TCONS_00026102 (transcript) - C. hemisphaerica

Overview
NameTCONS_00026102
Unique NameTCONS_00026102
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1287

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00026102 ID=TCONS_00026102|Name=TCONS_00026102|organism=Clytia hemisphaerica|type=transcript|length=1287bp
AGACAATCCTCTTTTTTTATTCTTGTATAATTAAATGCTTTAGAAATGCA
AAGTTGTCACTCAATGATTTGCTTGTTACATGCATTTTGACAGCTCGTCT
GGAAAGTTGGGTTTTCGAGATTTCTGTTGAATATGATGTATTTTTAAAAG
AGTGTATTAATTGATATTTGAGAAGATGGTATCATTCACAGATTTGgagg
attttttatttgatgacACTTATTGGTGTAATAATATCGCTATATGTGTC
CTATCATTTGtgctttttgttttgttctggTTAATCCATTTCTTACTTCG
ATGTTTTGGAACACATGCTAAACACGTGGTTGATGAGGAACTTGTAAACA
AACATGGTAGCtcaagctttgaaaaaattgtcataCCAGATTCCGAAACT
GATGCCGAGATCATTTATCAATATTTGTATAAAAATTATTGGTACAAGAA
ATACCCTGAAAAACCGAAACGCAAGCGTAAAATCactgaaaaagatttca
ggCCAACTTTAAGGCATTTTACCAAGGATCGAGACATCCATATTATCTAC
TCACGACAAACTGTATGGAGATTGGCTTTCAGTGAGAAATTAGAGTTGGG
CTCGAATGAAAAATTTGCGTTTATTTTCAAAGGCCTGAAATCGTGGTCTG
TGGACGAGACACAAGGCCGATTTGCAAATGTCACTGATGATTTATTGAAA
TTTAGACAGGAAATTCGACAGGATTTGCTTGATCATCGAAGTCAAATCAA
TCAACTGGTCGAAGACAGCAAGAAAGTTCCACCACTTAAATCCCGATACG
AGGGGATCAAAGACACAAAGACTGTTATTTCCGTATGTGATTATAGCCCG
GAACAGGAGGCAGTAAAGAAAGGAGAtgtttttgaattgaaaaacaATGA
TGACCAATACAAATGGAAGGTATCACGTCCATCAGACGAAGAAGATTTGC
AAATACCATCCGTCTGCTTTGTCATCCCTGCTCCTGACAATGATGGAGTT
GAACTGGCTACCAGaaTCGAGATTCAATACAGGCATCTCTTGACATTATG
GCAGAATCGCCAATGGCATTTGAAACAGACTTTATCTTCATCAGAAGTTA
CCACTAACCTGAAAGTGCTGAAAACGGCTGATATTCCCAAGCTGGAACTC
GGAGAGCTTGGTACAGCACTATCTAAAGATGACGTTGAAAAAATGATTCT
TCAACTTGGTGAAGATCTTGATCCGACTCTTGTTTCTGACGACGAAGCAA
TTGTACCTGACCTTGATTCGATTTCACAACAATTCAT
Run BLAST on NCBI

transcript from alignment at sc0000562:37525..44595-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00026102 ID=TCONS_00026102|Name=TCONS_00026102|organism=Clytia hemisphaerica|type=transcript|length=7071bp|location=Sequence derived from alignment at sc0000562:37525..44595- (Clytia hemisphaerica)
