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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00026140 ID=TCONS_00026140|Name=TCONS_00026140|organism=Clytia hemisphaerica|type=transcript|length=535bp
CGTTTCCAAACAGACGAAAGTCATGAACATCGTATTGCACTCATTGGTAA
TTATTGCaggattttattttttacaaaatgatCCGAATTCTCAAAAATCC
TCCACAAGCTTGATAATTCCAGGTGCACAAGCTTTTGCTCCTGCAGTCCC
GATCTTAGTTGGAGCTGGCGCTCGCTTAGCTGCTAGACAGATTGGCAAGC
ATGTAGCGAAGCGAGCGGCAAAACAAGCTATGATAATGGCAGCCAAAAAT
GGAGGCGCCGAGCATACAAAAGGTAAACGAAAATCAACCGAAGGAAAACA
CGAGAAAGGTCAAGCAAGGAAGAATAAAGATCAAGGAAGAGCTAATGGAA
AGAAACAGAAGGGAGCTAAAGATGGGAGTAAAAAAAGCAAGAAAGCGAAT
CGTAGAAGATAAACTGAGATATGGCCATCcaacaattaagcacaaaataC
AAGCCACTGTTGACTATTGTACATAATGTAAtgataaataaaatattgat
tTAACGCACCAATGCACATCAAATTTTAATCTAAT Run BLAST on NCBI transcript from alignment at sc0000563:13825..23234- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00026140 ID=TCONS_00026140|Name=TCONS_00026140|organism=Clytia hemisphaerica|type=transcript|length=9410bp|location=Sequence derived from alignment at sc0000563:13825..23234- (Clytia hemisphaerica)
CGTTTCCAAACAGACGAAAGTCATGAACATCGTATTGCACTCATTGGTAA
TTATTGCAGGATTTTATTTTTTACAAAATGATCCGAATTCTCAAAAATCC
TCCACAAGCTTGATAATTCCAGGTAAGTCCGTTTCTTTTTGTTATTTTTC
AAGGTCGACGATCTCAATTTTTTTCGGTATTTAAGAGTAAGTTGGTGCAG
ACCTTTTACTATAAGTTTTTAATCTTTAATCTTAATTACATAAATTCATT
TTTCTTTACCTCCATACGTTCTTTTATAAAAACAAAATATACAAGAACAT
ATAGACTGGGAATCCAGTCGTTTATAACGTTTTTGTTGAAAGCGGGAAAT
TTTTATGTCGGGATATGGTTAAAATAAACGACTGGGCTAAGGTGGTTTCC
GTAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNATGAGAATTTCTAAGTGAAAGAAAAAAAAACAAACCAAAACAAACCAA
CAAGACCCCCTGGAAATGTTTTCCAAAAACATGAAAAAAGAGAATTTTTA
TGAAAGGTTTTTTTGTGCACAAAATATTCTAGACGACTATATTGATGCTC
CTGTCAAGTTTTCTACTTCCTATTTTTTACTGAGTTAAGTCGTCTAGCAT
GCTAGACTAAAGAACATAAGGCTTTTGTGACCAAAGTATTAAGAACAAGT
TTAGAACAAAGCTTAAACTCAAAAAGTTAAGAACATTCGAAGGTTTAAAA
AAAAACTTGGATGTTCTTATAAAAAAAACATATAATGTCAACAATGACTG
TAATCGTATTTTTTCAGGGGCGAATGCAGAACCCATTGCACCGGCCATTC
CATTCATCGTAGGAGCTGGCGCTCGCTTCGCTATAAGACACTTCGCTAAA
CACATAGCAAGGCGAGCTGGAAGGCGAGGTGCCATATTGGCAGCGAAGAA
TGGCGGAGCAGAGCATACAAAGGGGAAAAGAAAGTCAACCAAAGGAAAAC
ATCAGAAAGGTCAAGTGAGGAAGAATAGAGATTGAAACAGAGCGCTCGAA
AAAAAACAAAAGGGTGGTAAAGATGGAAGTAGGAGATCAAACCGTCGAAT
GTTTGGAAAAAGACGCAGAATCAGACGAACAAAAATAAGACGCACGAAAA
GCAGACGCGCAAGGAGCAGACGCGCAAGGAGCCGACGCAGTCAAAAAGGC
