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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00026102 ID=TCONS_00026102|Name=TCONS_00026102|organism=Clytia hemisphaerica|type=transcript|length=1287bp AGACAATCCTCTTTTTTTATTCTTGTATAATTAAATGCTTTAGAAATGCA AAGTTGTCACTCAATGATTTGCTTGTTACATGCATTTTGACAGCTCGTCT GGAAAGTTGGGTTTTCGAGATTTCTGTTGAATATGATGTATTTTTAAAAG AGTGTATTAATTGATATTTGAGAAGATGGTATCATTCACAGATTTGgagg attttttatttgatgacACTTATTGGTGTAATAATATCGCTATATGTGTC CTATCATTTGtgctttttgttttgttctggTTAATCCATTTCTTACTTCG ATGTTTTGGAACACATGCTAAACACGTGGTTGATGAGGAACTTGTAAACA AACATGGTAGCtcaagctttgaaaaaattgtcataCCAGATTCCGAAACT GATGCCGAGATCATTTATCAATATTTGTATAAAAATTATTGGTACAAGAA ATACCCTGAAAAACCGAAACGCAAGCGTAAAATCactgaaaaagatttca ggCCAACTTTAAGGCATTTTACCAAGGATCGAGACATCCATATTATCTAC TCACGACAAACTGTATGGAGATTGGCTTTCAGTGAGAAATTAGAGTTGGG CTCGAATGAAAAATTTGCGTTTATTTTCAAAGGCCTGAAATCGTGGTCTG TGGACGAGACACAAGGCCGATTTGCAAATGTCACTGATGATTTATTGAAA TTTAGACAGGAAATTCGACAGGATTTGCTTGATCATCGAAGTCAAATCAA TCAACTGGTCGAAGACAGCAAGAAAGTTCCACCACTTAAATCCCGATACG AGGGGATCAAAGACACAAAGACTGTTATTTCCGTATGTGATTATAGCCCG GAACAGGAGGCAGTAAAGAAAGGAGAtgtttttgaattgaaaaacaATGA TGACCAATACAAATGGAAGGTATCACGTCCATCAGACGAAGAAGATTTGC AAATACCATCCGTCTGCTTTGTCATCCCTGCTCCTGACAATGATGGAGTT GAACTGGCTACCAGaaTCGAGATTCAATACAGGCATCTCTTGACATTATG GCAGAATCGCCAATGGCATTTGAAACAGACTTTATCTTCATCAGAAGTTA CCACTAACCTGAAAGTGCTGAAAACGGCTGATATTCCCAAGCTGGAACTC GGAGAGCTTGGTACAGCACTATCTAAAGATGACGTTGAAAAAATGATTCT TCAACTTGGTGAAGATCTTGATCCGACTCTTGTTTCTGACGACGAAGCAA TTGTACCTGACCTTGATTCGATTTCACAACAATTCAT Run BLAST on NCBI transcript from alignment at sc0000562:37525..44595- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00026102 ID=TCONS_00026102|Name=TCONS_00026102|organism=Clytia hemisphaerica|type=transcript|length=7071bp|location=Sequence derived from alignment at sc0000562:37525..44595- (Clytia hemisphaerica) AGACAATCCTCTTTTTTTATTCTTGTATAATTAAATGCTTTAGAAATGCA
AAGTTGTCACTCAATGATTTGCTTGTTACATGCATTTTGACAGCTCGTCT
GGAAAGTTGGGTTTTCGAGATTTCTGTTGAATATGATGTATTTTTAAAAG
AGTGTATTAATTGATATTTGAGAAGATGGTATCATTCACAGATTTGGAGG
ATTTTTTATTTGATGACACTTATTGGTGTAATAATATCGCTATATGTGTC
