TCONS_00026137 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00026137
Unique Name	TCONS_00026137
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1522

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at sc0000563:173869..178852+

transcript sequence

>TCONS_00026137 ID=TCONS_00026137|Name=TCONS_00026137|organism=Clytia hemisphaerica|type=transcript|length=1522bp
GNTTTATGTTGGACACACAGATTACCAATACTTACGCTGGCAGGTTGTTG
ATACACCTGGAATCTTGGATCATGCTTTGGAAGAGCGTAACACAATTGAA
ATGCAGGCTATCACAGCTTTGGCACATCTACGTGCAGCTGTTCTTTATGT
CATGGATATCAGTGAGCAGTGCAATAAATCGTTAGCTGAACAGATTGAAC
TTTACAACAGCATCAAACCTTTGTTTACTAACAAACCAATCATCATATGT
TTGAATAAAGTGGATATCATGAAAATGGAAGAACTCTCCGAtgagaaaaa
agaattatttaaacAATTTGAGGAAGATGgTGTTCCAATCATCCCAATGA
GTAATCTATCAGAAGAAGGTGTGATGAAAGTCAAATCGGAAGCTTGTGAT
CGACTCCTCGCTCAACGCGTGGAAGTGAAATTGAAAAATGCTAAGAAAAT
GGATGAAGTTGTCAACCGACTTCATATTGCTATGCCTAAACCTCGTGATG
ATAAAGAACGACCTCCATTCATCCCTGAAGCagttaaaaagaaaaTGAAT
AGCATGCAAGTGGACAGCTCCGACCGCAAACTACAGAAACATTTGGAGCA
AGAGCTCTTGGAAGAGTACAAGTTTGATGACAAAGCCTTATACTTTGTCA
AAGATGATGAAAAATATGATATCATTCCTGAGATTATCAATGGAAAGAAT
ATTGCAGATTATATCGATGAGGATATCTTCGAGAAACTGGAGCAACTGGA
AAAAGAGGAGGAGCTGAAAGAAGCAGCTGGCGTCTATGATTCAGATGAGG
AAGAAGAGAATTCAGAAGACGAGGAAATCAGGAAAACAGCTGAACTGATt
cgtaaagaaaagaaaattcgtTTACAAGAACATCGACTGAAGAAAGGACA
AGCAAGCAACGGTCCTGTCTTGCCAAGAAAAGCTTCTATTCGGTTGGAGA
ACTTCGGGCGATCGCGTAAACGAAAGAGCGAAGAAGCAATGGAACTAGAC
GGAGATGTCGAAATGAATAGCGACGGAGAGTCTAAGCCTCGATCTCGATC
AGCCGTcaagaaaattgtcaaaaaacgaAAGTTGGAAAAGAGCGAAGCAA
GGAGTCAATCGGCCGCTGCTCACCGTTCCAAGAGCTTAAACACGCCGCGC
GACAAGAGCGGTATCAAGAATCCCGAAGATCGCGAGAAAGCAAAAAAGAA
GGCAAGATTGAGTCAACGAAAAATGAATTACATGGGGAAAGCTGGCGAAT
CGGACCGTCACATTCACGAAAAAATGCCCAAACATTTGTTCTCTGGAAAG
CGAAAACAAGGGAAAACTGACCGTCGTTAAAttgtttttcatgattttat
atatgacaaatttttattattttgggtGTGTCGTGGTAAAGAAAATTATT
GAGCCAAAAACagagtcttctttttttaatcttcCGAACCTTTACAACAT
ACTCCAGGAAATATTATTCTCCgctttttcgcaaaaattaataTCGTAAA
ATCTCATGAGAGAATTTAAAAA

