TCONS_00026131 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00026131
Unique Name	TCONS_00026131
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	3632

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at sc0000563:138961..153013+

transcript sequence

>TCONS_00026131 ID=TCONS_00026131|Name=TCONS_00026131|organism=Clytia hemisphaerica|type=transcript|length=3632bp
CAGATTTGATTGACAACCCTGAGATGTGAAGACGAAAACATGTGTTTTTG
CGGGTCTGTAAAGTGTTTAAATAATCAATGCTCCACTGGCGAACACAAAC
ACACACACTTGATCGAAAAATTTGGAAGGAGTTCTAGTAATTTTGGAAAA
CAAACCTTCATTTTTAACTGACAAAGATGCATTTCATTTCACTTTGTTCA
ATCCTGATAGCTGTTTTCCCAATGGTGAAAAACCAGCAGTCTCGTCATTC
TTGCAAGAAAGTTGACCCAACTAATGCTGAATGTCTACAAGACATCAATA
AATGTTCCAACGTTACTTGTGAAGAAGATGATAATCACTGTATGACTGTT
TACAAACTTGAGAAAGGTCGCTTTGTACCCTTCTTCGGTGGATGTTTTGG
AACACCTCACGACCAGTCAACTACTTCCCATAACAAGTGTGTATTGTATC
AAAGAAACCCTCACTACCCTACCCACTATGATTGCTTTTGCTCAGGTTCC
TTTTGCAATGCAAATATCATTTTTCCGCAGATCAAGTCTACCACAGAACA
ACCAGTGAGAAACACGACAAAAGCACTTTCCAGTTTGCAGCCCACTCAAC
GTACCGACTCTTCCGAGAAACTATATCTTTATTATATCCCGGCATCGATC
TTCCTAATGACTATGGTTCTTGGTGTTGCTCTATTCTTTTGGATAAAACG
AAAACGCCGTCGCCGGAATAGCCATGAAACCCTGCTGACAGAATTTAACA
CGACCATGACGCAACCGAAAACCTATCCAGCGTCTTTTCTCGAGATCATT
CACCAAGGACAAATGAACACTATCTGGAAAGCTACTTTTTGTCAGCGAGC
GGCTGCCATCAAAATTGTTAATAAGCTTGACGTGACCCAATGGGTCAAcg
agaaagatatttttctcaatCATAAACTTAAACATGATAATGTTGTAAAT
TTTATATCAGCCGAGAGACGTTTTAAAGAGACGACTGTCCAATACTGGAT
CGTTACTGAGTACCACGAAAAAGGTTCATTAGCGAACTACTtattgaaga
atattttatccAAAGAAACATTCTTGAGAATGCTATATAGTACAGTTAAA
GGACTTGTATATTTACATTCGAATAGTAAAATGAAGCCCATGGTAGCTCA
CAGAGACTTGAAACCAGCAAATGTTTTGGTGAAGGCCGATTTATCGTGTT
GTATATGTGATCTTGGTCTCGCTTTACCTCTGCCTGAAAATATTGACGTC
TCCAGAGAACTCTGTCAAGCTGGAACAAAGCGTTATATGGCGCCAGAAAT
TTTACAAGGAGCAGTCACATTTTATCAAGAATCCTTCTTGAGGGCGGATA
TGTATTCGATGGGTCTTCTATTCTGGGATTTGCTCTCTCGCACCAAGATA
GATGAATCTATAGTTGAGGAATACAAACCGCCGTATTCAGGACTGGTGAA
TTTCAATCCGAGTGTAGATGAAATGTTGAAATGTGTTGTTGAAAATCACA
AGCGACCTCATATCCCAAACCATTGGAAGGAAACACAGTCCTTTGTGACG
ATCGTTGAAACAATGGAACTGTGTTGGGACGACGATGCTGACGCTCGTCT
GACGTCACAATGTGTCGCTCAACGAATCAGAAGACTTATTCATTCACCGC
