TCONS_00026119 (transcript) - C. hemisphaerica

Overview
NameTCONS_00026119
Unique NameTCONS_00026119
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1904

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00026119 ID=TCONS_00026119|Name=TCONS_00026119|organism=Clytia hemisphaerica|type=transcript|length=1904bp
TCGTAATCTGAAACAACTCTTCTTAGGGAGTGATCGTCTAGCAGTGACGA
TGTAGGTTAGTAGAGACGGAAAAAACCGTTCGTTAATTAATACAAAAtgg
cagtttttgaaaaatcaacttgTCAGTTTTTCATCATCTTTCTTTTACTT
ACTGGGACGACAGCTTCAAACATATTACGTTTAAAAGAAGTCAATAATGG
GAATTTCATTCTAAAAGAAGAAGACAAAAAACATGCGACAGCACCATACA
AAACATTCACAGTTCAAGATACAGTTCACTGTATGGACAAATGCACCGAT
GACACTGGTTGTAAATCAGTCAATGTGGACGAAAACCAATCACCATTAGA
ATGTCAATTAGTCGCTAACGATCGCAACGATGTGGACAGTTATGTTGATG
CAACAGGATTCAAACATTATGATACAGgTGAAACAAAGCTTTCGACTTTT
GTCAACCCAAATTTCCCAGGATGCATTGTCCCACGTTCCCACAATTGCTT
GAAGATTGACAGTCAAGATGATCTCGTTTTCATGTCGGAAGTAGACACAC
ACTGTAACCGCCTCTATGCTTATTTCCATTTTGATGTAGAGACAGGGCGT
CTTTTTCACCATTGTACTGGCGTTCCCGTTTGTTTAGTATCATCGCGACT
GGTGATTAGTTTTAATTGCCCTACCTCAAACAAAGAAAGCGGTTCCAGCT
ACGCGAATGCGTTTCGAAGGACTTTCCAGGGTTACCTGAGCCTTGGTGGA
TACAGCTTCTACTTGGAAAGCTCTGATGGTTCATCTGGCCAACTGATCAA
GTCTACTTCAACATCCGCGGGTGGCACTCAAAATCACAGAGTCTTCAATT
TCCCTACACTCGTCAATGCTTCCCCCAAGAAAGTTCGTGTTCGTGTTTAC
GCGTCATCAACATCCAGTTTGAACAGTATCCTTTTAACCATTGCTTCATC
ACCAACGAACTACATCTACACTGGATATTCTGATGATTTTGCACACACAA
CTAATTCTTGGAACAATGTAGCTTATGTTCATGCAGCTAATTTCATTGCT
CCAATCACTGGATATTATCATTTTGCACTCACGTGTACGCCATATTGCGC
TCTCTTTCACGGAAACACTGAATcaaccaaagttgatatctttCACAACA
TTGATGCTGCCGGTACTTTCATGAGTCCTTCGCGTGCTGCTGAATACGGT
CCTGGTTTGTATATGGAAAAAGACAAGACGTATTTCTTGGAAACAGTCCT
CCTTGATACCACCACATTTGAATTCATTGGTCTCATGATGCTGTTGCCCG
GAATCGATGATGAATGGAAACCAGTCAGTGACAAATATTTACAAAAGATT
TAAAAGAACATTATCTATTTCTCCTTGTGAATTTCGTAAATAAATCATAC
AGTGTGTCCTGAAAAAATCAGGACAGATTTTTATAaagtcccagctggca
cacaacgttgtttcaacgtttatctaacattcacaacgtccatataacgt
tagatgaacggtgaaacaacgttgtgtgccagctgagatAGAATGCTTAA
GACTGATTATCTTACCGGAGTTTGAAACGATTGAAATTTCGCTTCGTTTT
GTCGAACAAGCTCGACTAAATATGTATCAATATCCGATTTTCCTCACGTC
AAATATCGGCTTATTAATGTAACTTAACTTACATGATAAATTGAGccaaa
tttaatgatttttgttttgaataaaagGCTTATGCACACCACTATTAACT
ATGGTGGGTCCTCTGTGTCGTGGCATTTTTGAACCCAGAGAAAAATCCCC
AGAACCACTTGCATgacttgttttattttcatatttatcaCTTGTAAAGT
ATTAACCTGTAAATaatgatataaaaatataatattgcactgactgaaat
ttaa
Run BLAST on NCBI