Run BLAST on NCBI

transcript from alignment at sc0000563:173869..178852+

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00026137 ID=TCONS_00026137|Name=TCONS_00026137|organism=Clytia hemisphaerica|type=transcript|length=4984bp|location=Sequence derived from alignment at sc0000563:173869..178852+ (Clytia hemisphaerica)
GNTTTATGTTGGACACACAGATTACCAATACTTACGCTGGCAGGTATGTA
TTACATTTCTTAAAAATGGCTATTTGAAAGTTCAATGTTTCGTTTTAATG
AGTTCACCTGGTTACTGCATTTGCTACTGGTAGTAGTTTGATGTTTAGTT
AAGAAAATGGACCCATAGACTATGTATAGAAACACAAAATACTTTACAAT
TTCAATTAAACCACTATACCTTGAACATTAGGTTGTTGATACACCTGGAA
TCTTGGATCATGCTTTGGAAGAGCGTAACACAATTGAAATGCAGGTACCA
CTTTTTGTCATCCTCATGCATCCAAGCTCTAACATAACACTTTCAGAACT
GCTTGCTCTATTTACAGATTTTGTGCTTCAAATTAAGTTCTTGTTAGACA
TATTTAGGTCTTACACAAATTGAAGACTGTTGTTAGTTTGTCTTTTTAAT
TAAGTTGCAATCGGATATTTACTTTCTTAGGCTATCACAGCTTTGGCACA
TCTACGTGCAGCTGTTCTTTATGTCATGGATATCAGTGAGCAGTGCAATA
AATCGTTAGCTGAACAGATTGAACTTTACAACAGCATCAAACCTTTGTTT
ACTAACAAACCAATCATCATATGTTTGAATAAAGTGGATATCATGAAAAT
GGAAGAACTCTCCGAtgagaaaaaagaattatttaaacAATTTGAGGAAG
ATGGTATGCAGTCATCCTGCctccttttttaattttttatatgaTATGTT
TTAATTCATTCCCAACCTAATTTCCTTCTCCCTACTCTTTTCAAACGGCC
CATGCAAAGGTTTATAAACTTCACGCCTGGCTGAGTCTTTTTTTTAAGCG
ATATGTAAAATCATACCCAGTAACATAACACATGCAACACAAGGCTCAGT
AAAATCTTAAACCTTTTTTGACTATTAGGTTGACTTAGATTTTTAGACTC
CGATTGATCGAATtattatcttttattttttcttaaaggTGTTCCAATCA
TCCCAATGAGTAATCTATCAGAAGAAGGTGTGATGAAAGTCAAATCGGAA
GCTTGTGATCGACTCCTCGCTCAACGCGTGGAAGTGAAATTGAAAAATGC
TAAGAAAATGGATGAAGTTGTCAACCGACTTCATATTGCTATGCCTAAAC
CTCGTGATGATAAAGAACGACCTCCATTCATCCCTGAAGCagttaaaaag
aaaagtaagTCTTGTATTAATCAGCAAGTTCCTTTTTGCGTCTTTTCTCT
GTTTTGTGATATATTGTATTGTAATGTACATAAATACTAGGTTTTCTTTG
GGAAATATTTGTACAAATCAAGTTCTTAGAAAATTACGCACACCAAAAAC
AAAGTGTAATTTGTATAACCTTTCTCATTTTCAGTGAATAGCATGCAAGT
GGACAGCTCCGACCGCAAACTACAGAAACATTTGGAGCAAGAGCTCTTGG
AAGAGTACAAGTTTGATGACAAAGCCTTATACTTTGTCAAAGATGATGAA
AAATATGATATCATTCCTGAGATTATCAATGGAAAGAATATTGCAGATTA
TATCGATGAGGATATCTTCGAGAAACTGGAGCAACTGGAAAAAGAGGAGG
AGCTGAAAGAAGCAGCTGGCGTCTATGATTCAGATGAGGTTTGTATGTCT
TGAATGATTAGGTGGTATGTGTGAGGTCTGCGGACAAGTTTCTTAGACTC
TTAGAGACAAAGTTGGTCTCTAAAATGATACATGAATTTTGaagattatt
tttatttgataactgatgatggcgttagccgaaaagctttttatcttgaa
atatcACTATAACATGGTGATATCTCACTCAAGTTATGTTGAAGGTCTAT
TCGCAAAACTCTTATTCGAATATTGTTGTCCAATTGATGAGGAATCACTG
GGATCTCCTCATCGCTGAAGAAGAAACCTTACAATTACAATTTCATTTTC
GTTGTTTAGGAAGAAGAGAATTCAGAAGACGAGGAAATCAGGAAAACAGC
TGAACTGTAAGAAAATGTTTGTATGACAACTTAAAACTCTGCTTTTGAAT
TCTAACAACCCAGACTACTAGGTTAAAATGAAATGACAGGTGTGCCCGAA
CAGACGGACCCTTAAAAGACACAAAAccttttagattttcttttacattt
tggtcgattttagtcaaattttggGAAATGTGACCCTCTTAGAGAGAAAT
TGATTTTATAGTCTTCAGAGAGCCTCTCGAGTTTTGATAAAGGAACCCAT
ACCACTTTCATATACCCAGTTTGCTTGCGCTGACGTAATTTAATTGTATT
GCTTTTTCAGTAATGGTAGTGGTACGTAAGATATGAAAAGTTGATTAAAA