CCGATAACACATTCCAATCGCACGCCCTTGAGCAGCTCAAAGAGGGTGAG
AAGGAGAACTCGCAGAGTAGTAGTATTAGTTCAAATTCAGCACTTTTGTG
GGATAATTCGTCTACGAGGAAAGACTGTACATCCAACAAAAGCATAGGTA
GCTATTCAACGACAGACGACCATAGTCAATATTCCTTATCATCTTCCTCC
AATACTGTACTAACGAAATGTAACGCTTGAATTGAGCGTGGCGCACGTGT
ATAAGTCGCTTGATTTGTCCTGTTAAATAAATATCGAAGTGGGTTCAATT
TCCTGCTGACTTGctctcaaaatctaagtttcggAAAATATACTCTCTTC
TCAAGAAACTAACAGCATCGGgtgtcgttttcaaaatattattgttCGAC
ATTGTACTCATTGTTTGAAAGCGTTTACGTTTTTATTTCTCAATCAATAT
GATATTCTATGAGCTGATTTTAAAAACGAGGCCCTTAACGCTTTTTTGCA
TCTCTTTGAGAACCGGATGTGTTGACCATACACTTATCTTGCAAAGAGTT
TGTGAAAATTCTGgataattattcaaaaaactAGCGTGGCGATTTACATG
ACAAATTTGTACATTCTATTATATACTATATACTATTACATTATACTTTA
TATACTACTGTATACTATACTTATATAACATATATGAAATCGTATTTATT
CACCGTACATTAGTACTTCGGGCATGCTCAGTACGCATCTCATAGGTTTA
AGTAACAGGACGAACAAATTTCTCAATTACAAAAATATCTAGAAAGAGGA
AGGCTATTTTTTACGTCGGGTGTGAAAAGAGCATGTCTGAAGCCTTTATT
TTCAGTTATTTAGAAATCCTATGAAAGCATTTCTTTGCTACTACGATAGT
ACACACACTAgaacaaattttggttaaaacacgcttattttagctttttg
taATTTGATCCGTCCGTTTTTAGTtggaaagtaaatttttttcgtgatat
ccatgacgtaatgttttatacggaaacactaAAGAAAACGGGGGTTTGTg
ccactagttttattgttCATAAATTCAAAACTAGTGGCAAAACACGTGCA
TCTTTTTAGTGTTTCCGTATGAAAGTACCATCATGgttttcaaagttcaa
agaAATGCTTTCAAACATCATGTAAATATGATTTTTAGTTTAGTTACTAC
TCGAATCTTTTTCACGATTCTCAGGTTAATCAATTCGTTCGTTGTGGTGA
CAGGATCCACTTTGAAATTGTTAGGGCCATGATATGCCGACTAAAGTGGC
GCCGACGGGCAAAAGGATCTTTTTTAAGGGATGAATACGGAATTTGGTAC
TAATGTTAGTTAATGTTAATGTAATGACAATGAAACCTTTCTTATTGTTG
AATTTTGAATAGAGGAAAATGCagaggtttttttttaaatcttgctttTC
ACAATAACAGCCAAAATCAATATTCTCAAACACTATTCTTGTGATAATGA
GTACTTTTTGTCACCACACCACGGCAACGACAAAGATTGATAACTCGTTA
TTCATGGTATTCAAGGCGttatcttttatacggaagaaCCCAAAACACTA
AGCGTTTGCCACCAGTTCCAATTTCCAGACTCATCCAAGATTCATCTTTT
CAAAAGATGTCAGCAAACGCAAAGTCGTCTTTGGGTCTCCCGTATGAAAT
ATTACGCCATGAATTATAGACTTGCAATGTACATATTCATTATACAAAAg
tgtatttttatgtttttatattttacccCCTCATTATATACATACACATA
TTAATTATTGTTATATATCAGCATGGTTTAGAGAACCGTATTATCCAAAT
ATATCCCATATATAGGTTCGGTTACATCGTGCAATTAGTTTTACGTCTAT
CCTCCATCTGAAAAATAACTTGACATTGACCAAGATGATAACGCTCCGCG
TAGCATACGTCATAATCATAGATTtattaaag

