TCONS_00026044 (transcript) - C. hemisphaerica

Overview
NameTCONS_00026044
Unique NameTCONS_00026044
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1743

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00026044 ID=TCONS_00026044|Name=TCONS_00026044|organism=Clytia hemisphaerica|type=transcript|length=1743bp
CGCCTCCCTCTGGATTTGAAACTTGAAATCGGTTTGCAACAAATCATCAA
TGTTAATGAGAAGGCAGAATATATTACGGTCAGTGCCGTCTTTCGGCAAT
ATTGGAACGATCCAAACTTGCGTTGGTCGCCTGAagaatatggaaatatg
acggACATCAACATCAGTCCACATCAAATCTGGATACCTGATATTGTTCT
TTATAACAACATTGAGAAGTCGACATCTTTTGGTGGTCAGTTGGACAAGT
TGAAGAACAAAGTGATCATCGATCACCATGGTAACGTGTCCTGGCTTTCG
TTGGGAATATTGAGTGGTAAATGCTCCATGGATATTACTTACTTCCCTTT
TGATGAACAACATTGCTCCTTGAAGTTCGGATTGTGGTCTTACCATGGCC
TTCTCGTCGACTTGAGACCTACTAAAGATCATGTGGATTTAGCATTATAC
AACAACCACACAGAGTGGGATTTAGTTGAAGCTAATCAACAACATAACAT
TGTATATTATGGATGCTGTACAGAACCTTTTCCTGATGTCACAGCTGAGA
TGGTCATCCGTAGGCGCCCACTGTTTTACGTCTTGAATTTGCTTCTTCCA
ATGATCTTGATCGGTATTTTGACGCTCCTTTCTTTTTATCTACCAGCTGA
GTCAGTATTGCAATTCCTTAGTACAGATATGGGATTCTATTGGTGGAATG
TTTATTTCGGTTTATTCAATGCATCGTTCACTTTTCAATTAAAAGGAGGT
TGGTATCATTATCAAAGAGGAGGAGTTTTTTTAATCCATTTAAAGAATAA
TCACTTGAGATCATTATATAGTCATTTTTAATTGATATCCTCACTCTGCA
AGGTACCTCTATTGAAACATTAATCCATATCAATTTCTTATTTCCTCTAT
AAGAATGAGCTTTTATTGGGTCGTTTGGATAAACTTTGGATCATATTTTG
GTCGAAGGATCACAATATGTATCATACTTACTCCATGGTAGATTAAAGTA
GTCGTTCAGCCATCCTTGATTCGGCTCGCTCAATATGAAGTTCAACAAAT
GATTAAAACTTCCAagctaaattttcagtttttatgtaaatttgttcatc
ttttgatttaaaaaatttttgattctcCCTTTCCTAGCTATGTAAAAggt
tttagtccaaatattttgtttgttaACGAAGTGACATATTGAAATTCTTG
ATTCATAAAAGTGTTGTCTTCAAGCGCGTGGAAAGTAATTTTGTAGAATA
TGAGAAATCAACCTCTGTGTTAGAATGTGTTTAGTGGCCCGAAGAAAATG
TAACTTCTAACATCATTTTTTTATGCTCCCTTTCAGGAGAGCGTGTTTCG
TTCGCGGTGACCTTGATGTTGGCGATGACAGTGTTCATGCTGATCGTCAC
CGACATGGTACCGGCGTCTTCGGAGACTGTCCCCATCCTCGGTATCTTCT
TCTCTGCCGTCATGATCGAAATGGTGATGATGGTGTTATCAATGTGTTAT
ACACTGAAACTGCATTCCATGCTTCCCGAGGATGGCAATGAAATCggttt
tttgatgagaaaaatcGTCTTCGATCGATTATCCTTCAAATTTGGCATAC
GTAGGATGCCTAAGAGAAGAGGTAGTAAATTATTGGCGAGAGAAGAAGAG
GCTAGTTTTGGTGGCCTCGGTGGATCTGTTAGCAAAGGTCTACCTGAATT
CAAACCAAACTCTAAGAGCGAGAAGATGgattttgctgagtca
Run BLAST on NCBI

transcript from alignment at sc0000560:119441..123313+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00026044 ID=TCONS_00026044|Name=TCONS_00026044|organism=Clytia hemisphaerica|type=transcript|length=3873bp|location=Sequence derived from alignment at sc0000560:119441..123313+ (Clytia hemisphaerica)
CGCCTCCCTCTGGATTTGAAACTTGAAATCGGTTTGCAACAAATCATCAA
TGTTGTAAGTTGCATTTTCATAGATTCTTCTACATTATGATAATGACTCC
AGGTTTCAGTGATTAGGAGGCGTGGCGTGACAAACTAATTACTTCTTCCG
TACTTAACACCATTTCTATTGAACGTATTTTGGAGAGAAGGAGAATACTT
TCCGCTCATTTTCCTTCATTCTTAACCAGTGACTCAATACCTTACTCAAT
ACTTGTCGAACGTGCGGTTTTAAGTGTCGtgtcaaattaaatttaataAC