AGACAATCCTCTTTTTTTATTCTTGTATAATTAAATGCTTTAGAAATGCA AAGTTGTCACTCAATGATTTGCTTGTTACATGCATTTTGACAGCTCGTCT GGAAAGTTGGGTTTTCGAGATTTCTGTTGAATATGATGTATTTTTAAAAG AGTGTATTAATTGATATTTGAGAAGATGGTATCATTCACAGATTTGGAGG ATTTTTTATTTGATGACACTTATTGGTGTAATAATATCGCTATATGTGTC CTATCATTTGTGCTTTTTGTTTTGTTCTGGTTAATCCATTTCTTACTTCG ATGTTTTGGAACACATGCTAAACACGTGGTTGATGAGGAACTTGTAAACA AACATGGTAGCTCAAGCTTTGAAAAAATTGTCATACCAGATTCCGAAACT GATGCCGAGATCATTTATCAATATTTGTATAAAAATTATTGGTACAAGAA ATACCCTGAAAAACCGAAACGCAAGCGTAAAATCACTGAAAAAGATTTCA GGCCAACTTTAAGGCATTTTACCAAGGATCGAGACATCCATATTATCTAC TCACGACAAACTGTATGGAGATTGGCTTTCAGTGAGAAATTAGAGTTGGG CTCGAATGAAAAATTTGCGTTTATTTTCAAAGGCCTGAAATCGTGGTCTG TGGACGAGACACAAGGCCGATTTGCAAATGTCACTGATGATTTATTGAAA TTTAGACAGGTAAATTCTTCTATTTTTCAAGCCCCAGACCGATTAAAAGC TTTGTAGCCTAGCGGGAAACGTCATTTTAAATCTTTGCAGAAATTGTCTA ATACTCGACATGAATCTGTAAACTTTTTTGATCTATAAAATCAAAAATTA TGAATTCTCAAAATCGGCTAGCAGTTTAATACTCAGCATGGGTATAGCAT GGTATTCAAAGAAAAACAGTTACCTTTTATTCAGCATTCAACAATTTCTA TATTTTGTTCTGCTTTTTTTGTGTACCATGCATTATTGATGCATGATTGA AAATGTGTTTCAATGGGTTATTATTCCGCGAAATTCTGCATATCATCTGA TTCAGGTCACTTTTCATTTTTGCAGACCAAAAAATTCAAAAATTGTTAAA ACTCAGGAAATAAAAAAAAAACTGTATAATTTTTGCAAGTTCATTTAACC TAGCCTTTCAGGTTAGGGTTTTATTTTTTTTCAGTAGTAGCTTATATGCT ACCTAAACAATATGCAAACTGACGCTTCGATAAAAATTCACACAGTACGT TTAAACTACGTATTTCTTGAGCTTCTAACATGAAAATTAAGGCTGTTCAA ATTTATCTTTTGTTTCATAAAGGAGTATGTCATAAAGTTGTTAAAATTAA TCTCAAACATATTTGCAAAAGAAGAGACATAAAAAACAAGATTTTGCTAG GTCATAAATCACATATAATTCCAGGTCAAACATTTCTTCAAATTTCCTTT GTACAACACTGTAATCTATCTGGCAGATGAAAAGGTTATCATATGACTTT TGAACTGCAATTTGTACATCACGCTACAAATTATCTTTGATTCTTACTTT TCTCAGGTGTCTTTTTAAGGTCCGGCGAACGGCGAACGCCGGTCCAAACG CCTGTCCAAAAGAAAATTACGGCCGAAATTACAATTTGCTGGTCTAAAGA TTCGGTTCGCCGCCTCAAATACATACAGCTTGACGTTAATCAATACACTG GGTTTGCTAAGAAATCGCTGGTCTAGAATCTAAATTTCACCGGAGCTAAT TTTTCATTCGTCAGCCTATATTAAAAACAAAACCCTTGTTTACTGTTTCT TTACAAAGAAACATTGAGTTTTAAATTCTCGCCTCTTGATAGCTTTTTCG AAATTTAGCTTGCTTTTCTAGCTTTTCAAAATCGCTAGTAATAGTAAAAC CAATCAATCCACGTAAAAGCTTACTTACTATTGCTAGTTACACCCCTTTT TCATTCCATCCTAGAAGAAAATCAAATGGTTTAGAATCATACCCCGAACA TCGGTTTGATGCGAGGTGTATATAGTGCGAACAATTTGATTTACTTCGAG TTAGCCTAGGTAAAGGTGCCGAACGTGAACGAAGTCTGTATTCAAACCAC TCATCGAGTGGTCTAGAGTTGGATTTTTATATTTTCCAAAGCAAGGAAAA GTGAAGCCTTAAAATTTAAGCCGCATTAAGAATGACGGATTGAATCTAAT GCATTCTTTGTTTTCACTCGGTACATTTTCCAACATCTACAATCAGGGAC AAAATACTTGGCACAAAAGGAAAATTCACCGGGGTGTTTTGAAACCACAA