CTATCATTTGTGCTTTTTGTTTTGTTCTGGTTAATCCATTTCTTACTTCG
ATGTTTTGGAACACATGCTAAACACGTGGTTGATGAGGAACTTGTAAACA
AACATGGTAGCTCAAGCTTTGAAAAAATTGTCATACCAGATTCCGAAACT
GATGCCGAGATCATTTATCAATATTTGTATAAAAATTATTGGTACAAGAA
ATACCCTGAAAAACCGAAACGCAAGCGTAAAATCACTGAAAAAGATTTCA
GGCCAACTTTAAGGCATTTTACCAAGGATCGAGACATCCATATTATCTAC
TCACGACAAACTGTATGGAGATTGGCTTTCAGTGAGAAATTAGAGTTGGG
CTCGAATGAAAAATTTGCGTTTATTTTCAAAGGCCTGAAATCGTGGTCTG
TGGACGAGACACAAGGCCGATTTGCAAATGTCACTGATGATTTATTGAAA
TTTAGACAGGTAAATTCTTCTATTTTTCAAGCCCCAGACCGATTAAAAGC
TTTGTAGCCTAGCGGGAAACGTCATTTTAAATCTTTGCAGAAATTGTCTA
ATACTCGACATGAATCTGTAAACTTTTTTGATCTATAAAATCAAAAATTA
TGAATTCTCAAAATCGGCTAGCAGTTTAATACTCAGCATGGGTATAGCAT
GGTATTCAAAGAAAAACAGTTACCTTTTATTCAGCATTCAACAATTTCTA
TATTTTGTTCTGCTTTTTTTGTGTACCATGCATTATTGATGCATGATTGA
AAATGTGTTTCAATGGGTTATTATTCCGCGAAATTCTGCATATCATCTGA
TTCAGGTCACTTTTCATTTTTGCAGACCAAAAAATTCAAAAATTGTTAAA
ACTCAGGAAATAAAAAAAAAACTGTATAATTTTTGCAAGTTCATTTAACC
TAGCCTTTCAGGTTAGGGTTTTATTTTTTTTCAGTAGTAGCTTATATGCT
ACCTAAACAATATGCAAACTGACGCTTCGATAAAAATTCACACAGTACGT
TTAAACTACGTATTTCTTGAGCTTCTAACATGAAAATTAAGGCTGTTCAA
ATTTATCTTTTGTTTCATAAAGGAGTATGTCATAAAGTTGTTAAAATTAA
TCTCAAACATATTTGCAAAAGAAGAGACATAAAAAACAAGATTTTGCTAG
GTCATAAATCACATATAATTCCAGGTCAAACATTTCTTCAAATTTCCTTT
GTACAACACTGTAATCTATCTGGCAGATGAAAAGGTTATCATATGACTTT
TGAACTGCAATTTGTACATCACGCTACAAATTATCTTTGATTCTTACTTT
TCTCAGGTGTCTTTTTAAGGTCCGGCGAACGGCGAACGCCGGTCCAAACG
CCTGTCCAAAAGAAAATTACGGCCGAAATTACAATTTGCTGGTCTAAAGA
TTCGGTTCGCCGCCTCAAATACATACAGCTTGACGTTAATCAATACACTG
GGTTTGCTAAGAAATCGCTGGTCTAGAATCTAAATTTCACCGGAGCTAAT
TTTTCATTCGTCAGCCTATATTAAAAACAAAACCCTTGTTTACTGTTTCT
TTACAAAGAAACATTGAGTTTTAAATTCTCGCCTCTTGATAGCTTTTTCG
AAATTTAGCTTGCTTTTCTAGCTTTTCAAAATCGCTAGTAATAGTAAAAC
CAATCAATCCACGTAAAAGCTTACTTACTATTGCTAGTTACACCCCTTTT
TCATTCCATCCTAGAAGAAAATCAAATGGTTTAGAATCATACCCCGAACA
TCGGTTTGATGCGAGGTGTATATAGTGCGAACAATTTGATTTACTTCGAG
TTAGCCTAGGTAAAGGTGCCGAACGTGAACGAAGTCTGTATTCAAACCAC
TCATCGAGTGGTCTAGAGTTGGATTTTTATATTTTCCAAAGCAAGGAAAA
GTGAAGCCTTAAAATTTAAGCCGCATTAAGAATGACGGATTGAATCTAAT
GCATTCTTTGTTTTCACTCGGTACATTTTCCAACATCTACAATCAGGGAC
AAAATACTTGGCACAAAAGGAAAATTCACCGGGGTGTTTTGAAACCACAA
