TCONS_00026093 (transcript) - C. hemisphaerica

Overview
NameTCONS_00026093
Unique NameTCONS_00026093
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length766

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00026093 ID=TCONS_00026093|Name=TCONS_00026093|organism=Clytia hemisphaerica|type=transcript|length=766bp
TAGTCAGCAAATTATTGTTACACAAATCGAAAAAATAATGTTGGCTTGAT
GATGTTATGCGAAGTCGCACTAGGAAATATGCACGAGTTGCTGCAAGCTG
ATCATATTACAAAACTACCCGCTGGAAAGCACAGTTGTAAAGGTCTTGGA
GGTACAGGTCCGGACCCTTCATCTACCAAAACCTTACCGGATGGTGTTCA
GGTACCGCTTGGAAAACCAATCAAAACTGGTGTAGATAAAAGCTCCCTAC
TTTACAATGAatatatTGTATACGACACAGCGCAAATCAGCATGAAATAC
TTGGTTCAACTAGATTTTCAATACAAGTTTTAAAGGGTACAACCAGAAGA
GGAATTCGGATAAGTATGATTCAATGTTTGTCTCCTTTTTATCAACTCGC
CCTGCAAGCAATGTTGTATTTGTTGACATATATATTGTTACGAAAGTTAC
TGGTAAAGCGGTTTATTCCTTCATTGGGAGAATCATTGGGAATAAGAAAC
TTTTCTTCTGTTAATTGTTGGACATTACAATGAACTATAAAAACGAAATA
CACTTAATTTGAGATATCTGATGAACATAGATCTGATGGTGGACATGGAC
GTTATCGCACTGAACGAAGTAATCAGAAGATGTTAAAAACGAGAAGACTT
TTTTTATGATAGGTAGAGTTTATATTGCATTTTATTCTTTATAGTGTCAG
ACTACATTAtactttttctactttttctaacatttttttgtaaagatCCT
CAACAGGGTTAACCAA
Run BLAST on NCBI