TATAAGAAATTGATAATGTAATACACAAGGCTACCTTTCTTCTAATTCAT
GACATCATCATTACTCTGTTATTAGTCAGTCATTACGCATTGCAAGCATC
ACAATAGGATCACATGCTTTTCTCATAATCGATATTCTTCCATCGTCATC
AAACTTATTTTCAATGATATGAAATTTATAAAAtgtattaatacaataat
gaccggttagtgagggatGTACTGATAAATATTGCCCGAGTTCAAGTAAC
tctatataatataataatgCTTGTGGTATTACCATAAAGACAATATTTGC
ACAAGATTAGACCAACGTTATACGTGCCATAGTGACCGCAAGATCAACAG
AGAGAAAAATGATTGAATCTATAAGAAAAAGTTAGTATACGGTGATAGTA
ATGCGCTAAAAGTTAAATTATAAGACATGTTCTCTTTTGACTGTCCACTT
AATCGACAGATGATCAGTTTGATTGTTATTCTTTCTGCGTCTGATCATGA
GGACAAAGTTCTGTTGTGTTAAAGAAACTTTACATATTTTTATTTCGTTA
GAATGAGAAGGCAGAATATATTACGGTCAGTGCCGTCTTTCGGCAATATT
GGAACGATCCAAACTTGCGTTGGTCGCCTGAagaatatggaaatatgacg
gACATCAACATCAGTCCACATCAAATCTGGATACCTGATATTGTTCTTTA
TAACAAGTTggttgattttattttcaaatttttgattagAATTATAGAAT
TTGATCTTTGGAGGTCTGCTACGAGGGGACGATATCAATCCAAAATACAA
TTTCTTGATTTAATCCTTACAAATTGCTAGTGTCAGCTAGTGGCCTATAG
AATGTAACTTTTTAGCGGTGTTATCGGAACTTTATTTGACACAAAGTTTT
GCAATGTAAAGTCTCTTTTCAGTTcatctaccgggtgcaccaaaattcaa
gcatcctctatacgataaaaaaagaatgaacaaaaaacttaaatcacaaa
cctgtatactttttttggtgcacccggtagatgAACTGAAATTTTCGATC
AAAGTTTAAAGAACCAATTTTATATGGTTTTCATTCTTCTTCTTTATTAT
TAAGCATTGAGAAGTCGACATCTTTTGGTGGTCAGTTGGACAAGTTGAAG
AACAAAGTGATCATCGATCACCATGGTAACGTGTCCTGGCTTTCGTTGGG
AATATTGAGTGGTAAATGCTCCATGGATATTACTTACTTCCCTTTTGATG
AACAACATTGCTCCTTGAAGTTCGGATTGTGGTCTTACCATGGCCTTCTC
GTCGACTTGAGACCTACTAAAGATCATGTGGATTTAGGTATGACGTTTAA
GTTCATTCCAGCCCATCCCATTCCTAACAAACTCAAGATACCTTTCCTTA
ATTCTGTACAGTAGAATTTGATTAAATACTCGGTTTGTTGACTTCACAGC
GCTGTCTTTCTCTTTACACAGCATTATACAACAACCACACAGAGTGGGAT
TTAGTTGAAGCTAATCAACAACATAACATTGTATATTATGGATGCTGTAC
AGAACCTTTTCCTGATGTCACAGCTGAGATGGTCATCCGTAGGCGCCCAC
TGTTTTACGTCTTGAATTTGCTTCTTCCAATGATCTTGATCGGTATTTTG
ACGCTCCTTTCTTTTTATCTACCAGCTGAGTCAGGTAAGATGATTTACTC
TTTACTTTATATAAAGCTCTAAAACGATTCGCCTCCTCAAGATGTGGCCG
CGAAACACTTTGCAGAGGTAAACAGTCTTACAAAATACCCAATATTGAAA
CCAAAAGAGCCTTTCTCTTTATGCGCCAATATATATCTAGGGttggaatt
tttcttcttttttaaacaCGTTTCATCAAATATCATGAGCCCAATATTTC
CTTTTCTCGCAATTGCAGGGATTGTTTCGGTGATTTTCTTTCTAGTATTG
CAATTCCTTAGTACAGATATGGGATTCTATTGGTGGAATGTTTATTTCGG
TTTATTCAATGCATCGTTCACTTTTCAATTAAAAGGAGGTTGGTATCATT
ATCAAAGAGGAGGAGTTTTTTTAATCCATTTAAAGAATAATCACTTGAGA
TCATTATATAGTCATTTTTAATTGATATCCTCACTCTGCAAGGTACCTCT
ATTGAAACATTAATCCATATCAATTTCTTATTTCCTCTATAAGAATGAGC
TTTTATTGGGTCGTTTGGATAAACTTTGGATCATATTTTGGTCGAAGGAT
CACAATATGTATCATACTTACTCCATGGTAGATTAAAGTAGTCGTTCAGC
CATCCTTGATTCGGCTCGCTCAATATGAAGTTCAACAAATGATTAAAACT
TCCAagctaaattttcagtttttatgtaaatttgttcatcttttgattta
aaaaatttttgattctcCCTTTCCTAGCTATGTAAAAggttttagtccaa
atattttgtttgttaACGAAGTGACATATTGAAATTCTTGATTCATAAAA
GTGTTGTCTTCAAGCGCGTGGAAAGTAATTTTGTAGAATATGAGAAATCA
ACCTCTGTGTTAGAATGTGTTTAGTGGCCCGAAGAAAATGTAACTTCTAA
CATCATTTTTTTATGCTCCCTTTCAGGAGAGCGTGTTTCGTTCGCGGTGA
CCTTGATGTTGGCGATGACAGTGTTCATGCTGATCGTCACCGACATGGTA
