TCONS_00026087 (transcript) - C. hemisphaerica

Overview
NameTCONS_00026087
Unique NameTCONS_00026087
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2047

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00026087 ID=TCONS_00026087|Name=TCONS_00026087|organism=Clytia hemisphaerica|type=transcript|length=2047bp
CACTCTGACAAGAACAACGTGCAAACAGCACACAGAGAAGAGAAAGCTCT
ATCGAGAAGACCCACTCAGCCAATAAAGGCATCGGTAGAAAGAAGCAGGC
AAGCCAAAAGTCTTTACAATTCGACGGTGACAAGACGATGCAAGCCTAGC
TGACTACGAAAGGGTCTTCGAATACAATTTCCGTCAAACATATTGCTACA
ATTATTGATTTACATTGAGATTTTATATACCTGAAACATTTTATACAAAA
TAGTTATGGATTTAATGTGTAACGAAGGATCGGCTAGTTCGAGCGTACAA
CGAACATACTTGGACAAAAACTTGATAAAAGATGGTAGAGTTTTAGATAG
ACTGTTAAAAATTGAAGATCATTATATACCTAGATGTGACTATtttaaaa
ttgtacaaaaagaGATAAAACCTTTTATGAGGAAACTAGTTGTCACATGG
ATGTTTGAAGTTTGCGAAGAATCGAAATGTGAAGATGATGTTTTCCCGTT
GGCTGTGAACTTATTAGATAGATTTTTATCCATTGTTAGCATACGAAAAA
CACAACTACAACTACTTGGGACTTCATGTATGTTTATAGCATCAAAATTG
AAAGAGACAATACCATTGACTGCAGAAAAATTAGTTATATATACAGAcaa
ttcgataaaattggaagaATTATTGgacTGGGAAATCTTAATCTTGAACA
AACTGAGATGGGATATCGCGGCTATAGTTCCAAACGATTTTCTAGAATTC
CTCTTCTCTCGTATCACTGTACCAGAATGTCTTGAAAAAGATTACATCCT
AAAACACTGTCACACTTATATCGCTCTCTGTTGTATAGATTTCCTTTTCA
CCAACTTAAATTCTCCATCAATGATTGCAGCTGCAGCAATTTGCGCTACA
TTTCAGAATTTACGATACCAATTTGGTTCATTCTGTCCTTCAAACTATGA
ACTTATCCAAAGGTTGACCGAAATCACCGGCGTTGATGAGgattgtttgG
TTGAATGTCGACAACGAATGGATCAAGTTATAAGAACACATATGAACAAT
GATAATAATAGTAATGCGGACACTTCCAAACTAGAACAACAAAAACATTT
GGAGAATACTCCACAGCAACCTGTCACACCAACAGACATACAAGATGTCG
CTTTCTAACATCTTCTCTCTAACTCTCTCAAAAAATAAAtacctttccaa
aaaaatattaaaaatcgaaaatcaaattattatgaACAACCGAGAAATTG
TTCAAGGGACACCAATAAAAATCTACCGTTCAACACCACCTTCCATCGCC
GTTTTTGCAATTGTACCGTTTTTCTGCTTCAAATTTTTCGTAACAGATTC
GATCCAGAAAGTTCCTAGATGGATAGAAAATGACTGGAAATGCTTTCTTA
CTATAAAACATCCTTTCTTATattagttttatttatttttacacaaaaac
TGTTCAAGTTATTGTACAAACTTCTATATTTATTAACAAAAATACCTtgt
caccaaaacgaggctaattATTTCGATAccatttactttttattttaatt
ttttgactgCAAAGTTCCTAAaagattatatttttgtttgtatgtttgtt
tgtttgtatcAGTGTGTCAGTGTGTATTGTATTGTTCTTCTAACTTTGTA
AGTGTTGTCTTTTGTTcttcaatgttatttttattgtttttctttttgaa
gtgAGGGTAAATTTATATGCGTCTGGAACTTTAAACCCCAAAAAACttgt
gaatatttttaaattttaaattaacGACAAAATTCCAACGCATTTTTTTT
ACTATTGTAACTTTTTTATATCGATACGAGAAGGATTTTATTACTATTAA
