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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00026098 ID=TCONS_00026098|Name=TCONS_00026098|organism=Clytia hemisphaerica|type=transcript|length=3419bpRun BLAST on NCBI transcript from alignment at sc0000562:126..21805- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00026098 ID=TCONS_00026098|Name=TCONS_00026098|organism=Clytia hemisphaerica|type=transcript|length=21680bp|location=Sequence derived from alignment at sc0000562:126..21805- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00026098 vs. Swiss-Prot (Human)
Match: MACF1 (Microtubule-actin cross-linking factor 1, isoforms 1/2/3/5 OS=Homo sapiens GN=MACF1 PE=1 SV=4) HSP 1 Score: 93.9745 bits (232), Expect = 4.746e-19 Identity = 157/769 (20.42%), Postives = 322/769 (41.87%), Query Frame = 1
Query: 187 LTSEDRVGIQAKLLSLELRWAKLQWECEGRNMRLQTIHDLLTDYERAIAPFMVWLQKAELQAENFNVNGIDLESVQDIYRRHQTFVKEVRKKEGDLTKVNNHGEAFLAEAKAFQKELETYLASIPDPLSSQASASSQTWVLEQKLHEINERYRKLIRTLSFKETLINESIAKHQEYLHKVQSFLPWLADAERHLAREIHEQVPSDAKRLQKKIDNVKRFHSGVQAHHNELVNIQ-IASDVLTGLEKRTSQLSSAEGKPQANVSHGTWLRTTISVMKRYEELCINVVNFESRLQSLHMTVQNFKDGLDLTYKWADATQQSMQKMTVVSYEIEILIRQVREIKIILLELEGRNSSLDS----LSKIYEQRKKDSSVVKQIERLKKIQVIFTDLHSRTDQRKIECTIS--------FKRYLSNFEEWADRTLQVLQSGELVTTDILQFEDNLQKISDDVEKNRPSFQYINQCGHELISMDRSRQTSEHLPLLDRINKKWQAIT-LQLINHTRKFDEVVKCSEK---YHSLLQPLLQWFDRMEGRVTTLAPVAIQSQVLIEQLGEQKSLLNDAYNHKGT----IEILSTIGEALVFIVYIQDKSKKDKV-------------------ERTAIEDEVSRIRARFNDIVTILESRGVNLEATLTEAEQYQTLHVDVLAWLESAEEAQRKW----SPIGNDLITLRKQYLDHQVYQRDLNNASSNVQDVLDSGRSLLENRTNARGSTQVRAQIESIEIRWETLIKKAGNRQDALE 2361
LT E++ +Q KL L+ +++ + E ++QT+ D L + + F WL+++E + EN + G E++ + +R +F ++V +GDL V G+ L +F++ E P + + +++ KL + ERY L + + +N + ++ ++ + S W+ E ++ + + + V SD LQ+++ K+ + H + +Q +A D++ EG+P + H TT S++ ++ L ++ S LQ Q+ ++ L+ + +Q+++ V S ++ + + ++ + SSL++ +++ E ++ V Q +L ++ F L Q++ E ++ F+ +++ + ++L SG DI F +Q+++ ++E + + + EL S + +H DR+ + T LQ R+ D C E+ + L++ +W EG + ++ ++ L +Q+ KSLL+D + KGT I T E L+ + D K + T I+ ++S + ++ + +L R +L+A L E+ VL WLES EE + SP + T++ Q ++ + +L S +Q V ++ LL N++ + + E + RWE + RQ LE
Sbjct: 3844 LTPEEQQMLQQKLGELKEQYSTSLAQSEAELKQVQTLQDELQKFLQDHKEFESWLERSEKELENMHKGGSSPETLPSLLKRQGSFSEDVISHKGDLRFVTISGQKVLDMENSFKEGKE------PSEIGN---------LVKDKLKDATERYTALHSKCTRLGSHLNMLLGQYHQFQNSADSLQAWMQACEANVEKLLSDTVASDPGVLQEQLATTKQLQEELAEHQVPVEKLQKVARDIM-----------EIEGEPAPDHRHVQ--ETTDSILSHFQSLSYSLAERSSLLQKAIAQSQSVQESLESLLQSIGEVEQNLEGKQVSSLSSGVIQEALATNMKLKQDIARQKSSLEATREMVTRFMETADSTTAAVLQ-GKLAEVSQRFEQLC--LQQQEKESSLKKLLPQAEMFEHLSGKLQQFMENKSRMLASGNQPDQDITHFFQQIQELNLEMEDQQENLDTLEHLVTELSSCGFALDLCQH---QDRVQNLRKDFTELQKTVKEREKD-ASSCQEQLDEFRKLVRTFQKWLKETEGSIPP-TETSMSAKELEKQIEHLKSLLDD-WASKGTLVEEINCKGTSLENLIMEITAPDSQGKTGSILPSVGSSVGSVNGYHTCKDLTEIQCDMSDVNLKYEKLGGVLHERQESLQAILNRMEEVHKEANSVLQWLESKEEVLKSMDAMSSPTKTE--TVKAQAESNKAFLAELEQNSPKIQKVKEALAGLLVTYPNSQEAENWKKIQEELNSRWERATEVTVARQRQLE 