TCGATTTGTAAGTGCTCTAAAGTAGGTTCGAAGGGTAGAGTTTTAACNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNCTGAGGATCCAAAAGTTCAAAAATGGTCCAGTAG GGCTTGAAATATAGCCTAGAAACCAATAAATCCCTCCCAGATCGAAATAC TCGATGAAATCAAGTTGGAGGCCTAAAAATTGACATTCTCGCTCGAATTT CAATTTTTGAAAAATTGTAAATTAGCCAAAAGTGCCAATATATTATGACA CTGATTGTAGCGATAGATTTCACTTTCAATCCGACGTTTATGTGTAAACC ACACGATTCCTTGCTTTGGATCACAGTCACAGATTTATAAAGCCCAAAGG GCAAGATGCCGTGCTATAAATCTGTTCTTTGGATAGAAAATATATAAGAG GCTTCATTTCCCGGCCAAGGGTAATCTTGATGAAGCTTCTCTTTGTCATA GTGAGTTATTCAAAAGACAATTCGTCTCGCGTTCATATTTATTGAAACTG AAAATGATAATTAAAGCACTGCTTTGGCGATGAATTTTAGTTAAGAGTGT TAAATTTTTGTGTTATCACAATTTCTCATTCAATTACACTCTTCGTACTT AATTTTTGCAATGGAAGTAGGCGAGATATTTTGTGCACGAAGCCGTTGCT TCCTGTTATCTAACTTTATAAAAGTCATTAAAAGGTTAATTAATCATTTG CATGAGTTATGAGCGATAATAATCTGCATTAGTTAATACTGCATAAATCA TCAGATTGATACCATTGTTGTCTGTTGCCAATAGAAACTTTATCCAACTA TCTCTCTTGCAAAAAAGTTGCTTGCAGCAAGAAGCAAAAAAAGGAAAATT GATCTAGGCTGCCAATTTTGTTCCAGTACCCCTGTAAGCATCCTGAATCA AGTATATTTGTTTTTCCACCGGGACTTCTTTTTGCAAGGTTGTGTAAGAA ACCTCAAAAAGAATATGGGATAACGGATTTAAATCGGGTTTAATCGGGTT TAATCAACCACGATCTTCACGTTTCATAGTTGTCTACTGAAATGCCGAAA TAATTTATCAGTATATGTATTATCGGTACTACAAAATGAGAGCCAAACTG TTGACTATTATTTGTTTCAGTATTAAAAAACCAATTTCCACTTTGTTAAC TTTTTTGTCTGACATCCTAGCGGAAATTAATGCACGAATATTTCTATTTC TATACTTCTATTCAATGAAAATTTAATTCCTACTTTAATGCTACCTATAT TATACCCATCATTAAGGGTAATTCAGGGTACTTATTGCCTGCTTTAGTGG GCTACTTAAAAACCTATAATAGCTTATCATCATTTTCTCCATCCTCGGTT GTTCAATCAATGGCATTTCGGATTCGTAGCACTTTTTCTTCAAACTGATA TTGAATTCTTTGTATATTTGAAACTAGCCCCAGTACTTATTACCCACTTA ATCCAATGATGTTACCACGCTTCTTGCATTGAGAAAAGAGAAAGCTATAC TTGTTCCATAAAGAAATTTCCATACTCCTTGTATTGTACATAGAGGACAT CACATTCATTACCTTTTCTATAAAGAGAAAACTGTGTTTTGTGTGCATAG AGGCTACTACAGTCTTGTCATTCTGTACTTAGAGTTTAATGCTCCCCAAG TTTATTTTGTCCTTCGAGGCTATCACACCCCTTACAATGGGCTTTTCCAG AAGAAAGATCTACCTTGAAAAGACACTTTACGCCCCTGGATATCCAATCC CTTGTAGATGTTTAACCCCTTGGATATCCACTTTTGAGCAAAAATCGTTA ACCCCCTGGATATCCGATATCCCCAACAGGAGGGGGCACGGACTATTTCT GGAAAAGCCCAATTTTTCAAAAAGGTTACAGAATTCCTTGCATTTTGTGC AGAGAGGCTACCACGCACCTAGATTCGGGGGGTTATTTCACCACTTCTAT ATTTGTGCGGTCACCACAATTCTTGCAATTTGGTGCGTTAAGGCTATCTC ACCCCTCACATCTGTCATCTTTTTGATGAAATGTATTTTTAGTCTTTCAT