ATTGACTGTTCTGTATCCCCTTCAGAAATTTATTATGGAAATTTTAGGTA
GGAAAACGAAATCTTTTTCAAAGTACAATTGTTCATATTTTATGATAGAT
TTTTATTAGTTATACTTTTTATTACTGTTCCCTACACaagtttttaaaac
aaaaacacaagataaaagcataaaatggcgAAACTCATgaaaaaact
Run BLAST on NCBI

transcript from alignment at sc0000562:113069..118808+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00026087 ID=TCONS_00026087|Name=TCONS_00026087|organism=Clytia hemisphaerica|type=transcript|length=5740bp|location=Sequence derived from alignment at sc0000562:113069..118808+ (Clytia hemisphaerica)
CACTCTGACAAGAACAACGTGCAAACAGCACACAGAGAAGAGAAAGCTCT
ATCGAGAAGACCCACTCAGCCAATAAAGGCATCGGTAGAAAGAAGCAGGC
AAGCCAAAAGTCTTTACAATTCGACGGTGACAAGACGATGCAAGCCTAGC
TGACTACGAAAGGGTCTTCGAATACAATTTCCGTCAAACATATTGCTACA
ATTATTGATTTACATTGAGATTTTATATACCTGAAACATTTTATACAAAA
TAGTTATGGATTTAATGTGTAACGAAGGATCGGCTAGTTCGAGCGTACAA
CGAACATACTTGGACAAAAACTTGATAAAAGATGGTAGAGTTTTAGATAG
ACTGTTAAAAATTGAAGATCATTATATACCTAGATGTGACTATtttaaaa
ttgtacaaaaagaGATAAAACCTTTTATGAGGAAACTAGTTGTCACATGG
ATGTTTGAAGTAAGTATTTTTACAGATATATTTTTGATCTGTTTGAATAT
TGTTACGATAAAAGTTTCTGGattctttcgaatgttttgttttggattTT
GGACGCAAATTTGGTTACCATTTTAAGCAATGCATGTGCGTGCCTGCGTG
CGTCATTtcgattcgaacgttcgaaatgtTTCACCTTGGGGTTTTCCTGG
ATGAAATTccttaaaataataatattttggGTTTTTCATATCAGGTTTGC
GAAGAATCGAAATGTGAAGATGATGTTTTCCCGTTGGCTGTGAACTTATT
AGATAGATTTTTATCCATTGTTAGCATACGAAAAACACAACTACAACTAC
TTGGGACTTCATGTATGTTTATAGCATCAAAATTGAAAGAGACAATACCA
TTGACTGCAGAAAAATTAGTTATATATACAGAcaattcgataaaattgga
agaATTATTGGTGAGTATTtatatatttaatttttttgaacattaaaaaa
agCATCAACCAATTTTGAAGACATTTCTTGAAATATCATGGCAGGCATAG
ACCCCCCTGTTTATTGTACGTTGTTGAGGTCTATTTTATCTTTCGAGGTC
TAGCANTGCTACAATTATTGATTTACATTGAGATTTTATATACCTGAAAC
ATTTTATACAAAATAGTTATGGATTTAATGTGTAACGAAGGATCGGCTAG
TTCGAGCGTACAACGAACATACTTGGACAAAAACTTGATAAAAGATGGTA
GAGTTTTAGATAGACTGTTAAAAATTGAAGATCATTATATACCTAGATGT
GACTATtttaaaattgtacaaaaagaGATAAAACCTTTTATGAGGAAACT
AGTTGTCACATGGATGTTTGAAGTAAGTATTTTTACAGATATATTTTTGA
TCTGTTTGAATATTGTTACGATAAAAGTTTCTGGattctttcgaatgttt
tgttttggattTTGGACGCAAATTTGGTTACCATTTTAAGCAATGCATGT
GCGTGCCTGCGTGCGTCATTtcgattcgaacgttcgaaatgtTTCACCTT
GGGGTTTTCCTGGATGAAATTccttaaaataataatattttggGTTTTTC
ATATCAGGTTTGCGAAGAATCGAAATGTGAAGATGATGTTTTCCCGTTGG
CTGTGAACTTATTAGATAGATTTTTATCCATTGTTAGCATACGAAAAACA
