TCONS_00026065 (transcript) - C. hemisphaerica

Overview
NameTCONS_00026065
Unique NameTCONS_00026065
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length780

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00026065 ID=TCONS_00026065|Name=TCONS_00026065|organism=Clytia hemisphaerica|type=transcript|length=780bp
TCAAAAGAGATCACTGAGCTTTGCGCAACCTGATGAGATCAAAGCGACAC
TCTTGAGCGTTAAAACCAAATGACTGTGGTAAAGCAGTCTTATGTTAAAG
CAGTTAAAGACTCTCCACTAGACGACTCAAACACTTCCATTAAGGAGGTT
ATTAGAAAAGTTCTACGAGAAGAATATGCAGaagaaacaaataaacaaaa
acgtGTCTCGAATGTCATTGTACCTGAACAAGATATATCCATGAACAAGA
GCTGGGTGGATGATCTCATCAAAGAAACGAATTCAAATTTAACAGTTAAG
CGTGTTACTCGATTGGGTAAGACCTCAGCCGACAGGAAGCGTCCGACCTT
GATCTGTTTATCGAGCAAAGACGAGAAACTCAATCTTCTCGGAAATTTAC
TTGCTTTTAAAGGAAATGATAAGTTTTCTAGAGTGATCACTGAAGATCTT
TGACCTGTTTTGCGTAAGAAAGTCCACCAATTGTCTATCGAAGCTAAAGA
ATTGAATGCAACAAAATCTCCAACATCAGGAATATATCACATTCGTGGTA
ATTCAAAAAGCAGGTTCAGCATCAAGATGGTGCCAGTCAAGAACAAATCA
ACCAACAAAAAAGAATGTCTGCTTCTCCGAAAACCTAACAGAGACAAACA
TCATCAGCGAATAGGGGTAAAGACCGCTCCAAAACAAGTAATGAAAGATA
TGAAAATTCTTTATACAAGAAAAAAGAATTACAGTTAATGGCCTAGGACG
AAAAGCCATATGTAATTGCAATATGCGAAG
Run BLAST on NCBI

protein sequence of TCONS_00026065-protein

>TCONS_00026065-protein ID=TCONS_00026065-protein|Name=TCONS_00026065-protein|organism=Clytia hemisphaerica|type=polypeptide|length=127bp
MTVVKQSYVKAVKDSPLDDSNTSIKEVIRKVLREEYAEETNKQKRVSNVI
VPEQDISMNKSWVDDLIKETNSNLTVKRVTRLGKTSADRKRPTLICLSSK
DEKLNLLGNLLAFKGNDKFSRVITEDL
Run BLAST on NCBI

transcript from alignment at sc0000560:116167..116946

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00026065 ID=TCONS_00026065|Name=TCONS_00026065|organism=Clytia hemisphaerica|type=transcript|length=780bp|location=Sequence derived from alignment at sc0000560:116167..116946 (Clytia hemisphaerica)
CTTCGCATATTGCAATTACATATGGCTTTTCGTCCTAGGCCATTAACTGT
AATTCTTTTTTCTTGTATAAAGAATTTTCATATCTTTCATTACTTGTTTT
GGAGCGGTCTTTACCCCTATTCGCTGATGATGTTTGTCTCTGTTAGGTTT
TCGGAGAAGCAGACATTCTTTTTTGTTGGTTGATTTGTTCTTGACTGGCA
CCATCTTGATGCTGAACCTGCTTTTTGAATTACCACGAATGTGATATATT
CCTGATGTTGGAGATTTTGTTGCATTCAATTCTTTAGCTTCGATAGACAA
TTGGTGGACTTTCTTACGCAAAACAGGTCAAAGATCTTCAGTGATCACTC
TAGAAAACTTATCATTTCCTTTAAAAGCAAGTAAATTTCCGAGAAGATTG
AGTTTCTCGTCTTTGCTCGATAAACAGATCAAGGTCGGACGCTTCCTGTC
GGCTGAGGTCTTACCCAATCGAGTAACACGCTTAACTGTTAAATTTGAAT
TCGTTTCTTTGATGAGATCATCCACCCAGCTCTTGTTCATGGATATATCT
TGTTCAGGTACAATGACATTCGAGACacgtttttgtttatttgtttcttC
TGCATATTCTTCTCGTAGAACTTTTCTAATAACCTCCTTAATGGAAGTGT
TTGAGTCGTCTAGTGGAGAGTCTTTAACTGCTTTAACATAAGACTGCTTT
ACCACAGTCATTTGGTTTTAACGCTCAAGAGTGTCGCTTTGATCTCATCA
GGTTGCGCAAAGCTCAGTGATCTCTTTTGA

Coding sequence (CDS) from alignment at sc0000560:116167..116946

>TCONS_00026065 ID=TCONS_00026065|Name=TCONS_00026065|organism=Clytia hemisphaerica|type=CDS|length=384bp|location=Sequence derived from alignment at sc0000560:116167..116946 (Clytia hemisphaerica)
TCAAAGATCTTCAGTGATCACTCTAGAAAACTTATCATTTCCTTTAAAAG
CAAGTAAATTTCCGAGAAGATTGAGTTTCTCGTCTTTGCTCGATAAACAG
ATCAAGGTCGGACGCTTCCTGTCGGCTGAGGTCTTACCCAATCGAGTAAC
ACGCTTAACTGTTAAATTTGAATTCGTTTCTTTGATGAGATCATCCACCC
AGCTCTTGTTCATGGATATATCTTGTTCAGGTACAATGACATTCGAGACa
cgtttttgtttatttgtttcttCTGCATATTCTTCTCGTAGAACTTTTCT
AATAACCTCCTTAATGGAAGTGTTTGAGTCGTCTAGTGGAGAGTCTTTAA
CTGCTTTAACATAAGACTGCTTTACCACAGTCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_014666XLOC_014666Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00026065-proteinTCONS_00026065-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00026065-exon-sc0000560-1491911889:116167..116946TCONS_00026065-exon-sc0000560-1491911889:116167..116946Clytia hemisphaericaexon
TCONS_00026065-exon-sc0000560-1510915933:116167..116946TCONS_00026065-exon-sc0000560-1510915933:116167..116946Clytia hemisphaericaexon
TCONS_00026065-exon-sc0000560-1575043694:116167..116946TCONS_00026065-exon-sc0000560-1575043694:116167..116946Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000560supercontigsc0000560:116167..116946 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.497061	0.363535	0.351749	0.412958	0.670315	0.860749	0.639051	1.27133	0.575938	0.389123	1.00718	0.53794	0.413225	0.34331	0.0705619	0.227171	0	0.191229	0.660484	0.276459	0.300367	0.439525	0.0712401	0	1.06735	1.13119	0.0851962	0	0.0689624	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00026065 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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