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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00026040 ID=TCONS_00026040|Name=TCONS_00026040|organism=Clytia hemisphaerica|type=transcript|length=1057bp
GTTCTTTGTGATTTCTCcctaaaatattttatgaaattatgGTAGAAACA
CTAAAACCATAAAAGTTCAcaacaaaattgaaagaaaggAGAAGTTTGGT
TTACCTTCTTGTATATTAATTTTGGTCTAGATTTGATCGAAACCTGTCAT
TTTCATTTCCTTGACGTACTGCTAACGTTCTATTACAACTTATGAATTAT
GTATTGACAAATGCTGTTTATAGTGAAAGTGGTTTTAAGGTTCCAACCAT
AACGATTCATgtgatttataaaatatattgtTCTTACCCTCTAATATTGT
TCAAAATATTCGGACTCTCAATGAAAAGGATTCGTAGAGCTTCAATTTGA
ACGCAATGGAGTCTTTCTTGCAGATCATCATTATTTTATCAAGCAGTTTC
TTCATTCAAGTGCAAGCATTGCAGTGTTTCACATGTTCAGCTTACAATGG
TGATATTTGCAAAGCCACTCAACAATACCACGCTTGTAGCGAAGAAAATG
CTGCATGTCTGACCATGACATACAAATCATTGTTGAACGGGAAAGAGAAG
ACGTACTTTCAAAAGAAATGTATCAATGGTAGCTCTAAATGCGAAGCGAA
CTGCCAGAATCTTCAAGATTCCTATGTTTGTATGGCATCGTGTTGTCGTG
ACAATTTATGCAATTTGGAAACAGACAAAAAGACAATTTGGTTTGCCTTG
CTTTCTCCCTCGTCATCTGTTGACATTCAAAGACTTCACCCACTCTCCCT
CTTGGTCCTGATGGGCAACATGCTGATTCAGCAAATCGACTTTTGAAATG
GGAAACTTTTATAGTCGTGTTTTTCCACTCTGCATGTGCTTTTTGAAAGC
GTCCATCTCATGAGTATTGTAGCGCCATTTGAAAAAGGTTTCCTTTTGAT
GGATGATAGGGGttgtaaataaaacatttttcatcaCAATTCAAACGTGA
CttgttttttgataaaaatatcattAGGAATTTTATTCCTCGTGCTAAAT
ATgaatagttttgaaagttttataaCGCATAGATTTAGCTGTAATAAAGT
CAAGCTG Run BLAST on NCBI transcript from alignment at sc0000560:108247..109724+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00026040 ID=TCONS_00026040|Name=TCONS_00026040|organism=Clytia hemisphaerica|type=transcript|length=1478bp|location=Sequence derived from alignment at sc0000560:108247..109724+ (Clytia hemisphaerica)
GTTCTTTGTGATTTCTCcctaaaatattttatgaaattatgGTAGAAACA
CTAAAACCATAAAAGTTCAcaacaaaattgaaagaaaggAGAAGTTTGGT
TTACCTTCTTGTATATTAATTTTGGTCTAGATTTGATCGAAACCTGTCAT
TTTCATTTCCTTGACGTACTGCTAACGTTCTATTACAACTTATGAATTAT
GTATTGACAAATGCTGTTTATAGTGAAAGTGGTTTTAAGGTTCCAACCAT
AACGATTCATgtgatttataaaatatattgtTCTTACCCTCTAATATTGT
TCAAAATATTCGGACTCTCAATGAAAAGGATTCGTAGAGCTTCAATTTGA
ACGCAATGGAGTCTTTCTTGCAGATCATCATTATTTTATCAAGCAGTTTC
TTCATTCAAGGTATTCAATCAATCCTTTTTTACCTTTTCGTGTTTTTCTT
CAGTTATGTTTATCTTTCCTGGTCGTGAGAGACTGACCTCCTTTCATTTg
tccctttttcttttttttgtagtGAGGTCCTTCATCAGTCAAAACTTTTC
TACGGGCATCGATGATTTTTAATTACTAAACAGAGCTTCGACAGACTATT
TCTATTTTATCATTAGTGCAAGCATTGCAGTGTTTCACATGTTCAGCTTA
CAATGGTGATATTTGCAAAGCCACTCAACAATACCACGCTTGTAGCGAAG