CAACTACAACTACTTGGGACTTCATGTATGTTTATAGCATCAAAATTGAA
AGAGACAATACCATTGACTGCAGAAAAATTAGTTATATATACAGAcaatt
cgataaaattggaagaATTATTGGTGAGTATTtatatatttaattttttt
gaacattaaaaaaagCATCAACCAATTTTGAAGACATTTCTTGAAATATC
ATGGCAGGCATAGACCCCCCTGTTTATTGTACGTTGTTGAGGTCTATTTT
ATCTTTCGAGGTCTAGcagaaaagttaaaaaactaaaaagttcTCCTAAT
GAGTGTGTGAAAATTCCGAAATCATTATATGCTTCTTTCTGAAGCCATTT
CAAGGATTGTTAAATAAATGAATGAGTACTCAATCAACTAAATATCGCTT
TTTTATTGCCTTCTTTGCAAATGTTTCTTTATGCCAACAATAAAATGGTC
GGCCCTGTTTTGCCTTATTTTGGATAAAGCTCTAGAGAACTTTTCCTGCA
CGTGTTTTTACTTTTCTGAATGTAAATTCGAGAAAGAGATTTTAGCTTTT
TCGGTGCCTTTTAAATTATGACGTAGTAGTTCCCATAGAAACTTTTGTTT
CAGCCTAAAGTAACAAAAGCCAAtgttgtgttttgttttgtcgcATTTAT
GTTCGAAACGTTTGgttctttttgttattttcctttgtttactttttgat
tttttaactgTTTGATTACACGGGaaaaaagctttttctgcttAGCCATC
AGTCACTGAAACTTTGGTGTTGTATTGCATATTTGACTGAAACTGGCGCC
TCTAATACCTTTGGCCTTTATTCAATTAATCTATCTCGAAAAAAGCTAAA
CGATCACTTCAGTCCGGAAAGTCGTTATAAGTTGATCATCAACATAACTT
TTGCTCTGCGTTTTTCGTCAATCCATTTTGTTGTGGTATTTTAAGAAAGT
GTTCAGAAGCAATGACACTCTAAAATTTGTCTCTACCATACTTGAAAACA
AGTTTGTTATTCTACAGGAAACTAAACGTCAAGAAAACATGATTTCATGT
AAACAAATTATGACGGACTTTTCTGAATAATTTCTCatctttgtattttt
caggacTGGGAAATCTTAATCTTGAACAAACTGAGATGGGATATCGCGGC
TATAGTTCCAAACGATTTTCTAGAATTCCTCTTCTCTCGTATCACTGTAC
CAGAATGTCTTGAAAAAGATTACATCCTAAAACACTGTCACACTTATATC
GCTCTCTGTTGTATAGGTATGTTtacttttttcctctttttagtCTTGTG
GCCATATATCTATAATGAgtttttaattgatttaaatttataatttatca
agatttgaggaaaattttaatgatttctttttcctttttcgtCATTTTAT
GTGAAATTTTAACTGCGTGACAAATTTATGAATGCTGACACGaaacaaca
aacaaaatatATTGTGCTTGCATCTCACTTTCATGGTagatttaaatttc
attaattgaATTCGCATTTTTACTCTACCTTCAGATTTCCTTTTCACCAA
CTTAAATTCTCCATCAATGATTGCAGCTGCAGCAATTTGCGCTACATTTC
AGAATTTACGATACCAATTTGGTTCATTCTGTCCTTCAAACTATGAACTT
ATCCAAAGGTTGACCGAAATCACCGGCGTTGATGAGGTACGTATTGCACG
TAGAAACATATTACTGTGACCTGTACTGGAATTCGTTAAAATTTTGCAGA
TACAGGTGATTCGATCGGTTCAAATGATTttaatcaaattattttcactc
ttaatctgtctcaattttcaatattgctGAAAAATAAATTACTGTTTTAA
TTGTGTCCAGTCGTTTTTTCTAAACCTCAATCCTACGCGCCATTTTGACG
TCACTAGATTGTGGCTGAACTGGAAAGGATGTCTATAATTTAACCTGGTT
TCTAATGAAGGAAAGTTTATAAGAAAacgaaaattctcaaatttcctTCA
AGATTTTGCCTATTTCAACATAAAATTCCAACATCTGAAATTTCCCTTTA
GAgtatttcttataaataaaatttttaatgacCTTCCTTTCTCTCtaatt
tttcaggattgtttgGTTGAATGTCGACAACGAATGGATCAAGTTATAAG
AACACATATGAACAATGATAATAATAGTANCTGTTGTATAGGTATGTTta