TTATTAGTTCAATTTGTAGCTCTCTTTTGGATAACTTCTTTTACCAGGAT
tcgtaaagaaaagaaaattcgtTTACAAGAACATCGACTGAAGAAAGGAC
AAGCAAGCAACGGTCCTGTCTTGCCAAGAAAAGCTTCTATTCGGGTACGT
TTTAAAATTTGTGAACATATTTGGGGTTGTTTGTTGACTATCCTAGAAAT
CTGCTGTATAAATCATTGCAGGATCTTTTCTGTCCCCCTGTCGCTTTGAG
TCTTTTTCCTCGGTTTTACGGGTCAGAATTACGGGTTGCTTCAAACCGTT
TCAGTCACTCCACCGGCCTCATAATTGCAAATACACAAACTGGCTTCAGg
tatctttatcaaatttagttGACGATAGCGCATGACATTATAACGGAAAA
ATCttggaactcgtaaaatatttatCGTATTTTAACTATTTATCGTATTT
TAACTATTATTTATTCTCGATATTCATAATATTTTAGTTGGAGAACTTCG
GGCGATCGCGTAAACGAAAGAGCGAAGAAGCAATGGAACTAGACGGAGAT
GTCGAAATGGTATGCAAGATAGTTCTCTATCTCTATGAATAACATTGAAA
GTCCTAATCCGTCCTATGCAATAataatctttctgtaattcgaactaaaa
catttgTCCCCTTAGCCTTGAGATTCATACAAAATtctgagatgccttgg
agtttttacaagatcttctctaattggtcatttaaagtgatggagatgac
gcgttctttagaaaaagtaataagattcttttattacatcttaacgacca
accaaatcaaataagagcttgtaaaaactccatctcgtcccgaaATTCTC
TCCATGAtccaaatctttctataattcgaagaaaattcttggccccttga
aaatccttggccccttgaaaatcgaattaacaAGAGTCAACTGCATTGGT
CTAGGATATTAAAAGTTCCAGGAAGCGCTTAAGCTAAGGGTCAATTTTAG
TTAGCTCGTTGAGCCCAAAACATCAAAACACCAGCTCTCGGCTAATTGAC
TAGCTAGCTAAGACTGTAGCTTccaattcaaattcaaacaaaTATCCAAA
TTGACCGGCTGTAAATAGACACAACATTACGCAACTTACTTacgggctct
gaccatagtcgaaagattgattttagtatttgaacattaaagggacatta
aagtagtaaaatgtaaacattgcgcgaaccacgtgtcattaaagagaaca
attgaCTGTTTATCTATGAAAAATGGGTGAAAAAGCActcttttcaagat
tttgagttctatttttagttcggtaaaagaaatcttttcaaaatcgcCGA
AAAttagctcttcaaagttgaaatacccTTCTTTGCagtattcattttct
tctttatcaatttttttttcatttcgattCATAAATTTCCAGACTTAagg
atagttggcctaacagaaaatgtataacatgccaaaGTTTTGTTAGCTAA
TGCAGGCTGAAATTTGTATTTTGtcgtggcaaatattaaaaaatcactat
ggtcagagccctaaAGTGACCTTTGACTTTAATTTTCTCCTTCTACCATT
TTAGAATAGCGACGGAGAGTCTAAGCCTCGATCTCGATCAGCCGTcaaga
aaattgtcaaaaaacgaAAGTTGGAAAAGAGCGAAGCAAGGAGTCAATCG
GCCGCTGCTCACCGTTCCAAGAGCTTAAACACGCCGCGCGACAAGAGCGG
TATCAAGAATCCCGAAGATCGCGAGAAAGCAAAAAAGAAGGCAAGATTGA
GTCAACGAAAAATGAATTACATGGGGAAAGCTGGTAAGTTTTCTTCCTGT
AGAATGAGAGGAAGATATTCTGCTTACtatcgggtacctaatagccgtcc
cccccccgttaattaatttttcgaaaattttccacccaggacaatCTTAT
TCCAACCTCcctcccgcttattaatttttgggaaaatgtttttgaaagtt
cccatttttgtcttaattctgctgtattagcctccttttcaaacattttc
cacccaggacatttttattccaacctNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNCAGGACctttttattccacccccccccccccc
cgcttattaaattttgagattttttccaaccccccggctattaggtaccc
gagagtatgtaaACTCGTTCCTTCTCAGAAATGGTAGAAACAAAGCTTGT
ATTTAGGCAGGCAGCTTTTAAGCAGGGAACTTGCTTGAATTAAATGACCA
TTGTGAGCACTGCACACGTCTCAAATCTAACCCTTACTATTGACCATTTC
TTTCAGGCGAATCGGACCGTCACATTCACGAAAAAATGCCCAAACATTTG
TTCTCTGGAAAGCGAAAACAAGGGAAAACTGACCGTCGTTAAAttgtttt
tcatgattttatatatgacaaatttttattattttgggtGTGTCGTGGTA
AAGAAAATTATTGAGCCAAAAACagagtcttctttttttaatcttcCGAA
CCTTTACAACATACTCCAGGAAATATTATTCTCCgctttttcgcaaaaat
taataTCGTAAAATCTCATGAGAGAATTTAAAAA