transcript from alignment at sc0000563:51197..57055+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00026119 ID=TCONS_00026119|Name=TCONS_00026119|organism=Clytia hemisphaerica|type=transcript|length=5859bp|location=Sequence derived from alignment at sc0000563:51197..57055+ (Clytia hemisphaerica)
TCGTAATCTGAAACAACTCTTCTTAGGGAGTGATCGTCTAGCAGTGACGA
TGTAGGTTAGTAGAGACGGAAAAAACCGTTCGTTAATTAATACAAAAtgg
cagtttttgaaaaatcaacttgTCAGTTTTTCATCATCTTTCTTTTACTT
ACTGGGACGACAGCTTCAAACATATTACGTTTAAAAGAAGTCAATAATGG
GAATTTCATTCTAAAAGAAGAAGACAAAAAACATGCGACAGCACCATACA
AAACATTCACAGTTCAAGATACAGGTATATATACGTTAAGTTTAAATCCC
GGGCTTAGAGAGGTATCTTCAACTTTTCCCTAATCCAGGTCATACATTTT
GTACCCCTCAAATCAAGCCTATTTATTTATCAAAGTTGATAAATTCAACT
TGAAGATTTGAACTAATATCAAGGGACTGGATTTTCTCGATTGTTCTCGA
TTGTTCCCGCGCGATCACAATTTTGGAAAAGTTCTTTTTTAGTCAAtatt
gctttgtcagcataagacCCTACACCTTCAGTGTAAGAATGTTATATTAC
ATTATCTACAAAATTGATTGCTTTTTATTCTGgactttcaatttttgaat
gaaattgttGGGACGTTTTTTTGGGATTTCGGAAAATGAAATGGTCCGGA
TTTCTTTGTAATTGTTGTACGTTACTTTATAACTACAGTTCACTGTATGG
ACAAATGCACCGATGACACTGGTTGTAAATCAGTCAATGTGGACGAAAAC
CAATCACCATTAGAATGTCAATTAGTCGCTAACGATCGCAACGATGTGGA
CAGTTATGTTGATGCAACAGGATTCAAACATTATGATACAGGTATTTTAC
ATGCTTAgcaaaacttttcgaaaaaagGGCCCTGGAGGAAATAACTACGA
ATTTACCTTTTTCGGTGGGTAGTGCATCACAGTTTACAAAACACACTCAG
GTTCTTTTCAAAGTATTTGCACAGCTTATATTTAGAAGATAACCCAAGAT
ACTCACCGTATATTGTTGAAGTTTAAAACAAGTGTCACATACCCAGTAAC
TCTTATTGCCGAAATTATTCAAGTTGTCTTTCGGAGGGAGTTAGTTATTG
TGTACGTAGGGAGCACTTGTCCAGGAAATCGGACCCTAGAGCCAATCAAC
ACAACAAGTAAAGGATGAGGTTTAAGTTTAGAGATAAAACGAATTTGAAa
ccatgcaaaaaatcacattttcacatttttaggTGAAACAAAGCTTTCGA
CTTTTGTCAACCCAAATTTCCCAGGATGCATTGTCCCACGTTCCCACAAT
TGCTTGAAGATTGACAGTCAAGATGATCTCGTTTTCATGTCGGAAGTAGA
CACACACTGTAACCGCCTCTATGCTTATTTCCATTTTGATGTAGAGACAG
GGCGTCTTTTTCACCATTGTACTGGCGTTCCCGTTTGTTTAGTATCATCG
CGACTGGTGATTAGTTTTAATTGCCCTACCTCAAACAAAGAAAGCGGTTC
CAGCTACGCGAATGCGTTTCGAAGGACTTTCCgtaagttttcaatttctt
taccATAACTATCGTGAGAATATAATTTgggccgggtagctcagtcggta
gagcattcgccttacaatttaagggttgtgggttcgatcaccggtagctt
agattgggtaatctgatctaggcggtaagttactgggagctgagagtagg
tgtggcacTCCActtcagcattcgatctcccaggtgtagcgcaaatagaa
aaggggatagactccctcactcccggctccacCGACAGctaccagatgaa
tatacttacttgcTTACTTACTTTATCGTGAGAATCACATGTCTGCCTTT
CTCCAAGTGGAATTCTTTCGTGCATCCTTTCTCCCTGTTGAGCTGGTATT
ACAGTCACAGTTCGTAATTTGGGTTGTAAACCTTACGGTTAGCCGGTACG
AAATGATAAAATAATGTCTATATTAACGgacaaattaatttattttaaga
GCCTATGTGCCGGTTAGTAATTTACTTAAAATATCTCCAAAAACGCATAG
GTAAAAAGGGTAACGGGTATATGAGAACAGTGGAAAATGACCTTCTTTTA
GGCCCCAAAACTGTTTACTTTTCGTCTTTAACGGTTGAAATACGAATTTT