cttttttcctctttttagtCTTGTGGCCATATATCTATAATGAgttttta
attgatttaaatttataatttatcaagatttgaggaaaattttaatgatt
tctttttcctttttcgtCATTTTATGTGAAATTTTAACTGCGTGACAAAT
TTATGAATGCTGACACGaaacaacaaacaaaatatATTGTGCTTGCATCT
CACTTTCATGGTagatttaaatttcattaattgaATTCGCATTTTTACTC
TACCTTCAGATTTCCTTTTCACCAACTTAAATTCTCCATCAATGATTGCA
GCTGCAGCAATTTGCGCTACATTTCAGAATTTACGATACCAATTTGGTTC
ATTCTGTCCTTCAAACTATGAACTTATCCAAAGGTTGACCGAAATCACCG
GCGTTGATGAGGTACGTATTGCACGTAGAAACATATTACTGTCTGACCTG
TACTGGAATTCGTTAAAATTTTGCAGATACAGGTGATTCGATCGGTTCAA
ATGATTttaatcaaattattttcactcttaatctgtctcaattttcaata
ttgctGAAAAATAAATTACTGTTTTAATTGTGTCCAGTCGTTTTTTCTAA
ACCTCAATCCTACGCGCCATTTTGACGTCACTAGATTGTGGCTGAACTGG
AAAGGATGTCTATAATTTAACCTGGTTTCTAATGAAGGAAAGTTTATAAG
AAAacgaaaattctcaaatttcctTCAAGATTTTGCCTATTTCAACATAA
AACTCCAACATCTGAAATTTCCCTTTAGAgtatttcttataaataaaatt
tttaatgacCTTCTTTTCTCTCtaatttttcaggattgtttgGTTGAATG
TCGACAACGAATGGATCAAGTTATAAGAACACATATGAACAATGATAATA
ATAGTAATGCGGACACTTCCAAACTAGAACAACAAAAACATTTGGAGAAT
ACTCCACAGCAACCTGTCACACCAACAGACATACAAGATGTCGCTTTCTA
ACATCTTCTCTCTAACTCTCTCAAAAAATAAAtacctttccaaaaaaata
ttaaaaatcgaaaatcaaattattatgaACAACCGAGAAATTGTTCAAGG
GACACCAATAAAAATCTACCGTTCAACACCACCTTCCATCGCCGTTTTTG
CAATTGTACCGTTTTTCTGCTTCAAATTTTTCGTAACAGATTCGATCCAG
AAAGTTCCTAGATGGATAGAAAATGACTGGAAATGCTTTCTTACTATAAA
ACATCCTTTCTTATattagttttatttatttttacacaaaaacTGTTCAA
GTTATTGTACAAACTTCTATATTTATTAACAAAAATACCTtgtcaccaaa
acgaggctaattATTTCGATAccatttactttttattttaattttttgac
tgCAAAGTTCCTAAaagattatatttttgtttgtatgtttgtttgtttgt
atcAGTGTGTCAGTGTGTATTGTATTGTTCTTCTAACTTTGTAAGTGTTG
TCTTTTGTTcttcaatgttatttttattgtttttctttttgaagtgAGGG
TAAATTTATATGCGTCTGGAACTTTAAACCCCAAAAAACttgtgaatatt
tttaaattttaaattaacGACAAAATTCCAACGCATTTTTTTTACTATTG
TAACTTTTTTATATCGATACGAGAAGGATTTTATTACTATTAAATTGACT
GTTCTGTATCCCCTTCAGAAATTTATTATGGAAATTTTAGGTAGGAAAAC
GAAATCTTTTTCAAAGTACAATTGTTCATATTTTATGATAGATTTTTATT
AGTTATACTTTTTATTACTGTTCCCTACACaagtttttaaaacaaaaaca
caagataaaagcataaaatggcgAAACTCATgaaaaaact
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_014670XLOC_014670Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00026087-exon-sc0000562-1491911889:113069..113281TCONS_00026087-exon-sc0000562-1491911889:113069..113281Clytia hemisphaericaexon