TCGATTTGTAAGTGCTCTAAAGTAGGTTCGAAGGGTAGAGTTTTAACNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNCTGAGGATCCAAAAGTTCAAAAATGGTCCAGTAG
GGCTTGAAATATAGCCTAGAAACCAATAAATCCCTCCCAGATCGAAATAC
TCGATGAAATCAAGTTGGAGGCCTAAAAATTGACATTCTCGCTCGAATTT
CAATTTTTGAAAAATTGTAAATTAGCCAAAAGTGCCAATATATTATGACA
CTGATTGTAGCGATAGATTTCACTTTCAATCCGACGTTTATGTGTAAACC
ACACGATTCCTTGCTTTGGATCACAGTCACAGATTTATAAAGCCCAAAGG
GCAAGATGCCGTGCTATAAATCTGTTCTTTGGATAGAAAATATATAAGAG
GCTTCATTTCCCGGCCAAGGGTAATCTTGATGAAGCTTCTCTTTGTCATA
GTGAGTTATTCAAAAGACAATTCGTCTCGCGTTCATATTTATTGAAACTG
AAAATGATAATTAAAGCACTGCTTTGGCGATGAATTTTAGTTAAGAGTGT
TAAATTTTTGTGTTATCACAATTTCTCATTCAATTACACTCTTCGTACTT
AATTTTTGCAATGGAAGTAGGCGAGATATTTTGTGCACGAAGCCGTTGCT
TCCTGTTATCTAACTTTATAAAAGTCATTAAAAGGTTAATTAATCATTTG
CATGAGTTATGAGCGATAATAATCTGCATTAGTTAATACTGCATAAATCA
TCAGATTGATACCATTGTTGTCTGTTGCCAATAGAAACTTTATCCAACTA
TCTCTCTTGCAAAAAAGTTGCTTGCAGCAAGAAGCAAAAAAAGGAAAATT
GATCTAGGCTGCCAATTTTGTTCCAGTACCCCTGTAAGCATCCTGAATCA
AGTATATTTGTTTTTCCACCGGGACTTCTTTTTGCAAGGTTGTGTAAGAA
ACCTCAAAAAGAATATGGGATAACGGATTTAAATCGGGTTTAATCGGGTT
TAATCAACCACGATCTTCACGTTTCATAGTTGTCTACTGAAATGCCGAAA
TAATTTATCAGTATATGTATTATCGGTACTACAAAATGAGAGCCAAACTG
TTGACTATTATTTGTTTCAGTATTAAAAAACCAATTTCCACTTTGTTAAC
TTTTTTGTCTGACATCCTAGCGGAAATTAATGCACGAATATTTCTATTTC
TATACTTCTATTCAATGAAAATTTAATTCCTACTTTAATGCTACCTATAT
TATACCCATCATTAAGGGTAATTCAGGGTACTTATTGCCTGCTTTAGTGG
GCTACTTAAAAACCTATAATAGCTTATCATCATTTTCTCCATCCTCGGTT
GTTCAATCAATGGCATTTCGGATTCGTAGCACTTTTTCTTCAAACTGATA
TTGAATTCTTTGTATATTTGAAACTAGCCCCAGTACTTATTACCCACTTA
ATCCAATGATGTTACCACGCTTCTTGCATTGAGAAAAGAGAAAGCTATAC
TTGTTCCATAAAGAAATTTCCATACTCCTTGTATTGTACATAGAGGACAT
CACATTCATTACCTTTTCTATAAAGAGAAAACTGTGTTTTGTGTGCATAG
AGGCTACTACAGTCTTGTCATTCTGTACTTAGAGTTTAATGCTCCCCAAG
TTTATTTTGTCCTTCGAGGCTATCACACCCCTTACAATGGGCTTTTCCAG
AAGAAAGATCTACCTTGAAAAGACACTTTACGCCCCTGGATATCCAATCC
CTTGTAGATGTTTAACCCCTTGGATATCCACTTTTGAGCAAAAATCGTTA
ACCCCCTGGATATCCGATATCCCCAACAGGAGGGGGCACGGACTATTTCT
GGAAAAGCCCAATTTTTCAAAAAGGTTACAGAATTCCTTGCATTTTGTGC
AGAGAGGCTACCACGCACCTAGATTCGGGGGGTTATTTCACCACTTCTAT
ATTTGTGCGGTCACCACAATTCTTGCAATTTGGTGCGTTAAGGCTATCTC
