TCONS_00026064 (transcript) - C. hemisphaerica

Overview
NameTCONS_00026064
Unique NameTCONS_00026064
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length832

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00026064 ID=TCONS_00026064|Name=TCONS_00026064|organism=Clytia hemisphaerica|type=transcript|length=832bp
cggccctgaCATAAATATTGTTGATACCatgttttaaaaacaatgtCCCT
ACATCAATACACTTTACATGATAATGTAGATTTTCAGTTAAAAATCAGCT
CcttttcattcttctttttctccCACCTATccaataataaaaaatttatt
tacaaagCATCCTGTAGTTGAAAGCTATCGCATTGATCCCATATAACATG
ACACAGTGTTATCATTTGAAATGTTCTACCAACCATCCACAGCAAAATAT
AATATCTCGTCATAATGACGCGCTCTCAAAACAAATGGTTCTTTTAATTC
TACTTATGTAATGGCAAACTGCTTCAAGGCATATCCTCTGTTAAGAAATT
TCGAATACTAGTCAAAAGTTCTCTTTTTACATCATCAGGGACACTGGATC
TAGCTTGTGGTGTCAATTCAGCTATAAGTGTGTCTACTGAAACGTTATCT
AGCCCACGTTCCCTGACAATATCTTTAGCATGATCTTTGAGACCGTCTTT
CCATCCACATTCGCTAAGTCGCATACGTAACCATTCTTGAAGACGTTCGC
GTTCTCCTGACTCCGTAAGACGTTGATTAATACGTTGACGAGCCAAATTA
TCGCGTCGTTGTGACATCTTTCTATtgctttgatttctttttatttgatt
ttttttgttctgAAACGATACAAGTATGCAAAATGTATAAATATCAGCTT
TGGAATTATCTAATCGAAAAAGCTAGACCATTTGAATCGTCCACAAAAGA
AGTCAGGGAAGTATCAATTTACTCTCCCACGAAATATGAAAAACCTATAA
GTTCTCAAACTATCCAACAaaatgaaatcaac
Run BLAST on NCBI

transcript from alignment at sc0000560:104325..105156

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00026064 ID=TCONS_00026064|Name=TCONS_00026064|organism=Clytia hemisphaerica|type=transcript|length=832bp|location=Sequence derived from alignment at sc0000560:104325..105156 (Clytia hemisphaerica)
gttgatttcatttTGTTGGATAGTTTGAGAACTTATAGGTTTTTCATATT
TCGTGGGAGAGTAAATTGATACTTCCCTGACTTCTTTTGTGGACGATTCA
AATGGTCTAGCTTTTTCGATTAGATAATTCCAAAGCTGATATTTATACAT
TTTGCATACTTGTATCGTTTcagaacaaaaaaaatcaaataaaaagaaat
caaagcaATAGAAAGATGTCACAACGACGCGATAATTTGGCTCGTCAACG
TATTAATCAACGTCTTACGGAGTCAGGAGAACGCGAACGTCTTCAAGAAT
GGTTACGTATGCGACTTAGCGAATGTGGATGGAAAGACGGTCTCAAAGAT
CATGCTAAAGATATTGTCAGGGAACGTGGGCTAGATAACGTTTCAGTAGA
CACACTTATAGCTGAATTGACACCACAAGCTAGATCCAGTGTCCCTGATG
ATGTAAAAAGAGAACTTTTGACTAGTATTCGAAATTTCTTAACAGAGGAT
ATGCCTTGAAGCAGTTTGCCATTACATAAGTAGAATTAAAAGAACCATTT
GTTTTGAGAGCGCGTCATTATGACGAGATATTATATTTTGCTGTGGATGG
TTGGTAGAACATTTCAAATGATAACACTGTGTCATGTTATATGGGATCAA
TGCGATAGCTTTCAACTACAGGATGctttgtaaataaattttttattatt
ggATAGGTGggagaaaaagaagaatgaaaagGAGCTGATTTTTAACTGAA
AATCTACATTATCATGTAAAGTGTATTGATGTAGGGacattgtttttaaa
acatGGTATCAACAATATTTATGtcagggccg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_014665XLOC_014665Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00026064-exon-sc0000560-1491911889:104325..105156TCONS_00026064-exon-sc0000560-1491911889:104325..105156Clytia hemisphaericaexon
TCONS_00026064-exon-sc0000560-1510915933:104325..105156TCONS_00026064-exon-sc0000560-1510915933:104325..105156Clytia hemisphaericaexon
TCONS_00026064-exon-sc0000560-1575043694:104325..105156TCONS_00026064-exon-sc0000560-1575043694:104325..105156Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000560supercontigsc0000560:104325..105156 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
101.137	99.069	114.255	120.612	44.2343	35.9862	47.2229	49.9671	39.0141	31.563	24.5779	24.3106	18.7473	18.8007	24.6725	26.7203	45.6993	35.1412	7.80908	9.56525	28.4106	27.5542	49.1663	39.7129	26.5352	25.0462	20.3021	13.0835	20.0996	22.0882
Blast
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BLAST of TCONS_00026064 vs. Swiss-Prot (Human)
Match: ENY2 (Transcription and mRNA export factor ENY2 OS=Homo sapiens GN=ENY2 PE=1 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 9.440e-32
Identity = 51/90 (56.67%), Postives = 70/90 (77.78%), Query Frame = -3 
Query:  336 RDNLARQRINQRLTESGERERLQEWLRMRLSECGWKDGLKDHAKDIVRERGLDNVSVDTLIAELTPQARSSVPDDVKRELLTSIRNFLTE 605
            +D   R  INQ+L E+GERERL+E LR +L ECGWKD LK H K++++E+GL++V+VD L+AE+TP+ R+ VPD VK+ELL  IR FL +
Sbjct:    8 KDAQMRAAINQKLIETGERERLKELLRAKLIECGWKDQLKAHCKEVIKEKGLEHVTVDDLVAEITPKGRALVPDSVKKELLQRIRTFLAQ 97
The following BLAST results are available for this feature:
BLAST of TCONS_00026064 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ENY29.440e-3256.67Transcription and mRNA export factor ENY2 OS=Homo ... [more]
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