4573 HSP 2 Score: 83.1889 bits (204), Expect = 8.905e-16 Identity = 143/744 (19.22%), Postives = 290/744 (38.98%), Query Frame = 1
Query: 283 RLQTIHDLL---TDYERAIAPFMVWLQKAELQAENFNVNGIDLESVQDIYRRHQTFVKEVRKKEGDLTKVNNHGEAFLAEAKAFQKELETYLASIPDPLSSQASASSQTWVLEQKLHEINERYRKLIRTLSFKETLINESIAKHQEYLHKVQSFLPWLADAERHLAREIHEQVPSDAKRLQKKIDNVKRFHSGVQAHHNELVNIQIASDVLTGLEKRTSQLSSAEGKPQANVSHGTWLRTTISVMKR-YEELCINVVNFESRLQSLHMTVQNFKDG-----LDLTYKWADATQQSMQKMTVVSYEIEILIRQVREIKIILLEL--------EGRNSSLDSLSKIYEQRKKDSSVVKQIERLKKIQVIFTDLHSRTDQRK------IECTISFKRYLSNFEEW---ADRTLQVLQSGELVTTDILQFEDNLQKISDDVEKNRPSFQYINQCGHELISMDRSRQTSEHLPLLDRINKKWQAITLQLINHTRKFDEVVKCSEKYHSLLQPLLQWFDRMEGRVTTLAPVAIQSQVLIEQLGEQKSLLNDAYNHKGTIEILSTIGEALVFIVYIQDKSKKDKVERTAIEDEVSRIRARFNDIVTILESRGVNLEATLTEAEQYQTLHVDVLAWLESAEEAQRKWSPIGNDLITLRKQYLDHQVYQRDLNNASSNVQDVLDSGRSLLENRTNARGSTQVRAQIESIEIRWETLIKKAGNRQDALEHGF--GTRFQDEVKRITLWIDRRTQ 2430
RL+ + D + Y+ + WL ++ G DL +V+D + F EV +++ ++ K+N+ GE L +A ET I +PL+ E+ + L ++ ++ + ++ ++ H ++ + WL E L + + D K ++ ++ + V AH + + A + L L S+ G + LR+ + M + +E + E +LQS Q F L+LT M+ S L RE +EL E N LD + R S K + + ++ + + S+ ++RK + F+ L F W A+++L + L+ +L + + +++V +R ++Q G++L + + + LL + +W+ + + I R D+ K ++++H + L+ W + E + + ++ + QL + K + + G AL + + S+K +++ + +R +++ + R LE L + Q+ ++ WL E + P+ DL + H+V+Q++L + VQ + SGR L+EN + +T V+ Q++ + RW+T+ K + ++Q LE F+D V + W+ Q
Sbjct: 6104 RLEKLEDAMQAAVQYQDTLQAMFDWLDNTVIKLCTMPPVGTDLNTVKDQLNEMKEFKVEVYQQQIEMEKLNHQGELMLKKATD-----ETDRDIIREPLT-----------------ELKHLWENLGEKIAHRQHKLEGALLALGQFQHALEELMSWLTHTEELL--DAQRPISGDPKVIEVELAKHHVLKNDVLAHQATVETVNKAGNEL---------LESSAG------DDASSLRSRLEAMNQCWESVLQKTEEREQQLQSTLQQAQGFHSEIEDFLLELTR---------MESQLSASKPTGGLPETAREQLDTHMELYSQLKAKEETYNQLLDKGRLMLLSRDDSGSGSKTEQSVALLEQKWHVVSSKMEERKSKLEEALNLATEFQNSLQEFINWLTLAEQSLNIASPPSLILNTVLSQIEEHKVFANEVNAHRDQIIELDQTGNQLKFLSQKQDVVLIKNLLVSVQSRWEKVVQRSIERGRSLDDARKRAKQFHEAWKKLIDWLEDAESHLDSELEISNDPDKIKLQLSKHKEFQKTLGGKQPVYDTTIRTGRALKEKTLLPEDSQK-------LDNFLGEVRDKWDTVCGKSVERQHKLEEALLFSGQFMDALQALVDWLYKVEPQLAEDQPVHGDLDLVMNLMDAHKVFQKELGKRTGTVQVLKRSGRELIENSRD--DTTWVKGQLQELSTRWDTVCKLSVSKQSRLEQALKQAEVFRDTVHMLLEWLSEAEQ 6790 The following BLAST results are available for this feature:
BLAST of TCONS_00026098 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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