ACCCCTCACATCTGTCATCTTTTTGATGAAATGTATTTTTAGTCTTTCAT
CATGAATTTTGCCCTTTGCAAATATTCACTTTATTTTTCTCTTTCATTTC
TCAAATTAGTTAAATTTTATTGTACAACAAAAGTCTCCTCAGTTCTTACA
ATTTATAGTGTTAAGACATGAAAAAAAAACACAACTGATTTAGGGCAATC
TTTACATGCTTTAAAGTACCTCTTGTTCTTGACATTGTCCAATTGAAGTT
ATATTTGAATCTTTCTAGACATTCTTGGTAATTTTCTCTTTATCCTTTTT
CAGGAAATTCGACAGGATTTGCTTGATCATCGAAGTCAAATCAATCAACT
GGTCGAAGACAGCAAGAAAGTTCCACCACTTAAATCCCGATACGAGGGGA
TCAAAGACACAAAGACTGTTATTTCCGTATGTGATTATAGCCCGGAACAG
GTATGACGGATTCATGGATTTGGATTCTTTTTGTTCTCCTTCTCTATCGA
TACTCTTTGAATTTAATCAATTTGCATTTTGGATTCAGTTGGGTTTTATA
GAGTGTAAGCTGCAGTGTCTCTGTTAGATTTAAAATATAAAGTCGACGTA
GTCTAATTCGATTTTCAAGGAGTATAAGGGAGCGCATCAAACATTAGAGC
GTCGTTTATGAGAGTTTCTTGTCGACGATGACTTTCATTGAATATTATCG
AATAGTAGAGCGTCGTTTATGAGAGTTTGGCGGAGTTTGACTTTCTTGTC
GAATGATGGAGCATATCAAATAGTAGAACATCGAATTAGAGGGCCTCAAC
TGTACAATCAAATTGCAACATCTACATTGTAACTATAATCATCATTCCTG
CATGGCAGGCATTGCTGCTTTTACCTTTTGATTTGGATTCGAACACAGGG
ACATGTTTTTGAATTTCTCTATGCAGTTGACGCTCTTTAATTCGATTTTC
AAGGGGAATTCGATTTTCACCGAATAAGGGAACGTATCGAATTGTAGAGC
GTGTTTATGAGAGTTTCTTGTTGACGGTGACTTTTAATATTATCGAATAA
TGGAGCGTCGAATTAGAGAGCGTCAACTATACTTTAGGTGGTATTGGACA
TTTCTGGGTCTGAAAACAATTCTTTGTATTTTCTTTGTAGGAGGCAGTAA
AGAAAGGAGATGTTTTTGAATTGAAAAACAATGATGACCAATACAAATGG
AAGGTTAATAGCTATTTTGATGTCTTTTCAGGACAAACATCCCTGCATAC
ACATTTTGAAGTATACTCCAGGCTCAAACCTTAACTAAGAATGCCGAGTC
TCTGCTAATTATAACTTAAGCATAAACGAGGCTCCCAAAAATTAACACCA
TGCTTATGAATATAGACTTTTATAAGAACCTGAGGTAAAGAAAAGATCAA
TGAATGGTCACTCCGCTACAAGTTAATCAACTGCCTTTAATCTTAATTAA
AATGTTTAAAGTTTTGAATCGCGTTCATCGAGGCTAATCCAAAGAGTCAC
TTTTCTGTCTTCCATCATCATNTTTTGAAGTTCATGGAGGCTAATCTTAA
GAGTCACTTTTCGGTCTTCCATCATCAGTAAACGAGGCATCACTTTTTAA
TCATCTTGGTTCTCCTTTAGGTATCACGTCCATCAGACGAAGAAGATTTG
CAAATACCATCCGTCTGCTTTGTCATCCCTGCTCCTGACAATGATGGAGT
TGAACTGGCTACCAGGTATAATGTTAGGTTTTAAGGGTCCGGTCATCTCT
TGGAGAATTAAAACCTCTCGATGTATTTGTAAAAGAACGGCTACGAAGAA
AACAATTGACAGCGAAACAGCGAAAGACTGCCGAAAAGCCTTAGATTATC
AATCCAGGAATTTATCAACGAAAATTTTAAACTAAATCGTAAAATACCAA
TTTATTATTCTATACTCTATATTTGCGACATATTTTGTTTTTTTACAGAA
TCGAGATTCAATACAGGCATCTCTTGACATTATGGCAGAATCGCCAATGG
CATTTGAAACAGACTTTATCTTCATCAGAAGTTACCACTAACCTGAAAGT
