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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00026134 ID=TCONS_00026134|Name=TCONS_00026134|organism=Clytia hemisphaerica|type=transcript|length=2863bpRun BLAST on NCBI protein sequence of TCONS_00026134-protein >TCONS_00026134-protein ID=TCONS_00026134-protein|Name=TCONS_00026134-protein|organism=Clytia hemisphaerica|type=polypeptide|length=646bp MAQYNFKKIQVIPTSKDFIDIVLSKTQRKTPTVIHKQYQITRIRSFYLKKRun BLAST on NCBI transcript from alignment at sc0000563:164930..178852+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00026134 ID=TCONS_00026134|Name=TCONS_00026134|organism=Clytia hemisphaerica|type=transcript|length=13923bp|location=Sequence derived from alignment at sc0000563:164930..178852+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000563:164930..178852+ >TCONS_00026134 ID=TCONS_00026134|Name=TCONS_00026134|organism=Clytia hemisphaerica|type=CDS|length=27174bp|location=Sequence derived from alignment at sc0000563:164930..178852+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00026134 vs. Swiss-Prot (Human)
Match: NOG1 (Nucleolar GTP-binding protein 1 OS=Homo sapiens GN=GTPBP4 PE=1 SV=3) HSP 1 Score: 733.791 bits (1893), Expect = 0.000e+0 Identity = 387/647 (59.81%), Postives = 496/647 (76.66%), Query Frame = 2
Query: 731 MAQYNFKKIQVIPTSKDFIDIVLSKTQRKTPTVIHKQYQITRIRSFYLKKIKYTQQNYHDKLTQIITDFPRMEDIHPFYADLMNVLYDKDHYKLALGQINTARHLIDNVAKDYARLMKYGDSMYRCKQLKKAALGRMCTIMRRQNQSLQYLEQVRQHLSRLPSIDPNTRTLLLTGFPNVGKSSFMNKVTRADVEVQPYAFTTKSLYVGHTDYQYLRWQVVDTPGILDHALEERNTIEMQAITALAHLRAAVLYVMDISEQCNKSLAEQIELYNSIKPLFTNKPIIICLNKVDIMKMEELSDEKKELFKQFEEDGVPIIPMSNLSEEGVMKVKSEACDRLLAQRVEVKLKNAKKMDEVVNRLHIAMPKPRDDKERPPFIPEAVKKKMNSMQVDSSDRXXXXXXXXXXXXXYKFDDKALY-FVKDDEKYDIIPEIINGKNIADYIDEDIFXXXXXXXXXXXXXXAAGVYXXXXXXXXXXXXXIRKTAELIRKEKKIRLQEHRLKKGQASNGPVLPRKASIRLENFGRSRKRKSEEAMELDGDVEMNSDGESKPXXXXXXXXXXXXXXXXXXXARSQSAAAHRSKSLNTPRDKSGIKNPEDREKAKKKARLSQRKMNYMGKAGESDRHIHEKMPKHLFSGKRKQGKTDRR 2668
MA YNFKKI V+P++KDFID+ LSKTQRKTPTVIHK YQI RIR FY++K+K+TQQNYHD+L+QI+TDFP+++DIHPFYADLMN+LYDKDHYKLALGQIN A++L+DNVAKDY RLMKYGDS+YRCKQLK+AALGRMCT+++RQ QSL+YLEQVRQHLSRLP+IDPNTRTLLL G+PNVGKSSF+NKVTRADV+VQPYAFTTKSL+VGH DY+YLRWQVVDTPGILDH LE+RNTIEMQAITALAHLRAAVLYVMD+SEQC L EQ+EL+ +I+PLF NKP+I+ NK D+ ++ ELS++ +++F + +G P+I S L+EEGV+KVK+EACDRLLA RVE K+K K++EV+NRLH+A+P RDDKERPPFIPE V + M+ + S +K ++ LE E+ ++Y D + + + EK+D IPEI G NIADYID I +KLE+LEKEEEL+ AAG YDS E E+ E EIR+ A+ IR++KK+++ E + K Q GP +PR A + R+ K ++ +D D D + + A + RK ++ ++ S+ A TPRD SG+++ + +KAK + +Q+KMN +GK GE+DRH+ + PKHL SGKRK GK DRR
Sbjct: 1 MAHYNFKKITVVPSAKDFIDLTLSKTQRKTPTVIHKHYQIHRIRHFYMRKVKFTQQNYHDRLSQILTDFPKLDDIHPFYADLMNILYDKDHYKLALGQINIAKNLVDNVAKDYVRLMKYGDSLYRCKQLKRAALGRMCTVIKRQKQSLEYLEQVRQHLSRLPTIDPNTRTLLLCGYPNVGKSSFINKVTRADVDVQPYAFTTKSLFVGHMDYKYLRWQVVDTPGILDHPLEDRNTIEMQAITALAHLRAAVLYVMDLSEQCGHGLREQLELFQNIRPLFINKPLIVVANKCDVKRIAELSEDDQKIFTDLQSEGFPVIETSTLTEEGVIKVKTEACDRLLAHRVETKMK-GNKVNEVLNRLHLAIPTRRDDKERPPFIPEGVVARRKRMETEESRKKRERDLELEMGDDYILDLQKYWDLMNLSEKHDKIPEIWEGHNIADYIDPAIMKKLEELEKEEELRTAAGEYDSVSESEDEEMLEIRQLAKQIREKKKLKILESKEKNTQ---GPRMPRTA----KKVQRTVLEKEMRSLGVDMD-----DKDDAHYAVQARRSRSITRKRKREDSAPPSSVARSGSCSRTPRDVSGLRDVKMVKKAKTMMKNAQKKMNRLGKKGEADRHVFDMKPKHLLSGKRKAGKKDRR 634 The following BLAST results are available for this feature:
BLAST of TCONS_00026134 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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