Run BLAST on NCBI

transcript from alignment at sc0000563:138961..153013+

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00026131 ID=TCONS_00026131|Name=TCONS_00026131|organism=Clytia hemisphaerica|type=transcript|length=14053bp|location=Sequence derived from alignment at sc0000563:138961..153013+ (Clytia hemisphaerica)
CAGATTTGATTGACAACCCTGAGATGTGAAGACGAAAACATGTGTTTTTG
CGGGTCTGTAAAGTGTTTAAATAATCAATGCTCCACTGGCGAACACAAAC
ACACACACTTGATCGAAAAATTTGGAAGGAGTTCTAGTAATTTTGGAAAA
CAAACCTTCATTTTTAACTGACAAAGATGCATTTCATTTCACTTTGTTCA
ATCCTGATAGCTGGTAAGTCTTCATGGAAATATCTCACACCCCCTAATTT
TCGTATATCTACCTCGTATCCTCCACTCAGctaaaactgaaataaaaaag
gggAATACAATCATCCATGCCAGCCTCCTGTCAAGTTTACTATTTCCAAC
ACATCAGAGAGCAAACAAATGACTGCCTTTTCGTAGCCTAGATTCCcagg
atttttataaaattccttGCTTTTTAGTCAATTAAATGTATGCTTGCAGC
TAAAAATCTGCAGACTTTGGGTTTACAAACATTGGAAAGACAAATCTGTA
AAACAACAGAAAAGTATATATCCAGGCTAGCTTACTTTAAGTGCTCTTTC
TGATTTGGAACAGTAAAAAAAGGTGTCCTTctgcttttgttttgttttgt
gctAGTAGAGTTTTTGGGTTGCAGCAAAAAGCCTGATTGGTATTTCACTG
TAGGTGAAGCTATAAGTTTACAAACCCTGGTGACACACCGTGACTATCCA
GTGTCATTATTCTGGGGCTGAGAAAAATTATGTCAGATTAAACTCACTGT
TAGTTATGTtatcgtcaactgctctaacttgggacgattggtcgaaacat
gggacttatttatttatatctggcctgtattttcacttactgttaaatct
ctttgacaacaaatttgttttgatacttccaccaagtttatcaaccaCAC
TTTCTGTCATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTATCAACCacactt
tctgtcataacatgtcacgataactttcactgatagcgcaccctttttaa
ctttttgttttcattcaaaatgaccggacgctgatcggagaattagagaa
cgcccgcacCTAACCACCTATCGgctgatgggattaacaaataacgagtg
tgtaacttgccgcacaagtgacgtcaaacgctccattcagtgtgttccac
tacggatttttttcatttttcgatttaaaagcctacttggtgcgaaagag
aaatcgtgtacttttttaatacgccgttcattaaactcaaatcaaatgac
tttggaggttcggtgaaatggtgaccgaattgccgtcccatgttttgtca
gatagtcccaagttagagcagttgacgataCATTACAAGAAAAGCTTGAC
AACTGATAGAGTCAAAGGCAAACTCGACGGTCTGGGCTAAGTCCATTACA
GGGGGTGAACGATGGCGGAATTCCgaggcaaaatgtttttttgaaattcc
ttgatttccaatacaaaagcaattgaaactcctggatttccaatacaaag
tcaattttagggtagaaaaatctggaatttccgACAAATAATGCGGaatt
tccaagggttcaaataaaaaattgagcagAATTTCCAAAGtactttgaaa
aattgtctGGATTTCCCAGTGCTTTTTTATATCTGAAAATTCCTGTCGTT
CGTCCCctatatcaaattttttctggaagagccctaTAGTTGTTTGGGAA
AATGCGGCAGCCTTTTGACCAGTTCCGCAGTTCAACACTCATTCAGGCCA
GAAATTATCTGCTTCCTATTGCAGAAATAAAAACCCTAATACTCGAGCTA
ATTCTTCATTGGACATCACAAGAAGATTCACAGCGCTATGGCGTGCTaat
ttgaacaaaacttatATTATCTAGTTTCCTGCTTGTTTTACTTGCATCCA
CTGAAGTGTGGAGTAATTAAACCATTGCGTTCACCTTTATAAAGGAGTAT
TGCATAACTACTTACTTCGCATACTTCAGTGGATGCAAGGAAAACCAACG
CAGGAAATTAGATATAacattttataatttataacaGAATTTTTATTTGT
TCAAATTAGCATGCTAACATTCTCCCGGATTAGCAAGAGATAATGCTGCA
AACATTCCCAAGCGACATCCTATAAAATTATCAGGGTTTTATTTCCATAA
TACGGAGCACATAAGTTCCACTATTTCCTGAAGTAATTTAATATACGAAA
CTGAGTCAATAGGTTATTACAATCTACCAAACCACTATTGAATTAGCACA
CGATACATGTTGTAAATCTTCCTGATTTTAAACATAGAggataaaatgaa
ataaataagttaaaaacattagTACAGatatgtttttgagaagctGGTAA
AATGAGGTTTAGAAAGCACAAAAGTAGGTGTAGACTAAAGATTTTGAAGG
CCCATGAATGAGTAAAGACAAGAGcataaattgaattgaatatattttcg