GCTGAAAACGGCTGATATTCCCAAGGTAGGTTTGGGTATTTTTGAGACAA
TGTTATGTTAAATCCAAAGGGGGAATGTAGGGTTGTCTATTTGATGCTAA
GTTTTAGTTTCATTCTATTAGCCTCCTCTTCTTTAACTTATCTCCTACCA
TTTGCTTATACATTTTTAAACAAAAGAAAGAGCGCTGTGCGAGCACAAAT
CTTTTCTTAATGTTGCTTTGTCAGCATAAGAGGCGCACCTTTTTCTATCA
TAAGAAGAATATATCCTCTTTAAGTCACTGAGATCGAGAGAAGTCTAGTT
GAGAAAAAAGATGATTCTCTTATTCACTTCACTCACATCATGTACTTGGA
AAGTCCTTTGATATTCCGCCCCTTTTACCCAGTAAGTTGAAAATTATACA
CCTGTAAAATGTTCGCTTTTTCCAGCTGGAACTCGGAGAGCTTGGTACAG
CACTATCTAAAGATGACGTTGAAAAAATGATTCTTCAACTTGGTGAAGAT
CTTGATCCGACTCTTGTTTCTGACGACGAAGCAATTGTACCTGACCTTGA
TTCGATTTCACAACAATTCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
| TCONS_00026102-exon-sc0000562-1575043694:43887..44595 | TCONS_00026102-exon-sc0000562-1575043694:43887..44595 | Clytia hemisphaerica | exon |
| TCONS_00026102-exon-sc0000562-1575043694:39696..39842 | TCONS_00026102-exon-sc0000562-1575043694:39696..39842 | Clytia hemisphaerica | exon |
| TCONS_00026102-exon-sc0000562-1575043694:38943..39005 | TCONS_00026102-exon-sc0000562-1575043694:38943..39005 | Clytia hemisphaerica | exon |
| TCONS_00026102-exon-sc0000562-1575043694:38431..38525 | TCONS_00026102-exon-sc0000562-1575043694:38431..38525 | Clytia hemisphaerica | exon |
| TCONS_00026102-exon-sc0000562-1575043694:38071..38197 | TCONS_00026102-exon-sc0000562-1575043694:38071..38197 | Clytia hemisphaerica | exon |
| TCONS_00026102-exon-sc0000562-1575043694:37525..37670 | TCONS_00026102-exon-sc0000562-1575043694:37525..37670 | Clytia hemisphaerica | exon |
| TCONS_00026102-exon-sc0000562-1510915933:43887..44595 | TCONS_00026102-exon-sc0000562-1510915933:43887..44595 | Clytia hemisphaerica | exon |
| TCONS_00026102-exon-sc0000562-1510915933:39696..39842 | TCONS_00026102-exon-sc0000562-1510915933:39696..39842 | Clytia hemisphaerica | exon |
| TCONS_00026102-exon-sc0000562-1510915933:38943..39005 | TCONS_00026102-exon-sc0000562-1510915933:38943..39005 | Clytia hemisphaerica | exon |
| TCONS_00026102-exon-sc0000562-1510915933:38431..38525 | TCONS_00026102-exon-sc0000562-1510915933:38431..38525 | Clytia hemisphaerica | exon |