AGGAGGAGCAGAATCAAGCAGGGCAGACGAAGTAGAAGTAGACGCACAAG
GAAGAGACGCAGCCGAACAGGCAGAAGAAATAGAAGAACAAATCGCCGAT
TGTCAGGGAGAGGAAACCGAAAAAACCGACGGAGTGGAAACCGAAGAAGC
GGTAGAGGCTGGTTTAAAAAACGATGAAATATTAAAATCCCAAAATGAGT
TTTTTTACTTTGTGTTATAAACTTCTGTTTTTTTAGGGTAGAGACTAGCT
TTTGATGTGAACAATGTTCGGGCTGACTAAGATATTTGAGGCATGTTTTT
AACCGTATTCTTTAAAGATCTCTGGCCCTTCGGAAGAGATAATAAAAAAA
ATATTAGCAATTTCAATCCGGTAATTTTATTTTGCTTTTTTAAATTTTGT
TGTAGTAAAGCATTTCTTAGGGGGTATTTTCTACAGAATGTATTTTTTGT
GAAAAATTGCATTTTTTTTCGAACGAAAAAATAAAAAAAACATATTATAC
TAGAAAAGTTCCACGTCTTTTATAAGGATGGTGATTTTCATTTCATCATG
GATATTCGGCATATACTAAAAGACGGATCGACGGATCAACGGATCGACGG
ATTACTAAAACACGAATCGTCGTACTTTAAATTACTAAAACACGGATCGT
CGTATTTCGGATTACTAAAAGACGGATCGTCGTATTTCGGATTACTAAAA
GACGGAACGTCGTATTTCGGATTACTAAATCACGGATCGTCCTCGTGTGA
AGAAATTCCTCGTGTGCTAGGTTCCTCCTTCTTCTTCTTAAAATTTTTGA
AAATAGTTGCAGTGACCTGGTAGTGTGAAATTGTCGATTGTTGAAGAAAA
TATGTAAGGCATACACTGACTATTTTCATCGTTTGCTACGTTTGCTGAAT
TTTCAATCTAATGTAGCAAGAATGGGCTCTTGGGTCAATGTTAGTTAAAT
ATATAGAAATCTTGTCATTGCTGTTGTTTTTCTCGATTTTGGACTTTGAT
GATGATTATATAACTTTCACGTTTTAAGCACGTTTACACACATCTCTTTT
CCTGTTATCTTTTTATTCTTTGACATAATGCAATAAAGTCCAATAAAAAA
AGAAGACTTTTTTAATCACATGGTAATTACAGCTTTAATTACATTCGATA
ATTTGGGAGTTGAATTATATCCATAATGCACAAATTTGACATTCTCAAAG
GTAAAAAGAGTATAAAATTTCTTGCTTTACGATTTTGTTGTTACTTCCTT
TGAATGTTATCTAATAAAGGACGAAATAAAATAAAACATATAGTTTTATC
CGGGGTGGGGGGGGCACCTAGGCAAAACGACCGACGGGTATGTGCGGACC
CGCAAATTTTTTTCCGTACATGGACGAGAGTATCTCATCTTGACGGTCGG
GAGTATCATCGACGGNAGGGGGGGGGCACCCAGGCAAAACGACCGACGGG
TATGTGCGGACCCGCAAATTTATTTCCGTACATTGACGGGAGTATCTCAT
CTTGACGGTCGGGAGTATCACATCTTGACGGTCAGGAGTATCATCGACGG
GCGGGAGTATCTTAAACTTATCTTAAACCTTGGAATATCGACCCGACCGG
GGTTCGAACCCACCAACTGAAAGAATTTCTTATCAGAAACCCAGCGCACT
ATCCGTTGAGCCACACTCGCACAGCAGAATACAAAATTTGGAAATACTTA
TAGAATGACAAAAAAGACGGGGGTAATGTTATTATGATATGGGTAAAATT
GCCCCTTTTTTTAACCTGACTGAAATTCGAGCCGTTACTAGCAACCCTGC
GGGGCCCAAGGCGCCGAGTATGCACCCGGCACAGTGACAAGCCGTTACTA
GCAACCCTGACCTGACCAAACAACAAAACCAAACAACAAAAATGAGATAT
TCCCGACCGTCGATGATACTCCTGTCCATGTACGGAAAAAAAATTTGCTG
CGGACCCTAAGGGTGTGTTTTTCGAAATAACCAAAATGCACTGTAAGGGT
GTGTTTTTTTCTCAATGCACTGTAAGGGTACAAATTTCAAGTTCTAATGG
TCGTTCAGATTGAATTCTACTGTTTCTACTTCAAAGTACATTTCAATTTT
TGATTTTTTTTTGCCTGCGGCGCAAATCTTTCTTTTCGGAAAATTCAAAA
GCTTATTTTTCTGTTAATATGCCAATCAAGAGAGTCATTTTGAGTCAAAT
TAGAAGGGTTTTAGCTAGTCTAAGAAGTTATATTTTATAAAATTTTTCTA