ctgcaacgcAGCAGGATAACCCCATTACAAAAAAAGATAgctttctctaa
tacaatggggaacctagaagaaactgaaaaattgttacagaactaaagaa
aaaatgaataaaatgattatcataatattaataataacaacaaaataatg
aatatgaTATGAGCATGAATCTGGTAACGTGGCCCACTTTTCGATTTATT
ATTTTTCCTACTTTGAGGCCTTGCTGAAATCTCTATAGGTATATAGTCAT
ATCAAATCTTATTGTTTCGGGTCAATCTTGATATGGGCAAGCTTATaaac
agtcattttttcttATATAACAGGTACTCAAATTTTCCTAGAGGGggctt
tctttcaaaatgtgaacgaaaaataaggtttttaaaaaatgatcaaCTTC
ATTGTATAATAATTCATCAACAACATGCTTTTTCCAGCTTGGTTTTTGTT
TATCTCACAGCCAGaggatatgaaaaatgaaaaagtaagaGCCACAGGGG
GGGGCcaagcagttagtacagaaCACtatgtgtactaactgatttttgga
aaaatctgtaCCCCACCACCACCCCCTGTCACTTAGTACACCGTGTACTA
ACTGTCTTTGACCTCGCTCAATATATATACCACCCCCCAAAATAAGGATC
CGTCTCTCTACGGTGCATTCCAGGTGAATTTCACACCCCAGGGAGGTTTT
ATGAGgtgtattttatgtttttacctGTCTTCACCAGGTTTTTACCACTA
ACTActttcaaacaaataaaaatataacaaattatGGAGTAGGTCAACCA
CAGTGGGGGCTGGTGGGGGGGAAAATTGATGAATAACGAGacaaaaacac
acaaaaagagTATTTTCccagtttttccttttttgtaaaaagtataATCA
TATCTCTCTCTCGATgaaactgaggaaaaaagtagTTTTAACCAGTTTCT
AACCTAGTTAAAGTAACAATAATGACTTTCCAGAATCATTTTTTAGACAG
AAAACACAGCATGTTTGTTCAGCAACTTATCCACCATCTTTAGATCATTT
TCTATTTCTCCCGATTATGAATTGGATGATCGGATtaccaaaacaaaaca
gaaaacgttcgaaagttcgaaattttcaaattcgaatgttttattttgaa
tatttctaagaGTTCTAAGAGTTCCTAGAATTGTAATGTCATGTGTCAAG
CTGTTATTAAAAGGTATTCCTGACTGTCCTAGAAAGAAGATACATAAAAA
AGATAGAACCATAAACCTGTCATAAACTGATAACagtaaaaatttgagaa
atctaGTTTAAAATTCTCGTTTTGAAAAcagttaatacaccttttttctt
ccaaaattctgtatacaccaccccttttggcagttagtacactggtgtac
taactgcattttgaaaatttgaaaaatggacccaccACAGTACTAAGTGT
CATGGGTGtcgtgtactaactgcttgccccccccccctgagagCCACAGT
AAGAACCGCCAAAAAAccgccaaaaaaagtttttttggcatataaaatca
attttttccgTTCACAAAGTTATGTCCACACAGATTTGACacagaaaaag
attgaaaagcTTTAGCTCACTGGTAGGGTAGGGagtcaacagccattttt
ggggcaaagtcaaaaaattcaagatgtagtgttttttatgaaaatttaac
ctattgtgaggcattctgagCAATTTTTAacgtcagaagtccaaaattgg
ccgaacccccttGGGGGTACTGATttgcactacaggcaaaaattggaaaa
aatggcattttctgaccttttcaggcctgtaaatttgtcaaaactattta
aaatcttatttttttcatttgctgtactaaattttttgaagaaacaacaa
aataatcgtATTGGGTTGAAAATAGTGCCCATTGGaaccctaaacgagcc
gttttaagccaattttgagtagcaaaatgctttttaaggccaattttgca
agttcataaactgaTTAATTCACACGTCTGAAATTttagagatggaagtc
ttcaataaagtctttaagcaaattgaatttcaagtttttcacttttttca
aaaattcataatggcgttttcaaaaatcgctttttagcaaaaaaaaaatt
atcaaataggtctgggatgcgtctatgtccgccattttggaaataaaatc
tttgctaagagccatttttcaggcaaaaacccaaatttggactgaaaaaa
tctctaaaatgacaatagaaatggacccgaattttcttgcagtgatagta
ttctggaaatactgcaggaaaatcaaagtcatctgggtttGGCATTTGGG
TATTTcccccattttggaattgaaattcctgctaaaacgcaataatTTAA
GCtaaaatcccatttttgactggaaaaatcttaaaaatggcaacagacat
gaacctaaaatcttttttcagtgatagtcttctggaaatactccagggaa
atcaaaatcatttgggtttaggatttgggtatatccgccacatgtccgca
acaaaaagttatgtccgcaacaaatcATGAAGTTTTTTCAATCTCCAAAC
ACCAATTTTaggtttctttgacaaattattgCATCTAAGGTCATTTTAAG
TTGGTTACAACGTTACaaccagaaaaaagttccataATTTTCCATTGGCA
ACATTTCCAGTTTATTTACCTCTTTCATATGTATTttatgttgcggacat
aactctTTCGTCTAAAATGTTGCTGATAAAGTGTATTTGCAAGCTGAcat