transcript from alignment at sc0000562:192730..194992+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00026093 ID=TCONS_00026093|Name=TCONS_00026093|organism=Clytia hemisphaerica|type=transcript|length=2263bp|location=Sequence derived from alignment at sc0000562:192730..194992+ (Clytia hemisphaerica)
TAGTCAGCAAATTATTGTTACACAAATCGAAAAAATAATGTTGGCTTGAT
GATGTTATGCGAAGTCGCACTAGGAAATATGTATGTTTGTAACTTCTTTT
TTTCTGGGTATATAATACTGTACTTTGAGAGGGAGAGAGGGAGTCTAACC
ATCCTAGACAAAGGACCTGGCCTAAGAAATAGAGGGAAATTTTAGTAAAC
CACGTACGTTTGCTATCCTCTGGAtaatttttagcaatttaattGCTAAC
AAATTCGATGAATTTAAAGTACGATTTGTAAATTTGTGATGTTAAAGACA
TTCTCCAGATAAGAACGTACGGACTAAACCTAACTAAACTCAGTTGGCTT
TATACATGTctttttccactaaaaaaaatttcttcgttTTTATTTAGGCA
CGAGTTGCTGCAAGCTGATCATATTACAAAACTACCCGCTGGAAAGCACA
GTTGTAAAGGTACCTATTGAAACTTTACTATTTTTCTTCTGAAACAGTTA
GATTTGTTTATTTCCCTACTATTGCAAAAATGCAAATCTGCGGATTTTGT
AATGAAATTAATCTGCTTCAGAGCGTTGAACTTTTcggaaaaactaaaaa
atgttcAGGCAATCCCTCGCGATACCAGAATAGCTTTCCACAACCGGCAT
CTTCACGGTAATGATGTTCGAAATTTGATGATTACTTTTTCTGAAATGAT
AGATGATTTAGATatgatttgaattttaaattttggtgaaaatgaatttt
ctcaaaaacagtTTTATTAATATTGTGATATTGTAAACTGACTTTATAGC
ATTTCACCGGAATATACTTTATTGTGGGTTTTTTTCAGGTCTTGGAGGTA
CAGGTCCGGACCCTTCATCTACCAAAACCTTACCGGATGGTGTTCAGGTA
CCGCTTGGAAAACCAATCAAAACTGGTGTAGATAAAAGCTCCCTACTTTA
CAATGAGTAAGCAAtcactatttttgttttgttctttaGAAGGTATAATA
ACCGCCCTGATGAAATAGCTTGATGTGATGAAATctaataatttaaaata
tattaATTTTGAATGCATGGGGGTTGGTTCACGTTTAAAAGAACATATTC
GGTTGATATTCACTATTTTCTAAACTATTGTTGGCAAAGTATCTGAATCT
ACGACTATTCAAATCTAGTATTAatagattgggctcttccaaaaaaaatc
cgttcatggggggtggaggatgaattgtccaggggtattgaaaaaatcct
gaaaaattgcaatgtccaggggNCAGGATAACATCataatttaagatttt
tttgaaatcatctTAGCTTCACATTTCGAGGAACTCTCCATAACTATTGA
TAGTCTGTTTCTGATCAAAGCCCAtggcttgaaaaaaatttttaatgatg
gttttaataatgaaaaaaataagagttATTTTAGCTCTAAAATTAGGATT
TTTGGGTTGGACAATGTCTGCGATGACTGGCTGTTATTTTGACCCCTGAA
AGCTTTTCTCGAAACAGGTAGGTACAATCAgggtcgaaatatattgggac
ttttggttaattcctcgttttcagcaatttaaagttcgggcgaaaaagtG
GCTTTTGggtaaattgataaatttattcgaatatttcaattcgggggAGG
GGTTTATttgatttcgtgggaatttcctttttttctcaaatattatgact
ttgattgtaacATTCACAATCTAGAAGTAATGagatttgaaacatttttt
ttttcagatatatTGTATACGACACAGCGCAAATCAGCATGAAATACTTG
GTTCAACTAGATTTTCAATACAAGTTTTAAAGGGTACAACCAGAAGAGGA
ATTCGGATAAGTATGATTCAATGTTTGTCTCCTTTTTATCAACTCGCCCT
GCAAGCAATGTTGTATTTGTTGACATATATATTGTTACGAAAGTTACTGG
TAAAGCGGTTTATTCCTTCATTGGGAGAATCATTGGGAATAAGAAACTTT
TCTTCTGTTAATTGTTGGACATTACAATGAACTATAAAAACGAAATACAC
TTAATTTGAGATATCTGATGAACATAGATCTGATGGTGGACATGGACGTT
ATCGCACTGAACGAAGTAATCAGAAGATGTTAAAAACGAGAAGACTTTTT
TTATGATAGGTAGAGTTTATATTGCATTTTATTCTTTATAGTGTCAGACT
ACATTAtactttttctactttttctaacatttttttgtaaagatCCTCAA
CAGGGTTAACCAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_014672XLOC_014672Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00026093-exon-sc0000562-1491911889:192730..192809TCONS_00026093-exon-sc0000562-1491911889:192730..192809Clytia hemisphaericaexon
TCONS_00026093-exon-sc0000562-1510915933:192730..192809TCONS_00026093-exon-sc0000562-1510915933:192730..192809Clytia hemisphaericaexon
TCONS_00026093-exon-sc0000562-1575043694:192730..192809TCONS_00026093-exon-sc0000562-1575043694:192730..192809Clytia hemisphaericaexon
TCONS_00026093-exon-sc0000562-1491911889:193127..193188TCONS_00026093-exon-sc0000562-1491911889:193127..193188Clytia hemisphaericaexon
TCONS_00026093-exon-sc0000562-1510915933:193127..193188TCONS_00026093-exon-sc0000562-1510915933:193127..193188Clytia hemisphaericaexon
TCONS_00026093-exon-sc0000562-1575043694:193127..193188TCONS_00026093-exon-sc0000562-1575043694:193127..193188Clytia hemisphaericaexon
TCONS_00026093-exon-sc0000562-1491911889:193568..193685TCONS_00026093-exon-sc0000562-1491911889:193568..193685Clytia hemisphaericaexon
TCONS_00026093-exon-sc0000562-1510915933:193568..193685TCONS_00026093-exon-sc0000562-1510915933:193568..193685Clytia hemisphaericaexon
TCONS_00026093-exon-sc0000562-1575043694:193568..193685TCONS_00026093-exon-sc0000562-1575043694:193568..193685Clytia hemisphaericaexon
TCONS_00026093-exon-sc0000562-1491911889:194487..194992TCONS_00026093-exon-sc0000562-1491911889:194487..194992Clytia hemisphaericaexon
TCONS_00026093-exon-sc0000562-1510915933:194487..194992TCONS_00026093-exon-sc0000562-1510915933:194487..194992Clytia hemisphaericaexon
TCONS_00026093-exon-sc0000562-1575043694:194487..194992TCONS_00026093-exon-sc0000562-1575043694:194487..194992Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000562supercontigsc0000562:192730..194992 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
50.3185	48.1368	12.3322	5.71505	8.24596	6.92332	14.0849	15.8694	10.2517	11.4352	10.9703	8.95063	7.20139	8.09461	11.7907	11.8769	14.8227	14.5066	4.8073	4.25112	11.5777	12.0753	37.7569	34.7912	18.5325	18.4929	10.2185	5.96538	24.39	30.9719
Blast
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BLAST of TCONS_00026093 vs. Swiss-Prot (Human)
Match: PARP1 (Poly [ADP-ribose] polymerase 1 OS=Homo sapiens GN=PARP1 PE=1 SV=4)

HSP 1 Score: 139.813 bits (351), Expect = 9.256e-37
Identity = 67/108 (62.04%), Postives = 87/108 (80.56%), Query Frame = 1 
Query:    4 SANYCYTNRKNNVGLMMLCEVALGNMHELLQADHITKLPAGKHSCKGLGGTGPDPSSTKTLPDGVQVPLGKPIKTGVDKSSLLYNEYIVYDTAQISMKYLVQLDFQYK 327
            SANYC+T++ + +GL++L EVALGNM+EL  A HI+KLP GKHS KGLG T PDPS+  +L DGV VPLG  I +GV+ +SLLYNEYIVYD AQ+++KYL++L F +K
Sbjct:  904 SANYCHTSQGDPIGLILLGEVALGNMYELKHASHISKLPKGKHSVKGLGKTTPDPSANISL-DGVDVPLGTGISSGVNDTSLLYNEYIVYDIAQVNLKYLLKLKFNFK 1010
The following BLAST results are available for this feature:
BLAST of TCONS_00026093 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PARP19.256e-3762.04Poly [ADP-ribose] polymerase 1 OS=Homo sapiens GN=... [more]
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