GGCTGAGACGTATCCGCTACCCTGAGTATCTCTAAACCTTggtcttcttt
cttttcaattcaCTAAAGACTGGTCTCCAATTCGCGCGAAAGGACcgaaa
actttttaacgtttttgtaaggtcattggttggttgaaaaatgaagcaat
tccattaggcaaatctgacgtaacggtttaaaaaagttgaatttctttca
actttttattttttcgctcgAAACTTTcttaatgacgtaatcttttctac
aGGCAAAAACAGTAGTAAAAAAGTTTTCGCACATTTTCACgagaaagtgg
agaccggccttaaagcTGACAAAAAATTAGATGATAAATGGTAACTGAAT
GGTAACCTGATCACAgctggtcataattttcttacgctcACGGTAAATCT
CTAAAGGCGCTTAAAAGTTAACCATTAGGATAGTATAGTACTCCCGCGGA
AAAAACTGCAACAAGAATCTTGTCACGTGTCGCGATgtcaaaaatagatt
tttttcttataggGCGCCACTATTTTTAACGCACTACTTTGTTGCCATTC
CCAGTCTTTTTTTAGTGATGCGCATCCCTTGCAAAATCGAGATAGCTTAT
TCGACAGATCGTTTGCTCTTACAcgccctttagagctttagcgtgatgtg
cagaaaacaatcacgatctgatctcaggttactgAATGAGGAAGGGAATA
AAAAATCGGCAATTGTTGTTGGCAATCTATTTTTCTAGAGGGTTACCTGA
GCCTTGGTGGATACAGCTTCTACTTGGAAAGCTCTGATGGTTCATCTGGC
CAACTGATCAAGTCTACTTCAACATCCGCGGGTGGCACTCAAAATCACAG
AGTCTTCAATTTCCCTACACTCGTCAATGGCAAGTACTCTACAAGTATGA
AAAATGTACTTTCAACAGGGTCGACTATTcgtattttgcaaaaaaacttt
ttaacaaAACAATATGTGTTTTATTGCGATCAGATTGTCAGTTTCTAACA
CAGCTTTTTCACTGATGAGCTTATTCCTACAATCGTACAAATTTTACTTC
ACTTAAGCCGTGACCATGGAGTTTTGTAGAAAAAATATAGCGAAATCGAA
ATCTTCATAACATAGTTATACTCACTAAGTAGAAATTCCACCAACtcgaa
aaaattgcattttctcCTTGCGTATTGTTTTCCCCAGCCTTGTCCCAGTA
TATTCTAGGCTTTGATTAtttatatgacgtaatctttcgcATTCAAAAAC
CAGAATACTATCTGGCGCTATAAGTTAGCATCAAAAAGGTgataacccag
ctggcacacaacgttatttcaacgttcatctaacgttatatggacgttgt
gaacgttggataaacgttgaaacaacgttgtgtgccagctgggagtaCAC
AGAGAACGACTACACTTTTTCAACCATAGCTTCCCCCAAGAAAGTTCGTG
TTCGTGTTTACGCGTCATCAACATCCAGTTTGAACAGTATCCTTTTAACC
ATTGCTTCATCACCAACGAACTACATCTACACTGGATATTCTGATGATTT
TGCACACACAACTAATTCTTGGAACAATGTAGCTTATGTTCATGCAGCTA
ATTTCATTGCTCCAATCACTGGGTATGAAAACGACTCTTATCCAGCTGgt
acataacgttgtttcaacgttcattttacgttatatggacgttgtgaacg
ttagataaacgttaaaaaaacgttgtttgccaGCTGGGTAATCTCATGTC
GAGATTTTAGACCTCTTGCACATTAGTCTACTGTATCAGACCGCTCCGAG
CTTTAGAAAGTTTAACGCACGGAGCGAgggagatatgacgtagcctactt
GCACATCTCATGTTCTATACTTGAATTGATATCAAAAAGGCGTTTTACTA
GTTATTTCTTACTTTGAGCTCGGGGAGAAGCACAAAATGTAAATTGTTTA
AAAAGGACCTCTACAGGTGCTTTTGATCGACAACTTTCATCAACTAGCAC
AAGGCAGGAATGTTTAATTACTGAAGAAGTCAAGAAATTTAGAATTAGCC
AAAGCAGTcacaaaatgctcaaaaaatatttggactTTTTAGAGGTTTTG
tctttaaataagagtgatatcgtttgcttactcatcaattttaattaaga
agctttttgatattgaattgacacggatgtggagcaggattggtcagaaa
gaggaagagaaaaacattttttttgcttaataaaACAGCACAAtgtaaca
atagggagacaatgtcccgatatgaaatatatgtctcatatgaaacggga
acacttaacaaaaataaaacctttaatgaaAAGAACACAGTAAGAAGGTG