gatgttttattatatggaagtaatgcttaggctattagaaatagaaaaca
agtaCTCTGATGCCAAGTTAAGGtccaaaataaaagttttaacagaatta
aatgaactttttgttttgttgaaaatgATGGTTCTGAACCTGTGAGCTTG
AATAAAGGATAAATCATGCATTAGNtttgttttgttgaaaatgATGGTTC
TGAACCTGTGAGCTTGAATAAAGGATAAATCATGCATTAATTTGCATATT
AAATTCATTGTGTAGTGTACAGACTAGTTAGAATTGCTCCAATAGTTCAA
AACAGAGTCATATTCTGTAGCAAAttgtatgttgcggacataCAGTAACT
ATTTAAAGTATTAATCAGATTTTTAACCCTCTTAAGCAGTTATGCTAACA
CCTTGACAATACTAAAGAGTTACATTTATAAGTACCATGCATTTCcttgc
ttttttcaattttttgtgtcctctagggtcgttcttctattagaaatatt
agaaagttttaatatcattgtggagtcttcttttgttctttaaaaaaaac
atgtaataactgaagtcaaaccaaaccaaatcttttggttttatattgat
ttagtctCAAATATTCCATAAATTTTGGCAACAGAAAACGACactccaaa
attttaaataaatgatGTAAAATATTCTATGGTTCTACCCTGGAagaaaa
aagttatgtccgcaacatagcATTATTACCCATTTAaccctttctattga
aaagGTTGAGTggattttcaaggaaaaatccTATTTACTGATTATAAAGA
TGTACAACAGTTAATgtcaagctcaaaatttaacttttaaaattagatta
tgacaaaaaatgatatatgattggattctcttttacagatacatcttcaa
ttttcaggaaatcatagttacaaatacctttcaagacaacaaatttcaat
gattaagttttggttcaagtacagcaaagtattaaaagccaaataataac
tcagtttaatgtttattgctgattttaaagtaaatttgacaaaaagttcc
gcaaccaacaaggtttaattttctaattttttattgatcacagtgctgca
aataacagccggtgaccggtaattaccggtcatttcatagtttctaccgg
ccattctgaagctcagtttttcattttgtccggttaaaatttgaagatta
gagGCTTAGATTAATACTTACAGCGCTTCATtaaaataggtgtttagcca
atcGAATAATCCAATAAGTCAATCTGTAATAACAGACTACAAAGATGGTT
CCGCCAGACCCCCTGCTCGTTACACTCGAAAAATTTccggccaactgaaa
tttccctatttgcagcactggatcaactgaaatatagcaaacttgttttt
tttgaaagcttatAATGAGTCCTTCAAATCTAGGATGAAGAAGTTACCTG
ATTATagccagttttcttttcatgaagtcaaactttTTGGGAATactttt
tagtattttagatttttttcttggaaaaagtgtcagaatttgaaaaatat
gtcatACTGGGCGATAGATTATGCATATTTTATCTCAAATGAAGTaaaca
aagagttttttgccaaatttgtctgATTATAACTACTCTAGGTCAAATTT
CTGGACCAAGctgaaaattgaagtcattgataaaaagattatccaggaat
aaaagtgaaattcaaaacttNAGctgaaaattgaagtcattaataaaaag
attatccaggaataaaagtgaaattcaaaactttattttttccaattttt
ttcacctATTTGGGTGACATTACAGTACCAGATTCATGCtcatataagaa
atatttttaattttattttatgacaatttctttgagtagttttatttgaa
aagttcttcctgttacacaactcaccccctcccaccctgggaaaacacac
taagttCACGCACACACATTCGAACAGAAGCACATGCACACACACAAACA
AGAATATTCCtcttcagctttgtatttgtccAACTtaaataccgtaagtt
ggtctaatgtcaacatcacTATTCAAATTTCCACACCCTTTATTAGAGAA
TATGTTTTatcatttcaaaaactttttctaatcttgtagCACTTGTTTTA
CATACGTATGCGCATACCGGGCTTGGCCGGGCTAGTGCACATCTCATCCT
GGTGGATTTAAATCTAAAATTCCTCCCTTCCGAGATGGCTTCTGTTTTAG
CCTCTAAAATCATGTCTGCCTCATTAAACTACCCTGTCGTATAATGTaat
taatttttcttcatttttacttTCAGTTTTCCCAATGGTGAAAAACCAGC
AGTCTCGTCATTCTTGCAAGAAAGTTGACCCAACTAATGCTGAATGTCTA
CAAGACATCAATAAATGTTCCAACGTTACTTGTGAAGAAGATGATAATCA
CTGTATGACTGTTTACAAACTTGAGAAAGGTCGCTTTGTACCCTTCTTCG
GTGGATGTTTTGGAACACCTCACGACCAGTCAACTACTTCCCATAACAAG
TGTGTATTGTATCAAAGAAACCCTCACTACCCTACCCACTATGATTGCTT
TTGCTCAGGTTCCTTTTGCAATGCAAATATCATTTTTCCGCAGATCAAGT
CTACCACAGGTATTGCCACTTAAGattttcgaattatttttaatgcattt
ACTTTTATCATTATTCCAGATCTCCCACGCGACACAATCGATTATTCATC
CATCGAGTCGACTGTTTAACGATTGGTTCTAAGGTGATCTGTTGTTAAAC