GTCGGACCCAACCATGGTGTCGATGGTGGGTCCTCCTGATTAATTCAAAT
GATATTGCACACTATTTCAGACTATAGCTTTCTATTTAAAAAAAAATACG
ACGATCTGTGTTTTATTAATCCGAAATACGACGATCCGTGCTTTAGTAAT
CCGAGATACGACGATCTGTGTTTTAGTAATTTAAAATACGGCGATCCGTC
TTTTAGTAATCCGAAATACCACGATCCGTGTTTTAGTAATCCGAAATACG
ACGATCCGTGTTTTAGTAATCCGTCGATCCGTTGATCCGTCGATCCGTCG
ATCCGTCTTTTAGTATATGCCTGGATATTCTCGTATTCTCAACTTTTTGG
GGAAAATCATCCTGAAATATCCTTACTGTATTCCTTAGGCTAGGATCCAA
ACACAGCATCAATCTAACATCTGATACATAGGGAATACATACATCAAGCT
AAGATTTGGTATATTTGTGAAACACTTTAGCAATACTGGTAAATTGCTCT
AAAGTTTGCGTTCTTGGTTTCAGTTGCCAAAATCTATGATGTCGATATTC
TTAACATATTGTTAATTTTTTGGCTAATTTCATCATGAATATCAAGCAGA
TATTCAATAGATAAAAGTTTGTTATTGAAAGCAAAATTTGTAAAAAGAAT
CTACCCTGGTATAATAGCCGTGGTGTATCAGAAATTATTCAATGACTGTT
TGTGCTTACAGCTATATGATATTCTTATATTATATAAAAGAAAAAGCGTT
AATGTTGTTAGTAATGATCAGAAAAAACTAGAGGTTTATCCTATACGTTG
CCGATAACAAATCCAATCAAAAGCTCTGGGGGAGGCTATTTAAATAAAAA
GGCCTCATTGAAAGGTAAATCTTTCGATATCCCATGACAAAATAACAATC
AAAACAACCATTATCATAATGACTTATAATAAATGAGAGTTTTAAGATTT
CATATGGAGCAATGTAAGGGTAGTGGAATTCACAAAATATGGAGGATTTC
CTACTTTTGGTTTCGCCTGGACTTCACTTGTAAAAGTATTTTTGACTGAT
ACAGCACATCGAAGCGTCGAATCAGTTGAAAGAGATATAAAGAGATATGT
CGGACCAAGGGAAATCATATGCATGTTTAGGCGTTTTCTATAATTACGAT
GAACAATTAAGGACAGTACTTTTAAGTATATGCTCTGAAAAAAACAGAAA
ATACCCAGGCGAAGAAGCGCCTTTTATCACTGGAAGCTTAAAAGAAGGGT
CTTTGTTAGTACCTTTGATGATAAAAGTCGAAAATAAAGATTATGATTTG
GATATGATGATGGTTTTTGAAAACCTCCCCGAGGATCGGTCACGTAATAT
GATGATGGAAACAGAATATCCTGGTTACTACCTCCTCAATGTTGACGATG
ACCAGACATCGAGAGATTTTGATGAAAAGTCAATTTCCTTCCTCAAAGGT
GAATGCTCAATCAAAGATGTTCGTAATAGTGGAAATAAATTTATAGATGT
TTTCGAGTTTAAAAAAGGGTGTCCCTCAGTAACTGGGCGTTTATCTGATA
ATGCCAGTGAATTACATCCAGACCAAGAAATCGACGAATCGGTTATCAAT
CATCCCTTGGTGCAAGTGGTGAGCCATATGATGGTGGATTTGGTATTGAG
CTTACAAATCAACTTCTGGCCAGAAATAACAGCAGAATGGTTCACAAGAG
ATCGATATTGGCCGGATCCACGGACTATATGTGAAATTCGTGAAGTGGGA
TGTTGTTTAGTTCGAAAGGCGATCGGAAGTGAAGAACGATCGTGGAGATT
ATCTTTTTCTGAAGCTGAAATTATCTTGGCAAGTAAGCAAACTTGTTTTC
AAAAGATGAGCTACTTATTGGCCAAGGTAATTTTCACTTTGGAAACCCAT
GCTCTTTTTGATGGAGAAAAAGATAAGAAATTATCTTCGTATCTCCTTAA
AACTGTTTATCTTTTCACAATAGAAGAAACACAACCAGAAGAATTTGAGA
AACTTGAACAATCTCGAGATTATTTAGAATTTGTATCAATGATGTTCGAA
AGGTTATCACAAGCCTTTAGAGCTGGTTATCTGCCATGTTATTTCTCAAA
GGAAATAAACCTATTACACGGCTTTGATAGAAATTTCCTAAATGACGTTG
CTTATCGATTCGATAATACTTTTCAGCTGGAACTTGACATTTTAATCAAA
AAACTTGTTCAGAATTTCAAGGAGAGCCGACTTTACAAGATTTTTTCGGC
