCCGAAATAATTAATCTTCCTGTCCGAA
TTGCGCTTAATTGTTGTTTCTTCGGATTTCGTTTGAAAGTAGAGATCTAA
TGTATCTCCCATTGATAATTTAGCCAGGCAAATGAAATCCAAATCGTGAT
TGCAGCTTGTGGTATGACATGTTAATTCTAAGTGACAAAGTAGCTCTTCA
GAATTCTTCAGAATGCTAACGTGAAACGCCTTAGTACCAAGATTTTCAAT
GATTAACGCTGACATCAGCAAATATACTCCATCAGCATTCACTGATACTT
TACCAGAGCCAGACGCGAATTGGTCGGTAGGTACGTTCCATAGAGTTAAG
GAATTATATTGATCAATACCAGGAAGGACGACGTCTTGGTTGAGAAAAGC
ATACCATCCTTTGAAAGTCGAGAACGTCGGTGCGTAGATACACGAAATTG
TCGCCTCTAATAGAGTCACGTTTAATACGGACATTGGATTTATGAAAGTG
TCGTTTTCTGTTGCGTTGACTAGGTCGAGTTNAGAATTGTATTGATCAAT
GTCAGGAAGGACGACGTCTTGGTTGAGAAAAGCATACCATCCTTTGAAAG
TCGAGAACGTCGGTGCGTAGATACACGAAATTGTTGCCTCCAATAAAGTC
ACGTTTAATCCGGACATTGGATTTACAAAAGTGTCGTTTTCTGTTGCGTT
GACTAGGTCGAGTACATATTGATTGAATAAAGTTTGATATTTTGCGGTAT
CATAAATAGGTGTCACTTTGAACTCTACATTGTCGTTCAGTTTGAATTCT
TGCAACGTTTGGACCGATGTTGAAGTTGGCGAATCGCTGAAATAAAACG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00026156-exon-sc0000563-1575043694:124374..125096 | TCONS_00026156-exon-sc0000563-1575043694:124374..125096 | Clytia hemisphaerica | exon |
| TCONS_00026156-exon-sc0000563-1575043694:124048..124190 | TCONS_00026156-exon-sc0000563-1575043694:124048..124190 | Clytia hemisphaerica | exon |
| TCONS_00026156-exon-sc0000563-1510915933:124374..125096 | TCONS_00026156-exon-sc0000563-1510915933:124374..125096 | Clytia hemisphaerica | exon |
| TCONS_00026156-exon-sc0000563-1510915933:124048..124190 | TCONS_00026156-exon-sc0000563-1510915933:124048..124190 | Clytia hemisphaerica | exon |
| TCONS_00026156-exon-sc0000563-1491911889:124374..125096 | TCONS_00026156-exon-sc0000563-1491911889:124374..125096 | Clytia hemisphaerica | exon |
| TCONS_00026156-exon-sc0000563-1491911889:124048..124190 | TCONS_00026156-exon-sc0000563-1491911889:124048..124190 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000563 | supercontig | sc0000563:124048..125096 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR008983 | Tumour_necrosis_fac-like_dom |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005515 | protein binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0005515 |
protein binding |
Blast
The following BLAST results are available for this feature:
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