CATGAATTTTGCCCTTTGCAAATATTCACTTTATTTTTCTCTTTCATTTC TCAAATTAGTTAAATTTTATTGTACAACAAAAGTCTCCTCAGTTCTTACA ATTTATAGTGTTAAGACATGAAAAAAAAACACAACTGATTTAGGGCAATC TTTACATGCTTTAAAGTACCTCTTGTTCTTGACATTGTCCAATTGAAGTT ATATTTGAATCTTTCTAGACATTCTTGGTAATTTTCTCTTTATCCTTTTT CAGGAAATTCGACAGGATTTGCTTGATCATCGAAGTCAAATCAATCAACT GGTCGAAGACAGCAAGAAAGTTCCACCACTTAAATCCCGATACGAGGGGA TCAAAGACACAAAGACTGTTATTTCCGTATGTGATTATAGCCCGGAACAG GTATGACGGATTCATGGATTTGGATTCTTTTTGTTCTCCTTCTCTATCGA TACTCTTTGAATTTAATCAATTTGCATTTTGGATTCAGTTGGGTTTTATA GAGTGTAAGCTGCAGTGTCTCTGTTAGATTTAAAATATAAAGTCGACGTA GTCTAATTCGATTTTCAAGGAGTATAAGGGAGCGCATCAAACATTAGAGC GTCGTTTATGAGAGTTTCTTGTCGACGATGACTTTCATTGAATATTATCG AATAGTAGAGCGTCGTTTATGAGAGTTTGGCGGAGTTTGACTTTCTTGTC GAATGATGGAGCATATCAAATAGTAGAACATCGAATTAGAGGGCCTCAAC TGTACAATCAAATTGCAACATCTACATTGTAACTATAATCATCATTCCTG CATGGCAGGCATTGCTGCTTTTACCTTTTGATTTGGATTCGAACACAGGG ACATGTTTTTGAATTTCTCTATGCAGTTGACGCTCTTTAATTCGATTTTC AAGGGGAATTCGATTTTCACCGAATAAGGGAACGTATCGAATTGTAGAGC GTGTTTATGAGAGTTTCTTGTTGACGGTGACTTTTAATATTATCGAATAA TGGAGCGTCGAATTAGAGAGCGTCAACTATACTTTAGGTGGTATTGGACA TTTCTGGGTCTGAAAACAATTCTTTGTATTTTCTTTGTAGGAGGCAGTAA AGAAAGGAGATGTTTTTGAATTGAAAAACAATGATGACCAATACAAATGG AAGGTTAATAGCTATTTTGATGTCTTTTCAGGACAAACATCCCTGCATAC ACATTTTGAAGTATACTCCAGGCTCAAACCTTAACTAAGAATGCCGAGTC TCTGCTAATTATAACTTAAGCATAAACGAGGCTCCCAAAAATTAACACCA TGCTTATGAATATAGACTTTTATAAGAACCTGAGGTAAAGAAAAGATCAA TGAATGGTCACTCCGCTACAAGTTAATCAACTGCCTTTAATCTTAATTAA AATGTTTAAAGTTTTGAATCGCGTTCATCGAGGCTAATCCAAAGAGTCAC TTTTCTGTCTTCCATCATCATNTTTTGAAGTTCATGGAGGCTAATCTTAA GAGTCACTTTTCGGTCTTCCATCATCAGTAAACGAGGCATCACTTTTTAA TCATCTTGGTTCTCCTTTAGGTATCACGTCCATCAGACGAAGAAGATTTG CAAATACCATCCGTCTGCTTTGTCATCCCTGCTCCTGACAATGATGGAGT TGAACTGGCTACCAGGTATAATGTTAGGTTTTAAGGGTCCGGTCATCTCT TGGAGAATTAAAACCTCTCGATGTATTTGTAAAAGAACGGCTACGAAGAA AACAATTGACAGCGAAACAGCGAAAGACTGCCGAAAAGCCTTAGATTATC AATCCAGGAATTTATCAACGAAAATTTTAAACTAAATCGTAAAATACCAA TTTATTATTCTATACTCTATATTTGCGACATATTTTGTTTTTTTACAGAA TCGAGATTCAATACAGGCATCTCTTGACATTATGGCAGAATCGCCAATGG CATTTGAAACAGACTTTATCTTCATCAGAAGTTACCACTAACCTGAAAGT GCTGAAAACGGCTGATATTCCCAAGGTAGGTTTGGGTATTTTTGAGACAA TGTTATGTTAAATCCAAAGGGGGAATGTAGGGTTGTCTATTTGATGCTAA