AACTGATGgattgatactcaagattttttaataTTCTAAATTACCTTTCG
GTTTTAAAATGGAACCATTCGATATCCAATCCATCGATTGGATATTGATT
GGTGAAAAAAATGTATCGACTGGGAGAGTCTGGAATATTTCGTTGTGTTT
TAATTGTTTGAATGTGAAATCCGTATCATTTAAAGTTAGATAGGAACCGT
GTACGTGGGATAAATTTTTGaggatttctttttaaattaaaatacaaaaa
tgcatATACCATTCAAAGTAATAACTTGATTTCAACTCTAAGTACGTTTA
TTAATGGAATTTGTGGCATGCTTTGATAATGAAGAGATGGGTTCTAGGCT
GACCACAATCATTCTCTTTCTTCAACCTTTTGATGCGATAATGATTGTAG
GATATTGTATCGTGTATTGCTCTTTTCTCGCGAAACAAATCATGGAAGAC
CACAAATGGCTTTTTTATGAGATGCCTTAAACCTGTTGTTTGATTACAAA
GTATTGTCTGTGTAAATGTCTTTATTTTTCCTGGAATATTTGCTCTGATT
TCTTGGggttttgaagatgttttacaTAACTTAACCTATAACCTCACATG
GATACCTTGTTTTTTCAACGGTGCGGTTTATTTTTTTGCACTTACAATat
cgtgtttttttttgtcatgtAGAACAACCAGTGAGAAACACGACAAAAGC
ACTTTCCAGTTTGCAGCCCACTCAACGTACCGACTCTTCCGAGAAACTAT
ATCTTTATTATATCCCGGCATCGATCTTCCTAATGACTATGGTTCTTGGT
GTTGCTCTATTCTTTTGGATAAAACGAAAACGCCGTCGCCGGAATAGCCA
TGAAACCCTGCTGACAGAATTTAACACGACCATGACGCAACCGAAAACCT
ATCCAGCGTCTTTTCTCGAGATCATTCACCAAGGACAAATGAACACTATC
TGGAAAGCTACTTTTTGTCAGCGAGCGGCTGCCATCAAAATTGTTAATAA
GCTTGACGTGACCCAATGGGTCAAcgagaaagatatttttctcaatCATA
AACTTAAACATGATAATGTTGTAAATTTTATATCAGCCGAGAGACGTTTT
AAAGAGACGACTGTCCAATACTGGATCGTTACTGAGTACCACGAAAAAGG
TTCATTAGCGAACTACTtattgaagaatattttatccAAAGAAACATTCT
TGAGAATGCTATATAGTACAGTTAAAGGACTTGTATATTTACATTCGAAT
AGTAAAATGAAGCCCATGGTAGCTCACAGAGACTTGAAACCAGCAAATGT
TTTGGTGAAGGCCGATTTATCGTGTTGTATATGTGATCTTGGTCTCGCTT
TACCTCTGCCTGAAAATATTGACGTCTCCAGAGAACTCTGTCAAGTAAGT
ATCCTTCGTTTTTTGGACCTATCTCGGAGGTTttttaaattaacctttgt
taaCCTTTCCTCAAGTTGTTCTATACTATTGTTgccattttttctattgt
cttatTTCacaatcatcaggtaggtccattcagcatgtagcttgttttaa
TTTCAATATCTCTTCAATATTATATCTACAGTGTCCTGTTTATTCTGCAT
CGTGCTATGACATTTCACCAGGATTTAttattatttacatttttaatcAT
CgaccaaaaaagtaaaatttgaatCAACACCTTCAATTTTCCTGGCAGCA
ACAAATAATCATAGCGTATTGATTGATCATAAAATCATTCTTATTTTGTC
AAATGAGCAGGCTGGAACAAAGCGTTATATGGCGCCAGAAATTTTACAAG
GAGCAGTCACATTTTATCAAGAATCCTTCTTGAGGGCGGATATGTATTCG
ATGGGTCTTCTATTCTGGGATTTGCTCTCTCGCACCAAGATAGATGAATC
TATAGGTATGTTTCTTTTCATTCGATCTCTTGTGGAACAATAATTACTCT
AGAACTTTTTGGGTGTCTAGAATGTATTTTAGTGAATGTTTAAAAATATA
TGCCAGCTGACTACATATCGGTCGCTGTAAAATAAGAGTGCCTTATGTCC
AATACTACAAACATGAGAATACTTAAAATGCTATTtcctcaaaatgtcaa
aaatggaCATAAGGCACTCTTATTTTACAGCGACGATATGGAGTGTAGGA
AATGTTATCATGTCCCAATTCAGATATCTATCTAGTGCTTATGCCAATTT
TACCTATTTGTTCCTGCTTTTAGAAGTTGAGGAATACAAACCGCCGTATT
CAGGACTGGTGAATTTCAATCCGAGTGTAGATGAAATGTTGAAATGTGTT
GTTGAAAATCACAAGCGACCTCATATCCCAAACCATTGGAAGGAAACACA
GGTACTGGCCAAGCTTTGCTCTCTCTCCTTTGCAATTTAAGTTTCACAAG
AACGAGTCACACAACGAGTCAATTTGATATTGTCACCtctctactttaat
gggataaactttcgcggggattaaatttcgcggggacttaatttcgcggg
tggcactattgggtggtaatattttcacgattttgtgaNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNTATTTATTTggcatattttgagttt
tgtttagaaatatttcgcgaatgaggcccttccaaatttccattgggact
taatttcgcggattttcgtgGATGACAcctaaatccgcgaaatccgcgaa
atttaatccccgcgaaagtttatcccattaaagtattctgTCGAGATTCT