TCTAAATATTATGTGTCCCGTCTCCACCGTCTCATTTAGATGTGAATCAT
TTTTACGTTTCTTTAGATATTATCATTTTGCACTCACGTGTACGCCATAT
TGCGCTCTCTTTCACGGAAACACTGAATcaaccaaagttgatatctttCA
CAACATTGATGCTGCCGGTACTTTCATGAGTCCTTCGTAAGTTTTGTGTT
TTCCTATAGAAAcaaatttcagaaattaaaaaataaaatttggctaaaat
cttaagaatctAATCTTAGTTTATCACAGTCTAATTGATTGTAAGAATTC
TTAGCATAATATTCAGTCTTTGTTTGAGTTTCCATAACTACACCCCcgtc
tcacagacccggtggaatttTTCAGCCATTAGGGAGTTAAGATAGCGTCG
ACTGGAATTGATATTCCAATATGTTTTAAACATTGCCAGACATtagaatt
ccattgttttcaagttagaaaatccattggggatggaaaaaggtactatt
tgtttattttattattttcagcgaTATTTTTCCAGTGAAAGAGAGAGCAC
CTAGTCTTAAAAAGGGGCTGTATAATTGGTTGTAAGTATGATAAAACCTT
TATTAATATTGATTGTCATTCATTTCTTTTCGTTAGGCGTGCTGCTGAAT
ACGGTCCTGGTTTGTATATGGAAAAAGACAAGACGTATTTCTTGGAAACA
GTCCTCCTTGATACCACCACATTTGAATTCATTGGTCTCATGATGCTGTT
GCCCGGAATCGATGATGAATGGAAACCAGTCAGTGACAAATATTTACAAA
AGATTTAAAAGAACATTATCTATTTCTCCTTGTGAATTTCGTAAATAAAT
CATACAGTGTGTCCTGAAAAAATCAGGACAGATTTTTATAaagtcccagc
tggcacacaacgttgtttcaacgtttatctaacattcacaacgtccatat
aacgttagatgaacggtgaaacaacgttgtgtgccagctgagatAGAATG
CTTAAGACTGATTATCTTACCGGAGTTTGAAACGATTGAAATTTCGCTTC
GTTTTGTCGAACAAGCTCGACTAAATATGTATCAATATCCGATTTTCCTC
ACGTCAAATATCGGCTTATTAATGTAACTTAACTTACATGATAAATTGAG
ccaaatttaatgatttttgttttgaataaaagGCTTATGCACACCACTAT
TAACTATGGTGGGTCCTCTGTGTCGTGGCATTTTTGAACCCAGAGAAAAA
TCCCCAGAACCACTTGCATgacttgttttattttcatatttatcaCTTGT
AAAGTATTAACCTGTAAATaatgatataaaaatataatattgcactgact
gaaatttaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_014687XLOC_014687Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00026119-exon-sc0000563-1491911889:51197..51470TCONS_00026119-exon-sc0000563-1491911889:51197..51470Clytia hemisphaericaexon
TCONS_00026119-exon-sc0000563-1510915933:51197..51470TCONS_00026119-exon-sc0000563-1510915933:51197..51470Clytia hemisphaericaexon
TCONS_00026119-exon-sc0000563-1575043694:51197..51470TCONS_00026119-exon-sc0000563-1575043694:51197..51470Clytia hemisphaericaexon
TCONS_00026119-exon-sc0000563-1491911889:51885..52037TCONS_00026119-exon-sc0000563-1491911889:51885..52037Clytia hemisphaericaexon
TCONS_00026119-exon-sc0000563-1510915933:51885..52037TCONS_00026119-exon-sc0000563-1510915933:51885..52037Clytia hemisphaericaexon
TCONS_00026119-exon-sc0000563-1575043694:51885..52037TCONS_00026119-exon-sc0000563-1575043694:51885..52037Clytia hemisphaericaexon
TCONS_00026119-exon-sc0000563-1491911889:52429..52728TCONS_00026119-exon-sc0000563-1491911889:52429..52728Clytia hemisphaericaexon