GTTTTAGTTTCATTCTATTAGCCTCCTCTTCTTTAACTTATCTCCTACCA TTTGCTTATACATTTTTAAACAAAAGAAAGAGCGCTGTGCGAGCACAAAT CTTTTCTTAATGTTGCTTTGTCAGCATAAGAGGCGCACCTTTTTCTATCA TAAGAAGAATATATCCTCTTTAAGTCACTGAGATCGAGAGAAGTCTAGTT GAGAAAAAAGATGATTCTCTTATTCACTTCACTCACATCATGTACTTGGA AAGTCCTTTGATATTCCGCCCCTTTTACCCAGTAAGTTGAAAATTATACA CCTGTAAAATGTTCGCTTTTTCCAGCTGGAACTCGGAGAGCTTGGTACAG CACTATCTAAAGATGACGTTGAAAAAATGATTCTTCAACTTGGTGAAGAT CTTGATCCGACTCTTGTTTCTGACGACGAAGCAATTGTACCTGACCTTGA TTCGATTTCACAACAATTCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_014674XLOC_014674Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00026102-exon-sc0000562-1575043694:43887..44595TCONS_00026102-exon-sc0000562-1575043694:43887..44595Clytia hemisphaericaexon
TCONS_00026102-exon-sc0000562-1575043694:39696..39842TCONS_00026102-exon-sc0000562-1575043694:39696..39842Clytia hemisphaericaexon
TCONS_00026102-exon-sc0000562-1575043694:38943..39005TCONS_00026102-exon-sc0000562-1575043694:38943..39005Clytia hemisphaericaexon
TCONS_00026102-exon-sc0000562-1575043694:38431..38525TCONS_00026102-exon-sc0000562-1575043694:38431..38525Clytia hemisphaericaexon
TCONS_00026102-exon-sc0000562-1575043694:38071..38197TCONS_00026102-exon-sc0000562-1575043694:38071..38197Clytia hemisphaericaexon
TCONS_00026102-exon-sc0000562-1575043694:37525..37670TCONS_00026102-exon-sc0000562-1575043694:37525..37670Clytia hemisphaericaexon
TCONS_00026102-exon-sc0000562-1510915933:43887..44595TCONS_00026102-exon-sc0000562-1510915933:43887..44595Clytia hemisphaericaexon
TCONS_00026102-exon-sc0000562-1510915933:39696..39842TCONS_00026102-exon-sc0000562-1510915933:39696..39842Clytia hemisphaericaexon
TCONS_00026102-exon-sc0000562-1510915933:38943..39005TCONS_00026102-exon-sc0000562-1510915933:38943..39005Clytia hemisphaericaexon
TCONS_00026102-exon-sc0000562-1510915933:38431..38525TCONS_00026102-exon-sc0000562-1510915933:38431..38525Clytia hemisphaericaexon
TCONS_00026102-exon-sc0000562-1510915933:38071..38197TCONS_00026102-exon-sc0000562-1510915933:38071..38197Clytia hemisphaericaexon
TCONS_00026102-exon-sc0000562-1510915933:37525..37670TCONS_00026102-exon-sc0000562-1510915933:37525..37670Clytia hemisphaericaexon