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_014693	XLOC_014693	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000563	supercontig	sc0000563:173869..178852 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
33.5783	25.9237	8.12758	9.25298	9.33028	21.1842	0	28.662	8.44185e-07	0	60.3729	100.134	117.714	174.268	72.9966	26.4653	86.3439	0	61.4024	0	47.0316	30.8894	67.7079	39.4286	85.322	57.862	38.8546	58.8972	34.5522	31.0299

Blast

[Close]

BLAST of TCONS_00026137 vs. Swiss-Prot (Human)
Match: NOG1 (Nucleolar GTP-binding protein 1 OS=Homo sapiens GN=GTPBP4 PE=1 SV=3)

HSP 1 Score: 356.681 bits (914), Expect = 7.970e-115
Identity = 220/442 (49.77%), Postives = 301/442 (68.10%), Query Frame = 2

Query:    5 YVGHTDYQYLRWQVVDTPGILDHALEERNTIEMQAITALAHLRAAVLYVMDISEQCNKSLAEQIELYNSIKPLFTNKPIIICLNKVDIMKMEELSDEKKELFKQFEEDGVPIIPMSNLSEEGVMKVKSEACDRLLAQRVEVKLKNAKKMDEVVNRLHIAMPKPRDDKERPPFIPEAVKKKMNSMQVDSSDRXXXXXXXXXXXXXYKFDDKALY-FVKDDEKYDIIPEIINGKNIADYIDEDIFXXXXXXXXXXXXXXAAGVYXXXXXXXXXXXXXIRKTAELIRKEKKIRLQEHRLKKGQASNGPVLPRKASIRLENFGRSRKRKSEEAMELDGDVEMNSDGESKPXXXXXXXXXXXXXXXXXXXARSQSAAAHRSKSLNTPRDKSGIKNPEDREKAKKKARLSQRKMNYMGKAGESDRHIHEKMPKHLFSGKRKQGKTDRR 1327
            +VGH DY+YLRWQVVDTPGILDH LE+RNTIEMQAITALAHLRAAVLYVMD+SEQC   L EQ+EL+ +I+PLF NKP+I+  NK D+ ++ ELS++ +++F   + +G P+I  S L+EEGV+KVK+EACDRLLA RVE K+K   K++EV+NRLH+A+P  RDDKERPPFIPE V  +   M+ + S +K ++ LE E+ ++Y  D +  +  +   EK+D IPEI  G NIADYID  I +KLE+LEKEEEL+ AAG YDS  E E+ E  EIR+ A+ IR++KK+++ E + K  Q   GP +PR A    +   R+   K   ++ +D D     D +    +  A +     RK ++ ++   S+ A       TPRD SG+++ +  +KAK   + +Q+KMN +GK GE+DRH+ +  PKHL SGKRK GK DRR
Sbjct:  206 FVGHMDYKYLRWQVVDTPGILDHPLEDRNTIEMQAITALAHLRAAVLYVMDLSEQCGHGLREQLELFQNIRPLFINKPLIVVANKCDVKRIAELSEDDQKIFTDLQSEGFPVIETSTLTEEGVIKVKTEACDRLLAHRVETKMK-GNKVNEVLNRLHLAIPTRRDDKERPPFIPEGVVARRKRMETEESRKKRERDLELEMGDDYILDLQKYWDLMNLSEKHDKIPEIWEGHNIADYIDPAIMKKLEELEKEEELRTAAGEYDSVSESEDEEMLEIRQLAKQIREKKKLKILESKEKNTQ---GPRMPRTA----KKVQRTVLEKEMRSLGVDMD-----DKDDAHYAVQARRSRSITRKRKREDSAPPSSVARSGSCSRTPRDVSGLRDVKMVKKAKTMMKNAQKKMNRLGKKGEADRHVFDMKPKHLLSGKRKAGKKDRR 634

The following BLAST results are available for this feature:

BLAST of TCONS_00026137 vs. Swiss-Prot (Human)

BLAST of TCONS_00026137 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
NOG1	7.970e-115	49.77	Nucleolar GTP-binding protein 1 OS=Homo sapiens GN...	[more]

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TCONS_00026137 (transcript) - C. hemisphaerica