| TCONS_00026102-exon-sc0000562-1510915933:38071..38197 | TCONS_00026102-exon-sc0000562-1510915933:38071..38197 | Clytia hemisphaerica | exon |
| TCONS_00026102-exon-sc0000562-1510915933:37525..37670 | TCONS_00026102-exon-sc0000562-1510915933:37525..37670 | Clytia hemisphaerica | exon |
| TCONS_00026102-exon-sc0000562-1491911889:43887..44595 | TCONS_00026102-exon-sc0000562-1491911889:43887..44595 | Clytia hemisphaerica | exon |
| TCONS_00026102-exon-sc0000562-1491911889:39696..39842 | TCONS_00026102-exon-sc0000562-1491911889:39696..39842 | Clytia hemisphaerica | exon |
| TCONS_00026102-exon-sc0000562-1491911889:38943..39005 | TCONS_00026102-exon-sc0000562-1491911889:38943..39005 | Clytia hemisphaerica | exon |
| TCONS_00026102-exon-sc0000562-1491911889:38431..38525 | TCONS_00026102-exon-sc0000562-1491911889:38431..38525 | Clytia hemisphaerica | exon |
| TCONS_00026102-exon-sc0000562-1491911889:38071..38197 | TCONS_00026102-exon-sc0000562-1491911889:38071..38197 | Clytia hemisphaerica | exon |
| TCONS_00026102-exon-sc0000562-1491911889:37525..37670 | TCONS_00026102-exon-sc0000562-1491911889:37525..37670 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
| sc0000562 | supercontig | sc0000562:37525..44595 - |
Blast
BLAST of TCONS_00026102 vs. Swiss-Prot (Human)
Match: MACF1 (Microtubule-actin cross-linking factor 1, isoforms 1/2/3/5 OS=Homo sapiens GN=MACF1 PE=1 SV=4) HSP 1 Score: 89.3521 bits (220), Expect = 1.025e-18 Identity = 51/155 (32.90%), Postives = 91/155 (58.71%), Query Frame = 2
Query: 686 DDLLKFRQEIRQDLLDHRSQINQLVEDSKKVPPLKSRYEG--IKDTKTVISVCDYSPEQEAVKKGDVFELKNNDDQYKWKVSRPSDEEDLQIPSVCFVIPAPDNDGVELATRIEIQYRHLLTLWQNRQWHLKQTLSSSEVTTNLKVLKTADIPKL 1144
+DLL+ + ++ L+ +S + LV SK + LK R +K+T +V +VCDY + + K D L++N + KWKV P+ E + +PSVCF+IP P+ D +E+A+R+E Y+ ++ LW + K +S + + +L +++T ++ KL
Sbjct: 825 EDLLQDSMDEKEQLIQSKSSVASLVGRSKTIVQLKPRSPDHVLKNTISVKAVCDYRQIEITICKNDECVLEDNSQRTKWKVISPTGNEAM-VPSVCFLIPPPNKDAIEMASRVEQSYQKVMALWHQLHVNTKSLISWNYLRKDLDLVQTWNLEKL 978
The following BLAST results are available for this feature:
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