AGGAAAGCTAGGTTTATCCTTTTAGAATCAGTTTTTTACCCATCATAATG
CTAGAGAATCTACATTTTCGTCCTTTCGCgaattttttttcggtcttttt
atcttgaaaccATAAAGACTTCAGCACTTTGAAAACGTTTTAAAGGAATG
ATTCGGCACTGATCTTGGCCTGACAATTAAAACATCTGCATTGGTATCAT
GCAATTCTATATGTCATGGTTCAAAGCCATTCAAAAGGCTGTGCAAATAA
CTCAGTAAATTAATCTCTACTTTCACATGAAGCTGATCTCATTTTGTGGC
TGCCTATGTGACGTCAATACGTTTATGTTCAGGGTTGGATTTTTTCGATC
ATTTTTTGTGGTTATATTTTGCCAGTGTGTTTGTCGTTGAAATCTTATCT
gggatatttttttttatttttaaggcgGTCTCAGTAACCTCATTCTTATC
ATGCCTCATTCTGCCTCGTTTTGTACAAATGTAATACTTGGTAATATTAG
AATCCCTAATTGCGTAATAATATGGGTGCCGGGGATCCGAAGGTTTGATG
TATCTTGGATCATTGAGACTCAGAAAATTTTCTCTTCACCGTGATAGAGA
GATCTTTAGATGAAAAGTCTGTAGTCATTAATTTATGTTTCCAGTCCCCT
TTTAGAGTTCAAGCATAACGTTTGCCAATTATAAACACCCTGCTTTTCTT
CCTTTCTAGTCCTTTGTGACGATCGTTGAAACAATGGAACTGTGTTGGGA
CGACGATGCTGACGCTCGTCTGACGTCACAATGTGTCGCTCAACGAATCA
GAAGACTTATTCATTCACCGCCCGATAACACATTCCAATCGCACGCCCTT
GAGCAGCTCAAAGAGGGTGAGAAGGAGAACTCGCAGAGTAGTAGTATTAG
TTCAAATTCAGCACTTTTGTGGGATAATTCGTCTACGAGGAAAGACTGTA
CATCCAACAAAAGCATAGGTAGCTATTCAACGACAGACGACCATAGTCAA
TATTCCTTATCATCTTCCTCCAATACTGTACTAACGAAATGTAACGCTTG
AATTGAGCGTGGCGCACGTGTATAAGTCGCTTGATTTGTCCTGTTAAATA
AATATCGAAGTGGGTTCAATTTCCTGCTGACTTGctctcaaaatctaagt
ttcggAAAATATACTCTCTTCTCAAGAAACTAACAGCATCGGgtgtcgtt
ttcaaaatattattgttCGACATTGTACTCATTGTTTGAAAGCGTTTACG
TTTTTATTTCTCAATCAATATGATATTCTATGAGCTGATTTTAAAAACGA
GGCCCTTAACGCTTTTTTGCATCTCTTTGAGAACCGGATGTGTTGACCAT
ACACTTATCTTGCAAAGAGTTTGTGAAAATTCTGgataattattcaaaaa
actAGCGTGGCGATTTACATGACAAATTTGTACATTCTATTATATACTAT
ATACTATTACATTATACTTTATATACTACTGTATACTATACTTATATAAC
ATATATGAAATCGTATTTATTCACCGTACATTAGTACTTCGGGCATGCTC
AGTACGCATCTCATAGGTTTAAGTAACAGGACGAACAAATTTCTCAATTA
CAAAAATATCTAGAAAGAGGAAGGCTATTTTTTACGTCGGGTGTGAAAAG
AGCATGTCTGAAGCCTTTATTTTCAGTTATTTAGAAATCCTATGAAAGCA
TTTCTTTGCTACTACGATAGTACACACACTAgaacaaattttggttaaaa
cacgcttattttagctttttgtaATTTGATCCGTCCGTTTTTAGTtggaa
agtaaatttttttcgtgatatccatgacgtaatgttttatacggaaacac
taAAGAAAACGGGGGTTTGTgccactagttttattgttCATAAATTCAAA
ACTAGTGGCAAAACACGTGCATCTTTTTAGTGTTTCCGTATGAAAGTACC
ATCATGgttttcaaagttcaaagaAATGCTTTCAAACATCATGTAAATAT
GATTTTTAGTTTAGTTACTACTCGAATCTTTTTCACGATTCTCAGGTTAA
TCAATTCGTTCGTTGTGGTGACAGGATCCACTTTGAAATTGTTAGGGCCA
TGATATGCCGACTAAAGTGGCGCCGACGGGCAAAAGGATCTTTTTTAAGG
GATGAATACGGAATTTGGTACTAATGTTAGTTAATGTTAATGTAATGACA
ATGAAACCTTTCTTATTGTTGAATTTTGAATAGAGGAAAATGCagaggtt
tttttttaaatcttgctttTCACAATAACAGCCAAAATCAATATTCTCAA
ACACTATTCTTGTGATAATGAGTACTTTTTGTCACCACACCACGGCAACG
ACAAAGATTGATAACTCGTTATTCATGGTATTCAAGGCGttatcttttat
acggaagaaCCCAAAACACTAAGCGTTTGCCACCAGTTCCAATTTCCAGA
CTCATCCAAGATTCATCTTTTCAAAAGATGTCAGCAAACGCAAAGTCGTC
TTTGGGTCTCCCGTATGAAATATTACGCCATGAATTATAGACTTGCAATG
TACATATTCATTATACAAAAgtgtatttttatgtttttatattttacccC
CTCATTATATACATACACATATTAATTATTGTTATATATCAGCATGGTTT
AGAGAACCGTATTATCCAAATATATCCCATATATAGGTTCGGTTACATCG
TGCAATTAGTTTTACGTCTATCCTCCATCTGAAAAATAACTTGACATTGA
CCAAGATGATAACGCTCCGCGTAGCATACGTCATAATCATAGATTtatta
aag