AAAATGCTGCATGTCTGACCATGACATACAAATCATTGTTGAACGGGAAA
GAGAAGACGTACTTTCAAAAGAAATGTATCAATGGTAGCTCTAAATGCGA
AGCGAACTGCCAGAATCTTCAAGATTCCTATGTTTGTATGGTAAGCAAGC
TAAGATCTATCGAATGTCAAGAAGAAATTTACGCTCACCAAAAAGTAAAG
CACAGATTTTGTCCCTTATGACCTTTCCCATCTATTTTCTTCCACCTATA
TACCTTTTGAGTGGAAAAGGAAGGCTTAGTTATAGAAAAACCAACACACT
TCCCCCTTTTGTGTTTAAGTACTGCTAAACTTTAGTCTTCTTTCCCGTTT
TTTAGGCATCGTGTTGTCGTGACAATTTATGCAATTTGGAAACAGACAAA
AAGACAATTTGGTTTGCCTTGCTTTCTCCCTCGTCATCTGTTGACATTCA
AAGACTTCACCCACTCTCCCTCTTGGTCCTGATGGGCAACATGCTGATTC
AGCAAATCGACTTTTGAAATGGGAAACTTTTATAGTCGTGTTTTTCCACT
CTGCATGTGCTTTTTGAAAGCGTCCATCTCATGAGTATTGTAGCGCCATT
TGAAAAAGGTTTCCTTTTGATGGATGATAGGGGttgtaaataaaacattt
ttcatcaCAATTCAAACGTGACttgttttttgataaaaatatcattAGGA
ATTTTATTCCTCGTGCTAAATATgaatagttttgaaagttttataaCGCA
TAGATTTAGCTGTAATAAAGTCAAGCTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00026040-exon-sc0000560-1491911889:108247..108656 | TCONS_00026040-exon-sc0000560-1491911889:108247..108656 | Clytia hemisphaerica | exon |
| TCONS_00026040-exon-sc0000560-1510915933:108247..108656 | TCONS_00026040-exon-sc0000560-1510915933:108247..108656 | Clytia hemisphaerica | exon |
| TCONS_00026040-exon-sc0000560-1575043694:108247..108656 | TCONS_00026040-exon-sc0000560-1575043694:108247..108656 | Clytia hemisphaerica | exon |
| TCONS_00026040-exon-sc0000560-1491911889:108863..109086 | TCONS_00026040-exon-sc0000560-1491911889:108863..109086 | Clytia hemisphaerica | exon |
| TCONS_00026040-exon-sc0000560-1510915933:108863..109086 | TCONS_00026040-exon-sc0000560-1510915933:108863..109086 | Clytia hemisphaerica | exon |
| TCONS_00026040-exon-sc0000560-1575043694:108863..109086 | TCONS_00026040-exon-sc0000560-1575043694:108863..109086 | Clytia hemisphaerica | exon |
| TCONS_00026040-exon-sc0000560-1491911889:109302..109724 | TCONS_00026040-exon-sc0000560-1491911889:109302..109724 | Clytia hemisphaerica | exon |
| TCONS_00026040-exon-sc0000560-1510915933:109302..109724 | TCONS_00026040-exon-sc0000560-1510915933:109302..109724 | Clytia hemisphaerica | exon |
| TCONS_00026040-exon-sc0000560-1575043694:109302..109724 | TCONS_00026040-exon-sc0000560-1575043694:109302..109724 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000560 | supercontig | sc0000560:108247..109724 + |
Blast
The following BLAST results are available for this feature:
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