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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00026048 ID=TCONS_00026048|Name=TCONS_00026048|organism=Clytia hemisphaerica|type=transcript|length=4486bpRun BLAST on NCBI transcript from alignment at sc0000560:119441..140527+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00026048 ID=TCONS_00026048|Name=TCONS_00026048|organism=Clytia hemisphaerica|type=transcript|length=21087bp|location=Sequence derived from alignment at sc0000560:119441..140527+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00026048 vs. Swiss-Prot (Human)
Match: ACHA9 (Neuronal acetylcholine receptor subunit alpha-9 OS=Homo sapiens GN=CHRNA9 PE=1 SV=2) HSP 1 Score: 244.202 bits (622), Expect = 2.313e-69 Identity = 147/458 (32.10%), Postives = 244/458 (53.28%), Query Frame = 1
Query: 2770 SKNGEYLLK--EDLMSQYNNEVRPVLDYNDVLKLKFEVALQQIVEVDEKRESVALSVFFRQYWKDEHLVWNASHYNDVKSTNFDPQRLWVPDVTLYNVLGDVTAGQLNLLKTRLIVNNDGEVNWFSLGLLTGMCSMNIKYFPFDTQVCKFKFGLWSYHGLLVDIQPNRMDVDTNAYTNHSEWALGSAKHVRNVQYYGCCPEPYPDVTVEVVLKRRPLFYVLNLLLPMVLIGFLTLLAFFLPAESGERVSFAVTLLLAMTVFMLIVADMVPASSETIPLLGIFFTCXXXXXXXXXXXXCYILKLYLKTPAEGETIPNWMR----------RYVYDFLAVKLG---YRKREDIAKTTDH--NGNTDQERQSLVMKEQQMLLTDIPPASGVAGNGFTNERAE------KLMEKNLHLMTKKMXXXXXXXXXXXXXXICANVLDRVAL-IFFVFMFILITVV 4071
+ +G+Y K DL Y+N +RPV D + VL + ++ L QI ++DE+ + + ++ RQ W D +L W+ Y+ + S +W PD+ LYN D ++ +N T +++ DG + W + + C +++ YFPFD Q C FG W+Y+G VDI D + + EW + V+NV YGCC EPYPDVT ++LKRR FY++NLL+P VLI FL L+F+LPA SGE+VS VT+LLAMTVF L+VA+++PA SE +PL+G ++ M ++ + ++ ++ AE +P+W R +VYD L R+R+ + K N R + +++ M + + + G + AE K++ +N+ + K ++D + +E++ A V+DR + IFF+ +F++ ++
Sbjct: 25 TADGKYAQKLFNDLFEDYSNALRPVEDTDKVLNVTLQITLSQIKDMDERNQILTAYLWIRQIWHDAYLTWDRDQYDGLDSIRIPSDLVWRPDIVLYNKADDESSEPVN---TNVVLRYDGLITWDAPAITKSSCVVDVTYFPFDNQQCNLTFGSWTYNGNQVDIFNALDSGDLSDFIEDVEWEVHGMPAVKNVISYGCCSEPYPDVTFTLLLKRRSSFYIVNLLIPCVLISFLAPLSFYLPAASGEKVSLGVTILLAMTVFQLMVAEIMPA-SENVPLIGKYYIATMALITASTALTIMVMNIHF-CGAEARPVPHWARVVILKYMSRVLFVYDVGESCLSPHHSRERDHLTKVYSKLPESNLKAARNKDLSRKKDM---NKRLKNDLGCQGKNPQEAESYCAQYKVLTRNIEYIAKCLKDHKATNSKGSEWKKVAKVIDRFFMWIFFIMVFVMTILI 474 HSP 2 Score: 223.016 bits (567), Expect = 4.456e-62 Identity = 133/425 (31.29%), Postives = 223/425 (52.47%), Query Frame = 1