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_014692	XLOC_014692	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000563	supercontig	sc0000563:138961..153013 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.888889	0.12459	0.722298	0.773262	1.91587	1.29785	2.94969	5.05285	1.10729	1.99203	0	0.298797	0.955205	0.379073	1.33092	0.189726	0	1.12047	1.09194e-08	0	3.26821	9.10771e-05	2.74915	1.62946e-10	2.31572	3.82881	4.29425e-08	0.637769	1.3699e-06	8.85954e-06

Blast

[Close]

BLAST of TCONS_00026131 vs. Swiss-Prot (Human)
Match: AVR2B (Activin receptor type-2B OS=Homo sapiens GN=ACVR2B PE=1 SV=3)

HSP 1 Score: 253.447 bits (646), Expect = 7.792e-73
Identity = 153/470 (32.55%), Postives = 236/470 (50.21%), Query Frame = 3

Query:  285 LQDINKCSNVTCEEDDN---HCMTVYKLEKGRFVPFFGGCFGTPHDQSTTSHNKCVLYQRNPHYPTHYDCFCSGSFCNANIIFPQIKSTTEQPVRNTTKALSSLQPTQRTDSSEKLYLYYIPASIFLMTMVLGVALFFWIKRKRR----RRNSHETLLTEFNTTMTQPKTYPASFLEIIHQGQMNTIWKATFCQRAAAIKIVNKLDVTQWVNEKDIFLNHKLKHDNVVNFISAERRFKETTVQYWIVTEYHEKGSLANYLLKNILSKETFLRMLYSTVKGLVYLHSN------SKMKPMVAHRDLKPANVLVKADLSCCICDLGLALPLPENIDVSRELCQAGTKRYMAPEILQGAVTFYQESFLRADMYSMGLLFWDLLSRTKIDESIVEEYKPPYSGLVNFNPSVDEMLKCVVENHKRPHIPNHWKETQSFVTIVETMELCWDDDADARLTSQCVAQR---IRRLIHS 1646
            L+  N+     CE + +   HC   ++   G       GC+    D +     +CV  + NP     Y C C G+FCN           T  P     +      PT  T  +    L Y    I  ++++  V L FW+ R R+      + HE       + +   K  P   LEI  +G+   +WKA       A+KI    D   W +E++IF    +KH+N++ FI+AE+R     V+ W++T +H+KGSL +YL  NI++      +  +  +GL YLH +         KP +AHRD K  NVL+K+DL+  + D GLA+             Q GT+RYMAPE+L+GA+ F +++FLR DMY+MGL+ W+L+SR K  +  V+EY  P+   +  +PS++E+ + VV    RP I +HW +      +  T+E CWD DA+ARL++ CV +R   IRR ++ 
Sbjct:   38 LERTNQSGLERCEGEQDKRLHCYASWRNSSGTIELVKKGCW--LDDFNCYDRQECVATEENPQV---YFCCCEGNFCNERF--------THLPEAGGPEVTYEPPPTAPTLLT---VLAYSLLPIGGLSLI--VLLAFWMYRHRKPPYGHVDIHEDPGPPPPSPLVGLK--PLQLLEIKARGRFGCVWKAQLMNDFVAVKIFPLQDKQSWQSEREIFSTPGMKHENLLQFIAAEKRGSNLEVELWLITAFHDKGSLTDYLKGNIITWNELCHVAETMSRGLSYLHEDVPWCRGEGHKPSIAHRDFKSKNVLLKSDLTAVLADFGLAVRFEPGKPPGDTHGQVGTRRYMAPEVLEGAINFQRDAFLRIDMYAMGLVLWELVSRCKAADGPVDEYMLPFEEEIGQHPSLEELQEVVVHKKMRPTIKDHWLKHPGLAQLCVTIEECWDHDAEARLSAGCVEERVSLIRRSVNG 487

The following BLAST results are available for this feature:

BLAST of TCONS_00026131 vs. Swiss-Prot (Human)

BLAST of TCONS_00026131 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
AVR2B	7.792e-73	32.55	Activin receptor type-2B OS=Homo sapiens GN=ACVR2B...	[more]

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TCONS_00026131 (transcript) - C. hemisphaerica