|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00026121 ID=TCONS_00026121|Name=TCONS_00026121|organism=Clytia hemisphaerica|type=transcript|length=748bp
TCTGAAGACAACAACttcaagaagaagaaaacgacAAAAATGAAGGCTTT
TATTTTCATCACTCTTGTGGCTGCTGCCTACTCCCTCGAAGTTGGAACAC
AAACCGGTACCACACCACCTGCTGTCCCATGCCCAGACTCCCTCTGCAAA
GGAAAATCTGACGGAAACTTCGAATATCACTACTATGGACAATACAGAGC
CAACTACTTCCTCCAATGCTCCAACGGATTAGCTTCATGCCAACCATGCT
TCCCATTGTCCTTGGAATTCAGCGAAGGATGCAACCAATGTTTGTACAAC
CGAAAAGACGAATGCGTCACCACACAACCATGGGAACNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACC
ATGGGAACCAGCAACCACCTTCGCTTGCCCAGACAAATGCCCAGCCCGTG
GACCACACTTCAGTGGAAACATCAAAGACGACCATGAACCACGACAATAT
GTCGCTTGCTTCCACGGACAAACTGTCGGATGTATCGCTTGCCCCTCAGG
ACTTTTTTTCAACGAAAGATGGAACGCCTGCTTGTACCAAGGAAAATACA
AGACCGAACCAGAATCCccaccaaaacactaaacaGTGTTTCAATTGTAA
TCGATTCAAATGGCATGAAGATCTCAACAGCCGATCAAAATAATGACAAC
AAAATGACAACAAACTATAAAAACGAAAACATTTattcagcatttttt Run BLAST on NCBI protein sequence of TCONS_00026121-protein >TCONS_00026121-protein ID=TCONS_00026121-protein|Name=TCONS_00026121-protein|organism=Clytia hemisphaerica|type=polypeptide|length=230bp
SEDNNFKKKKTTKMKAFIFITLVAAAYSLEVGTQTGTTPPAVPCPDSLCK
GKSDGNFEYHYYGQYRANYFLQCSNGLASCQPCFPLSLEFSEGCNQCLYN
RKDECVTTQPWEXXXXXXXXXXXXXXXXXXXXXHGNQQPPSLAQTNAQPV
DHTSVETSKTTMNHDNMSLASTDKLSDVSLAPQDFFSTKDGTPACTKENT
RPNQNPHQNTKQCFNCNRFKWHEDLNSRSK Run BLAST on NCBI transcript from alignment at sc0000563:63208..64236+ Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00026121 ID=TCONS_00026121|Name=TCONS_00026121|organism=Clytia hemisphaerica|type=transcript|length=1029bp|location=Sequence derived from alignment at sc0000563:63208..64236+ (Clytia hemisphaerica)
TCTGAAGACAACAACttcaagaagaagaaaacgacAAAAATGAAGGCTTT
TATTTTCATCACTCTTGTGGCTGGTaagtattttattttgttaacaaATA
CATATTTCTTTGTCCTTTCTCAGGTTATAGTGGATTCAAGGGATATTATT
TTATTGAAGCATAGATATGTGCAAATTAGGGCGTTTCGCCTGTTAAAGGC
AAAGCTCAATATCtgaaatttgcaattttttttttctcaagaatgtCTAG
acaatgacgtaatcttgacttcaACCTGATTGATacaattgaaataattt
tcaaatatctttACCGATGTATTGTAAACTAACAAAGCAATTCTTGTTTC
TTAGCTGCCTACTCCCTCGAAGTTGGAACACAAACCGGTACCACACCACC
TGCTGTCCCATGCCCAGACTCCCTCTGCAAAGGAAAATCTGACGGAAACT
TCGAATATCACTACTATGGACAATACAGAGCCAACTACTTCCTCCAATGC
TCCAACGGATTAGCTTCATGCCAACCATGCTTCCCATTGTCCTTGGAATT
CAGCGAAGGATGCAACCAATGTTTGTACAACCGAAAAGACGAATGCGTCA
CCACACAACCATGGGAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNACCATGGGAACCAGCAACCACC
TTCGCTTGCCCAGACAAATGCCCAGCCCGTGGACCACACTTCAGTGGAAA
CATCAAAGACGACCATGAACCACGACAATATGTCGCTTGCTTCCACGGAC
AAACTGTCGGATGTATCGCTTGCCCCTCAGGACTTTTTTTCAACGAAAGA
TGGAACGCCTGCTTGTACCAAGGAAAATACAAGACCGAACCAGAATCCcc
accaaaacactaaacaGTGTTTCAATTGTAATCGATTCAAATGGCATGAA
GATCTCAACAGCCGATCAAAATAATGACAACAAAATGACAACAAACTATA