TCONS_00026087-exon-sc0000562-1510915933:113069..113281TCONS_00026087-exon-sc0000562-1510915933:113069..113281Clytia hemisphaericaexon
TCONS_00026087-exon-sc0000562-1575043694:113069..113281TCONS_00026087-exon-sc0000562-1575043694:113069..113281Clytia hemisphaericaexon
TCONS_00026087-exon-sc0000562-1491911889:114145..114390TCONS_00026087-exon-sc0000562-1491911889:114145..114390Clytia hemisphaericaexon
TCONS_00026087-exon-sc0000562-1510915933:114145..114390TCONS_00026087-exon-sc0000562-1510915933:114145..114390Clytia hemisphaericaexon
TCONS_00026087-exon-sc0000562-1575043694:114145..114390TCONS_00026087-exon-sc0000562-1575043694:114145..114390Clytia hemisphaericaexon
TCONS_00026087-exon-sc0000562-1491911889:114626..114841TCONS_00026087-exon-sc0000562-1491911889:114626..114841Clytia hemisphaericaexon
TCONS_00026087-exon-sc0000562-1510915933:114626..114841TCONS_00026087-exon-sc0000562-1510915933:114626..114841Clytia hemisphaericaexon
TCONS_00026087-exon-sc0000562-1575043694:114626..114841TCONS_00026087-exon-sc0000562-1575043694:114626..114841Clytia hemisphaericaexon
TCONS_00026087-exon-sc0000562-1491911889:115822..115984TCONS_00026087-exon-sc0000562-1491911889:115822..115984Clytia hemisphaericaexon
TCONS_00026087-exon-sc0000562-1510915933:115822..115984TCONS_00026087-exon-sc0000562-1510915933:115822..115984Clytia hemisphaericaexon
TCONS_00026087-exon-sc0000562-1575043694:115822..115984TCONS_00026087-exon-sc0000562-1575043694:115822..115984Clytia hemisphaericaexon
TCONS_00026087-exon-sc0000562-1491911889:116253..116313TCONS_00026087-exon-sc0000562-1491911889:116253..116313Clytia hemisphaericaexon
TCONS_00026087-exon-sc0000562-1510915933:116253..116313TCONS_00026087-exon-sc0000562-1510915933:116253..116313Clytia hemisphaericaexon
TCONS_00026087-exon-sc0000562-1575043694:116253..116313TCONS_00026087-exon-sc0000562-1575043694:116253..116313Clytia hemisphaericaexon
TCONS_00026087-exon-sc0000562-1491911889:117239..117329TCONS_00026087-exon-sc0000562-1491911889:117239..117329Clytia hemisphaericaexon
TCONS_00026087-exon-sc0000562-1510915933:117239..117329TCONS_00026087-exon-sc0000562-1510915933:117239..117329Clytia hemisphaericaexon
TCONS_00026087-exon-sc0000562-1575043694:117239..117329TCONS_00026087-exon-sc0000562-1575043694:117239..117329Clytia hemisphaericaexon