Query: 10 LDLKLEIGLQQIINVNEKAEYITVSAVFRQYWNDPNLRWSPEEYGNMTDINISPHQIWIPDIVLYNNIEKSTSFGGQLDKLKNKVIIDHHGNVSWLSLGILSGKCSMDITYFPFDEQHCSLKFGLWSYHGLLVDLRPTKDHVDLALYNNHTEWDLVEANQQHNIVYYGCCTEPFPDVTAEMVIRRRPLFYVLNLLLPMILIGILTLLSFYLPAESGERVSFAVTLMLAMTVFMLIVTDMVPASSETVPILGIFFSAVMIEMVMMVLSMCYTLKLHSMLPEDGNEIGFLMRKIVFDRLSFKFGIRRMPKRRGSKLLAREEEA--------SFGGLGGSVSKGLPEFKPNSKSEKMDF---------AESSTAM--LLQKNLQVXXXXXXXXXXXXRLKFEYEVCAKTLD-YLALVVFVSLFIMITL 1224
L++ L+I L QI +++E+ + +T RQ W+D L W ++Y + I I +W PDIVLYN + +S + + V++ + G ++W + I C +D+TYFPFD Q C+L FG W+Y+G VD+ D DL+ + EW++ N++ YGCC+EP+PDVT ++++RR FY++NLL+P +LI L LSFYLPA SGE+VS VT++LAMTVF L+V +++PA SE VP++G ++ A M + + +H + + R ++ +S + + + S +RE + L + +K L K +K K D AES A +L +N++ + + + + + E++ AK +D + + F+ +F+M L
Sbjct: 56 LNVTLQITLSQIKDMDERNQILTAYLWIRQIWHDAYLTWDRDQYDGLDSIRIPSDLVWRPDIVLYNKADDESS-----EPVNTNVVLRYDGLITWDAPAITKSSCVVDVTYFPFDNQQCNLTFGSWTYNGNQVDIFNALDSGDLSDFIEDVEWEVHGMPAVKNVISYGCCSEPYPDVTFTLLLKRRSSFYIVNLLIPCVLISFLAPLSFYLPAASGEKVSLGVTILLAMTVFQLMVAEIMPA-SENVPLIGKYYIATMALITASTALTIMVMNIH-FCGAEARPVPHWARVVILKYMSRVLFVYDVGESCLSPHHSRERDHLTKVYSKLPESNLKAARNKDLSRKKDMNKRLKNDLGCQGKNPQEAESYCAQYKVLTRNIEYIAKCLKDHKATNSKGSEWKKVAKVIDRFFMWIFFIMVFVMTIL 473 HSP 3 Score: 125.561 bits (314), Expect = 8.367e-30 Identity = 60/158 (37.97%), Postives = 93/158 (58.86%), Query Frame = 2
Query: 1814 KLRQNWPADYDVDARPIRDHSQPVRVKFGVAIGQITEVNTKAETFAVNLFLRQFWKDEYLSWNVTQYGGLNSTNISPEKIWLPDIVLQNNADNESELRGNLDKLTKKVIISSDGQVKWLSIAVLQSVCPMDVTYFPFDEQNCSLKFASWTHDGLKLDI 2287
KL + DY RP+ D + + V + + QI +++ + + L++RQ W D YL+W+ QY GL+S I + +W PDIVL N AD+ES + + V++ DG + W + A+ +S C +DVTYFPFD Q C+L F SWT++G ++DI
Sbjct: 33 KLFNDLFEDYSNALRPVEDTDKVLNVTLQITLSQIKDMDERNQILTAYLWIRQIWHDAYLTWDRDQYDGLDSIRIPSDLVWRPDIVLYNKADDESS-----EPVNTNVVLRYDGLITWDAPAITKSSCVVDVTYFPFDNQQCNLTFGSWTYNGNQVDI 185 HSP 4 Score: 100.138 bits (248), Expect = 1.481e-21 Identity = 44/114 (38.60%), Postives = 69/114 (60.53%), Query Frame = 1
Query: 2314 QSVCPMDVTYFPFDEQKCSLKFASWTHDGLKIDIVPENETVDLKPYTPHSEWEMVSTVQRRTVEYYPCCDTPFPVLNIDITIRRRPLFQVIHLIVPMVLVGLLTLFSFNIPARS 2655
+S C +DVTYFPFD Q+C+L F SWT++G ++DI ++ DL + EWE+ + V Y CC P+P + + ++RR F +++L++P VL+ L SF +PA S
Sbjct: 152 KSSCVVDVTYFPFDNQQCNLTFGSWTYNGNQVDIFNALDSGDLSDFIEDVEWEVHGMPAVKNVISYGCCSEPYPDVTFTLLLKRRSSFYIVNLLIPCVLISFLAPLSFYLPAAS 265 The following BLAST results are available for this feature:
BLAST of TCONS_00026048 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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