TCONS_00026102-exon-sc0000562-1491911889:43887..44595TCONS_00026102-exon-sc0000562-1491911889:43887..44595Clytia hemisphaericaexon
TCONS_00026102-exon-sc0000562-1491911889:39696..39842TCONS_00026102-exon-sc0000562-1491911889:39696..39842Clytia hemisphaericaexon
TCONS_00026102-exon-sc0000562-1491911889:38943..39005TCONS_00026102-exon-sc0000562-1491911889:38943..39005Clytia hemisphaericaexon
TCONS_00026102-exon-sc0000562-1491911889:38431..38525TCONS_00026102-exon-sc0000562-1491911889:38431..38525Clytia hemisphaericaexon
TCONS_00026102-exon-sc0000562-1491911889:38071..38197TCONS_00026102-exon-sc0000562-1491911889:38071..38197Clytia hemisphaericaexon
TCONS_00026102-exon-sc0000562-1491911889:37525..37670TCONS_00026102-exon-sc0000562-1491911889:37525..37670Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000562supercontigsc0000562:37525..44595 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0 0 0.260842 0.0729124 0 0.0455415 0.0631589 0.0601536 0 0.137166 0.177772 0 0 0 0.0780842 0.00906952 0 0 0 0.0366091 0.0135888 0 0 0 0.0706695 0.0514214 0 0 0 0
Blast
BLAST of TCONS_00026102 vs. Swiss-Prot (Human)
Match: MACF1 (Microtubule-actin cross-linking factor 1, isoforms 1/2/3/5 OS=Homo sapiens GN=MACF1 PE=1 SV=4)

HSP 1 Score: 89.3521 bits (220), Expect = 1.025e-18
Identity = 51/155 (32.90%), Postives = 91/155 (58.71%), Query Frame = 2
Query:  686 DDLLKFRQEIRQDLLDHRSQINQLVEDSKKVPPLKSRYEG--IKDTKTVISVCDYSPEQEAVKKGDVFELKNNDDQYKWKVSRPSDEEDLQIPSVCFVIPAPDNDGVELATRIEIQYRHLLTLWQNRQWHLKQTLSSSEVTTNLKVLKTADIPKL 1144
            +DLL+   + ++ L+  +S +  LV  SK +  LK R     +K+T +V +VCDY   +  + K D   L++N  + KWKV  P+  E + +PSVCF+IP P+ D +E+A+R+E  Y+ ++ LW     + K  +S + +  +L +++T ++ KL
Sbjct:  825 EDLLQDSMDEKEQLIQSKSSVASLVGRSKTIVQLKPRSPDHVLKNTISVKAVCDYRQIEITICKNDECVLEDNSQRTKWKVISPTGNEAM-VPSVCFLIPPPNKDAIEMASRVEQSYQKVMALWHQLHVNTKSLISWNYLRKDLDLVQTWNLEKL 978          
The following BLAST results are available for this feature:
BLAST of TCONS_00026102 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
MACF11.025e-1832.90Microtubule-actin cross-linking factor 1, isoforms... [more]
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