CCGGCGTCTTCGGAGACTGTCCCCATCCTCGGTATCTTCTTCTCTGCCGT
CATGATCGAAATGGTAAGCACTCTCACAGGGGGTTTCTTTGTTATCTTGC
AAGTATTTATTACTTCCTATCTTAGAGTTTGGGAAAACCAGCTATTTTTT
TACGTATGAGTTACAGTTACAGCCTAATTCTGAGAAGAAGTCTCGCTTAC
ATCATACTTTGAAAATGTCGAAACTATGTGTAGGCCTGTGATCTGTATAG
TGTAGTTACTGTTTGCTTCTACTTAGGTGATGATGGTGTTATCAATGTGT
TATACACTGAAACTGCATTCCATGCTTCCCGAGGATGGCAATGAAATCgg
ttttttgatgagaaaaatcGTCTTCGATCGATTATCCTTCAAATTTGGCA
TACGTAGGATGCCTAAGAGAAGAGGTAGTAAATTATTGGCGAGAGAAGAA
GAGGCTAGTTTTGGTGGCCTCGGTGGATCTGTTAGCAAAGGTAAAATGGT
TATAGGTTTGCACTTTCTTGTTATTGGTCCAATCTTACTTTGATACTCCA
CGACTTTCAGTCTGAAGATGCTTGCTTTGCCAGTTACAAAGTCAAACTAA
AAGCTTCCTATCTTCCTCTTGTGAATTTTGATTATGGAAAGGAAAGTTTT
TCCAGTTAAGTTCTGTCATTAGTTCATTTTTATCAGAAATTCCGTCAGCC
CTTCTTTCTCTATTGGTCATTCTGATACAGAGAGTAGATTCCGAAAATCG
AAGCGCGATTTTCTATTCATCCATTTCGAGATTCGTTTGTCCAATGAATC
TGTTACGTATTTTCTAGGTCTACCTGAATTCAAACCAAACTCTAAGAGCG
AGAAGATGgattttgctgagtca
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_014656XLOC_014656Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00026044-exon-sc0000560-1491911889:119441..119494TCONS_00026044-exon-sc0000560-1491911889:119441..119494Clytia hemisphaericaexon
TCONS_00026044-exon-sc0000560-1510915933:119441..119494TCONS_00026044-exon-sc0000560-1510915933:119441..119494Clytia hemisphaericaexon
TCONS_00026044-exon-sc0000560-1575043694:119441..119494TCONS_00026044-exon-sc0000560-1575043694:119441..119494Clytia hemisphaericaexon
TCONS_00026044-exon-sc0000560-1491911889:120292..120446TCONS_00026044-exon-sc0000560-1491911889:120292..120446Clytia hemisphaericaexon
TCONS_00026044-exon-sc0000560-1510915933:120292..120446TCONS_00026044-exon-sc0000560-1510915933:120292..120446Clytia hemisphaericaexon
TCONS_00026044-exon-sc0000560-1575043694:120292..120446TCONS_00026044-exon-sc0000560-1575043694:120292..120446Clytia hemisphaericaexon
TCONS_00026044-exon-sc0000560-1491911889:120845..121077TCONS_00026044-exon-sc0000560-1491911889:120845..121077Clytia hemisphaericaexon
TCONS_00026044-exon-sc0000560-1510915933:120845..121077TCONS_00026044-exon-sc0000560-1510915933:120845..121077Clytia hemisphaericaexon
TCONS_00026044-exon-sc0000560-1575043694:120845..121077TCONS_00026044-exon-sc0000560-1575043694:120845..121077Clytia hemisphaericaexon
TCONS_00026044-exon-sc0000560-1491911889:121212..121424TCONS_00026044-exon-sc0000560-1491911889:121212..121424Clytia hemisphaericaexon
TCONS_00026044-exon-sc0000560-1510915933:121212..121424TCONS_00026044-exon-sc0000560-1510915933:121212..121424Clytia hemisphaericaexon
TCONS_00026044-exon-sc0000560-1575043694:121212..121424TCONS_00026044-exon-sc0000560-1575043694:121212..121424Clytia hemisphaericaexon
TCONS_00026044-exon-sc0000560-1491911889:121686..122503TCONS_00026044-exon-sc0000560-1491911889:121686..122503Clytia hemisphaericaexon