AGAACCCATTCAGATAACACCCTGAACTATTTTAAAAATATTGTTTTTTG
TTTTTTTCATTACTATAATGTATGAAATGGGGATGATTTTGATAGCTCCT
GAATTGGACTTTTCCAGAAAATAACTGTTGAGGAGATCCATTTCCGCTCC
AAGGGGATAAGGATTGATATGTAGGGGAATTCCATAGGGATATACAAAAT
GTTGTCAAAAAATAACAGGAATTCCATGGGGGTAACTTTTAAAAATCTTA
CTAAAATTTAAAATTCTAGAGTTTTAAACTAAATTTGCCTGGAATTCCAT
GGGGTTACAGTATTTCCAGCAACAAAACTTTGGACCTCCTCAACAGGGGT
ATACATTTTTTCTTCGGATAAGCTCATTGAGCATTCAAAAGTNGACCTCC
TCAACAGGGGGTGTACAGTTTTTCTTCGGATAAGCTCATTGAGCATTCAA
AAATTTAGTTCACATAATCTAGCAGATACAATTTTCTGTAAAAGTAATAC
TATTTTTTCAGTATTTAAAGAATTACCTCTCAAATTAGAATTTTTAGGGC
AAAATAGACCATATTATGAACAAAAGATTCCCTCAACCGCTAAATTAAAT
TCAGCGAAACTTTTTTCTATTAAGTATATAAGCTTTTTTTTTTCATAAAA
ATATAATTTATAAGAATATTAGTTATGAAATTAGGCAAAAAATATGTCGT
TCTTTATTGTCGTTTTTTCGTTTTTTGTCGTAATTTGTCGTTTTTATTCG
TTGCTCGTTTTTTCTTCGTTATTTCATAGTGTCTTTATGGTGGTCTCATT
TTGGCACTTACACTCCCTCTAAACATGTCTATTTTCAACTTTTCAACTTT
TGAAGTTTTTCAAATAGTTTCAACCAACAATTTTACAAAATTAACTTCAA
CAATCAACACACACTTTTCACAGCTTTCAACTTTGGCTCACCTGGTAGGT
TCATGTTTGTTTTTGTGTGTCAGCCATTTTGTTTTGCTTTTTTAGGTGTG
TCTTAGGTTAAAGTTAGGAATTTCTCACTCATTTTTCTCATCATGTTTTG
ACTTAACTTTACTTTAGACTTAGATTTCCTTTCACAAATTCTATTTATTC
AGACTTAAATTCCTTTCATGTATTTTAATTTCAATTAGCCTTAAATTCAT
TTGTCAATTAAGACTTAGTCATTTTTTCATTTTTTTTTTTTCAATTATTT
GAACATAAGTTATTTTACATCTTCAGTTTGAACAATACCAATATCAATAT
CATCGATCCGTTACAAATTCGAGTTAACTTTACTCTGTGTGTACTACAAT
TCGTTTGTCAATTCTAGTTTGAATTTCCTTACGGACGGTGCATTACAACA
TTGGTTTCCAAACCGTTCCAAGTATCAATGCTTCTCCAGTAAAGTGAACT
CGTTTGGCATCCTCTAATGCCGTCTTCAGAAAAATTATTTTTTTAATTCG
AGATTGATTGTGCTTACGTTGAGGTCGATTTCGAATAACGAGTTTCTGAG
ATGCTTATATACTTCCATCATATCCCCGATTTTACGCCGGTCTTAAGACA
GAGTAGGTTCATGACTTATTGACGTTCTTCGTATGAATGGTTTCCATAAC
CACCGACAAGCCTTGTGGCCCTGCGTTGAACACTTTCAATTGCATTAGAG
TGTTTTATCAGCCGTGGAGACCAAACTGCTTGCGTGTACTCAAGGTGAGA
TCTCACAAATACAATGAAAAGTGTGCGAAGTATCTCGGGAGAAAGGAAGT
CGGAAGTCGAAGCTTCTGTTAATCAAACCAACGATTGATTAAGCCTTCTT
GATCTTGGTGTAGATGTGCTCTTCGAGATTTAATTCACTTTCGATGATCA
CTCCGAGACCCCTCTCTTGATCGACATTCGACATGTTCTAGGACAAAGTG
AAGTTATAGGTCATAGAAAGGCTTCCATTGGAGTTAAAGACCAGCAAAAA
ATGGGTGTTTTTTGACTCCAGCGAGCAGCCTATTTTTAGAGGCTGTAACC
TTCAATGGAAGAAATTCCAGAAGATTTTCCAGCCTCCTCGTTTATTCGAA
ACCCCCGTTTATTTGGAACCTAATAGTTCGTGTCATGCGTGAAGTATCAG
AATCTACTCAGAGAGTACTCTCTACCCTGGAAAAGAACATTAACTTAGAT
GTTTAAGTCTTGAAAAGCGCCTGAGCTCATGATGGTAGAAAGAATTTACC
TTTAAAAAAGTACTTTTCAAAATAGAATTCCCCTAATGAATATTAATTCC