TCONS_00026119-exon-sc0000563-1510915933:52429..52728TCONS_00026119-exon-sc0000563-1510915933:52429..52728Clytia hemisphaericaexon
TCONS_00026119-exon-sc0000563-1575043694:52429..52728TCONS_00026119-exon-sc0000563-1575043694:52429..52728Clytia hemisphaericaexon
TCONS_00026119-exon-sc0000563-1491911889:54085..54225TCONS_00026119-exon-sc0000563-1491911889:54085..54225Clytia hemisphaericaexon
TCONS_00026119-exon-sc0000563-1510915933:54085..54225TCONS_00026119-exon-sc0000563-1510915933:54085..54225Clytia hemisphaericaexon
TCONS_00026119-exon-sc0000563-1575043694:54085..54225TCONS_00026119-exon-sc0000563-1575043694:54085..54225Clytia hemisphaericaexon
TCONS_00026119-exon-sc0000563-1491911889:54776..54968TCONS_00026119-exon-sc0000563-1491911889:54776..54968Clytia hemisphaericaexon
TCONS_00026119-exon-sc0000563-1510915933:54776..54968TCONS_00026119-exon-sc0000563-1510915933:54776..54968Clytia hemisphaericaexon
TCONS_00026119-exon-sc0000563-1575043694:54776..54968TCONS_00026119-exon-sc0000563-1575043694:54776..54968Clytia hemisphaericaexon
TCONS_00026119-exon-sc0000563-1491911889:55763..55882TCONS_00026119-exon-sc0000563-1491911889:55763..55882Clytia hemisphaericaexon
TCONS_00026119-exon-sc0000563-1510915933:55763..55882TCONS_00026119-exon-sc0000563-1510915933:55763..55882Clytia hemisphaericaexon
TCONS_00026119-exon-sc0000563-1575043694:55763..55882TCONS_00026119-exon-sc0000563-1575043694:55763..55882Clytia hemisphaericaexon
TCONS_00026119-exon-sc0000563-1491911889:56333..57055TCONS_00026119-exon-sc0000563-1491911889:56333..57055Clytia hemisphaericaexon
TCONS_00026119-exon-sc0000563-1510915933:56333..57055TCONS_00026119-exon-sc0000563-1510915933:56333..57055Clytia hemisphaericaexon
TCONS_00026119-exon-sc0000563-1575043694:56333..57055TCONS_00026119-exon-sc0000563-1575043694:56333..57055Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000563supercontigsc0000563:51197..57055 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0472629	0	0.0740215	0	0	0.0446345	0.0541882	0.100822	0.248263	0.0882006	0.276095	0.0722257	11.6474	16.5826	5.07054	3.17392	0.834363	1.32577	17.4015	15.4681	3.80844	3.4299	0.774782	1.79857	0.000240196	1.78063	0.526098	0.0613814	0.0469438	0.0241125
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00026119 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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