TCONS_00026044-exon-sc0000560-1510915933:121686..122503TCONS_00026044-exon-sc0000560-1510915933:121686..122503Clytia hemisphaericaexon
TCONS_00026044-exon-sc0000560-1575043694:121686..122503TCONS_00026044-exon-sc0000560-1575043694:121686..122503Clytia hemisphaericaexon
TCONS_00026044-exon-sc0000560-1491911889:122717..122930TCONS_00026044-exon-sc0000560-1491911889:122717..122930Clytia hemisphaericaexon
TCONS_00026044-exon-sc0000560-1510915933:122717..122930TCONS_00026044-exon-sc0000560-1510915933:122717..122930Clytia hemisphaericaexon
TCONS_00026044-exon-sc0000560-1575043694:122717..122930TCONS_00026044-exon-sc0000560-1575043694:122717..122930Clytia hemisphaericaexon
TCONS_00026044-exon-sc0000560-1491911889:123258..123313TCONS_00026044-exon-sc0000560-1491911889:123258..123313Clytia hemisphaericaexon
TCONS_00026044-exon-sc0000560-1510915933:123258..123313TCONS_00026044-exon-sc0000560-1510915933:123258..123313Clytia hemisphaericaexon
TCONS_00026044-exon-sc0000560-1575043694:123258..123313TCONS_00026044-exon-sc0000560-1575043694:123258..123313Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000560supercontigsc0000560:119441..123313 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0752415	0.0400864	0.320152	0	0	0	0.176966	0.61141	0.276195	0.139755	1.17805	0.47874	1.74061	2.07807	2.73022	4.48623	0	0	0.484863	0.744788	0.0463297	0.200725	0	0	0	0	0	0	0	0
Blast
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BLAST of TCONS_00026044 vs. Swiss-Prot (Human)
Match: ACH10 (Neuronal acetylcholine receptor subunit alpha-10 OS=Homo sapiens GN=CHRNA10 PE=1 SV=1)

HSP 1 Score: 182.956 bits (463), Expect = 1.212e-50
Identity = 85/215 (39.53%), Postives = 124/215 (57.67%), Query Frame = 1 
Query:   10 LDLKLEIGLQQIINVNEKAEYITVSAVFRQYWNDPNLRWSPEEYGNMTDINISPHQIWIPDIVLYNNIEKSTSFGGQLDKLKNKVIIDHHGNVSWLSLGILSGKCSMDITYFPFDEQHCSLKFGLWSYHGLLVDLRPTKDHVDLALYNNHTEWDLVEANQQHNIVYYGCCTEPFPDVTAEMVIRRRPLFYVLNLLLPMILIGILTLLSFYLPAES 654
            L++ LE+ L QII+++E+ + +T+    RQ W D  LRW P  YG +  I I    +W PDIVLYN  +               V++ H G V W +  I    C +D+  FPFD QHC L FG W++ G  +D+RP      LA +  + EW ++    +  ++ YGCC+EP+PDVT  +++RRR   YV NLLLP +LI +L  L+F+LPA+S
Sbjct:   55 LNVTLEVTLSQIIDMDERNQVLTLYLWIRQEWTDAYLRWDPNAYGGLDAIRIPSSLVWRPDIVLYNKADAQPP-----GSASTNVVLRHDGAVRWDAPAITRSSCRVDVAAFPFDAQHCGLTFGSWTHGGHQLDVRPRGAAASLADFVENVEWRVLGMPARRRVLTYGCCSEPYPDVTFTLLLRRRAAAYVCNLLLPCVLISLLAPLAFHLPADS 264
The following BLAST results are available for this feature:
BLAST of TCONS_00026044 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ACH101.212e-5039.53Neuronal acetylcholine receptor subunit alpha-10 O... [more]
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