AAAACGAAAACATTTattcagcatttttt Coding sequence (CDS) from alignment at sc0000563:63208..64236+ >TCONS_00026121 ID=TCONS_00026121|Name=TCONS_00026121|organism=Clytia hemisphaerica|type=CDS|length=1386bp|location=Sequence derived from alignment at sc0000563:63208..64236+ (Clytia hemisphaerica)
TCTGAAGACAACAACttcaagaagaagaaaacgacAAAAATGAAGGCTTT
TATTTTCATCACTCTTGTGGCTGCTGCCTACTCCCTCGAAGTTGGAACAC
AAACCGGTACCACACCACCTGCTGTCCCATGCCCAGACTCCCTCTGCAAA
GGAAAATCTGACGGAAACTTCGAATATCACTACTATGGACAATACAGAGC
CAACTACTTCCTCCAATGCTCCAACGGATTAGCTTCATGCCAACCATGCT
TCCCATTGTCCTTGGAATTCAGCGAAGGATGCAACCAATGTTTGTACAAC
CGAAAAGACGAATGCGTCACCACACAACCATGGGAACNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACC
ATGGGAACCAGCAACCACCTTCGCTTGCCCAGACAAATGCCCAGCCCGTG
GACCACACTTCAGTGGAAACATCAAAGACGACCATGAACCACGACAATAT
GTCGCTTGCTTCCACGGACAAACTGTCGGATGTATCGCTTGCCCCTCAGG
ACTTTTTTTCAACGAAAGATGGAACGCCTGCTTGTACCAAGGAAAATACA
AGACCGAACCAGAATCCccaccaaaacactaaacaGTGTTTCAATTGTAA
TCGATTCAAATGGCATGAAGATCTCAACAGCCGATCAAAATAATCTGAAG
ACAACAACttcaagaagaagaaaacgacAAAAATGAAGGCTTTTATTTTC
ATCACTCTTGTGGCTGCTGCCTACTCCCTCGAAGTTGGAACACAAACCGG
TACCACACCACCTGCTGTCCCATGCCCAGACTCCCTCTGCAAAGGAAAAT
CTGACGGAAACTTCGAATATCACTACTATGGACAATACAGAGCCAACTAC
TTCCTCCAATGCTCCAACGGATTAGCTTCATGCCAACCATGCTTCCCATT
GTCCTTGGAATTCAGCGAAGGATGCAACCAATGTTTGTACAACCGAAAAG
ACGAATGCGTCACCACACAACCATGGGAACNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACCATGGGAA
CCAGCAACCACCTTCGCTTGCCCAGACAAATGCCCAGCCCGTGGACCACA
CTTCAGTGGAAACATCAAAGACGACCATGAACCACGACAATATGTCGCTT
GCTTCCACGGACAAACTGTCGGATGTATCGCTTGCCCCTCAGGACTTTTT
TTCAACGAAAGATGGAACGCCTGCTTGTACCAAGGAAAATACAAGACCGA
ACCAGAATCCccaccaaaacactaaacaGTGTTTCAATTGTAATCGATTC
AAATGGCATGAAGATCTCAACAGCCGATCAAAATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00026121-exon-sc0000563-1491911889:63208..63280 | TCONS_00026121-exon-sc0000563-1491911889:63208..63280 | Clytia hemisphaerica | exon |
| TCONS_00026121-exon-sc0000563-1510915933:63208..63280 | TCONS_00026121-exon-sc0000563-1510915933:63208..63280 | Clytia hemisphaerica | exon |
| TCONS_00026121-exon-sc0000563-1575043694:63208..63280 | TCONS_00026121-exon-sc0000563-1575043694:63208..63280 | Clytia hemisphaerica | exon |
| TCONS_00026121-exon-sc0000563-1491911889:63562..64236 | TCONS_00026121-exon-sc0000563-1491911889:63562..64236 | Clytia hemisphaerica | exon |
| TCONS_00026121-exon-sc0000563-1510915933:63562..64236 | TCONS_00026121-exon-sc0000563-1510915933:63562..64236 | Clytia hemisphaerica | exon |
| TCONS_00026121-exon-sc0000563-1575043694:63562..64236 | TCONS_00026121-exon-sc0000563-1575043694:63562..64236 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000563 | supercontig | sc0000563:63208..64236 + |
Blast
The following BLAST results are available for this feature:
|