TCONS_00026087-exon-sc0000562-1491911889:117752..118808TCONS_00026087-exon-sc0000562-1491911889:117752..118808Clytia hemisphaericaexon
TCONS_00026087-exon-sc0000562-1510915933:117752..118808TCONS_00026087-exon-sc0000562-1510915933:117752..118808Clytia hemisphaericaexon
TCONS_00026087-exon-sc0000562-1575043694:117752..118808TCONS_00026087-exon-sc0000562-1575043694:117752..118808Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000562supercontigsc0000562:113069..118808 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.000792994	0.00150859	0.124057	1.86176e-06	0.353405	0.00556755	0.00181331	0.216612	0.298634	0.119573	0	0	0	3.27844e-06	0	0	0	0	0	0	1.13914e-07	0.0432368	0	0	0	1.76907e-07
Blast
[Close]
BLAST of TCONS_00026087 vs. Swiss-Prot (Human)
Match: CCND3 (G1/S-specific cyclin-D3 OS=Homo sapiens GN=CCND3 PE=1 SV=2)

HSP 1 Score: 250.366 bits (638), Expect = 1.358e-76
Identity = 130/298 (43.62%), Postives = 190/298 (63.76%), Query Frame = 1 
Query:  256 MDLMCNEGSASSSVQRTYLDKNLIKDGRVLDRLLKIEDHYIPRCDYFKIVQKEIKPFMRKLVVTWMFEVCEESKCEDDVFPLAVNLLDRFLSIVSIRKTQLQLLGTSCMFIASKLKETIPLTAEKLVIYTDNSXXXXXXXXXXXXXXNKLRWDIAAIVPNDFLEFLFSRITVPECLEKDYILKHCHTYIALCCIDFLFTNLNSPSMIAAAAICATFQNLRYQFGSFCPSNYELIQRLTEITGVDEDCLVECRQRMDQVIRTHMNNDNNSNADTSKLEQQKHLENTPQQPVTPTDIQDV 1149
            M+L+C EG+  +   R   D  L+ D RVL  LL++E+ Y+PR  YF+ VQ+EIKP MRK++  WM EVCEE +CE++VFPLA+N LDR+LS V  RK QLQLLG  CM +ASKL+ET PLT EKL IYTD+++   +L DWE+L+L KL+WD+AA++ +DFL F+  R+++P    +  + KH  T++ALC  D+ F  +  PSMIA  +I A  Q L    G+   S  EL + L  ITG + DCL  C+++++  +R  +   + +++  +    +      P Q  TPTD+  +
Sbjct:    1 MELLCCEGTRHAP--RAGPDPRLLGDQRVLQSLLRLEERYVPRASYFQCVQREIKPHMRKMLAYWMLEVCEEQRCEEEVFPLAMNYLDRYLSCVPTRKAQLQLLGAVCMLLASKLRETTPLTIEKLCIYTDHAVSPRQLRDWEVLVLGKLKWDLAAVIAHDFLAFILHRLSLPR-DRQALVKKHAQTFLALCATDYTFA-MYPPSMIATGSIGAAVQGL----GACSMSGDELTELLAGITGTEVDCLRACQEQIEAALRESLREASQTSSSPAPKAPRGSSSQGPSQTSTPTDVTAI 290
The following BLAST results are available for this feature:
BLAST of TCONS_00026087 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CCND31.358e-7643.62G1/S-specific cyclin-D3 OS=Homo sapiens GN=CCND3 P... [more]
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