GAAAAGCACATTTGGGGTGATGTGACATAATTTTATTGTCACATGATGCA
AGTCTTTAACCATGGTAACCTCATAACACTGTATTAAGGAATCCCCCCTT
TAAGAAAATTTATGCTGACTATTAAAAAGCTTTAGCATTCTATATAGTAA
ATCACAAATAGGTTTTGATTTAAATGAATGTTTATCATGCTTTAGCTTTT
AATAATTTAAATTTTGTGATGTTATAGTAACCCTCTATGTTTTGAAGAGA
ATCTTACTATACTAAAGACTGTTTGTTTTGTCAATTGGCAAATTCCCTAT
GGAAAGTATAGTACAGTTTCCAAAATAAATGTTCTTAGCTCGCCTATATA
TAAAGGATAAATATCTAGTGGTAGTTAAAGCTGAAAGCATCTACAAAGTT
AGTAGAAAGGTTAAAGAAGAATAAATTTGAAACAGGAGCAGTCATGAACG
TAATATTGTCGTTGTTAGTAGTTATCGCAGGATTTTATTTTTTCCAAGAT
GATCTGAATTCTCAAACATCCTCCACAAACTTGATAATTCCAGGTGAGGT
TGTGTTTCAAAGTCTAACGTTTTAAACCGTTCCATGGTAGCCCATGGAAC
TTTGTCGATGATTCTTACTTTTGGATACGTCCCTTCTTAACAGATCTTAC
ATCTTTCTAATTACAATAATATGAATTGCTACCTGAAGATTGATATCACC
AATGATGACGTAACCTAATTAATCATACCTTTTCCCCTCTCTTTTAGGTG
CACAAGCTTTTGCTCCTGCAGTCCCGATCTTAGTTGGAGCTGGCGCTCGC
TTAGCTGCTAGACAGATTGGCAAGCATGTAGCGAAGCGAGCGGCAAAACA
AGCTATGATAATGGCAGCCAAAAATGGAGGCGCCGAGCATACAAAAGGTA
AACGAAAATCAACCGAAGGAAAACACGAGAAAGGTCAAGCAAGGAAGAAT
AAAGATCAAGGAAGAGCTAATGGAAAGAAACAGAAGGGAGCTAAAGATGG
GAGTAAAAAAAGCAAGAAAGCGAATCGTAGAAGATAAACTGAGATATGGC
CATCCAACAATTAAGCACAAAATACAAGCCACTGTTGACTATTGTACATA
ATGTAATGATAAATAAAATATTGATTTAACGCACCAATGCACATCAAATT
TTAATCTAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00026140-exon-sc0000563-1575043694:23113..23234 | TCONS_00026140-exon-sc0000563-1575043694:23113..23234 | Clytia hemisphaerica | exon |
| TCONS_00026140-exon-sc0000563-1575043694:13825..14237 | TCONS_00026140-exon-sc0000563-1575043694:13825..14237 | Clytia hemisphaerica | exon |
| TCONS_00026140-exon-sc0000563-1510915933:23113..23234 | TCONS_00026140-exon-sc0000563-1510915933:23113..23234 | Clytia hemisphaerica | exon |
| TCONS_00026140-exon-sc0000563-1510915933:13825..14237 | TCONS_00026140-exon-sc0000563-1510915933:13825..14237 | Clytia hemisphaerica | exon |
| TCONS_00026140-exon-sc0000563-1491911889:23113..23234 | TCONS_00026140-exon-sc0000563-1491911889:23113..23234 | Clytia hemisphaerica | exon |
| TCONS_00026140-exon-sc0000563-1491911889:13825..14237 | TCONS_00026140-exon-sc0000563-1491911889:13825..14237 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000563 | supercontig | sc0000563:13825..23234 - |
Blast
The following BLAST results are available for this feature:
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