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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00026037 ID=TCONS_00026037|Name=TCONS_00026037|organism=Clytia hemisphaerica|type=transcript|length=4194bpRun BLAST on NCBI protein sequence of TCONS_00026037-protein >TCONS_00026037-protein ID=TCONS_00026037-protein|Name=TCONS_00026037-protein|organism=Clytia hemisphaerica|type=polypeptide|length=658bp FLAKKLIMSIGCRIVLLILWVYVVFTCALLLFSKGFLLNRVVINNASECQRun BLAST on NCBI transcript from alignment at sc0000560:96106..104125+ Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00026037 ID=TCONS_00026037|Name=TCONS_00026037|organism=Clytia hemisphaerica|type=transcript|length=8020bp|location=Sequence derived from alignment at sc0000560:96106..104125+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000560:96106..104125+ >TCONS_00026037 ID=TCONS_00026037|Name=TCONS_00026037|organism=Clytia hemisphaerica|type=CDS|length=11862bp|location=Sequence derived from alignment at sc0000560:96106..104125+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00026037 vs. Swiss-Prot (Human)
Match: PIGO (GPI ethanolamine phosphate transferase 3 OS=Homo sapiens GN=PIGO PE=1 SV=3) HSP 1 Score: 341.273 bits (874), Expect = 7.324e-98 Identity = 199/569 (34.97%), Postives = 297/569 (52.20%), Query Frame = 1
Query: 40 IVLLILWVYVVFTCALLLFSKGFLLNRVVINNASECQTAHWMVNNLQKGIHSHIRIDETSQKRNVENKLKIKCGV-ELQPKFQKAILVIIDGLRYDFL----TYNPDLDLKAVLPFENKMVKLYNLLSEQPANGKLFKFEADPPTTTMQRIKGITTGSLPTFVDAGTNFNSYEITEDNILSQTLKQNKNISFMGCSTWTELFPTHFHRKIPFSALNVRDLDTIDYGIMRNILQEVKRDDWSLLIAHFLGVDHCGHRYGTHHPEMTRKLTEMDKVIKDLTETMDEETILFVMGDHGMTRSGDHGGDSKDEVMAGLFVYSKKGLFQPTQDHLDLPKVSQIDLVPTLSLLLDQPIPFSNLGTIIPQFFQGPSKPYLPHYLKQSLPTNDATRELIARLFQQINAAHVSHLNTKQLFGFINEYQKVSTDLPFAKVEAARINFDFLDDKFEENLQELLNLDFTDPSKLQTRLKDLEELVLEFQNVHELLQGTLLDIKDTCRSVWAKFDVISMTMGISLMAFLGTFVLAAPHFFSLPSIVDPGRLFGAMLFT--GFGFSAVAFYFSLIGTQETERD 1725
++L + WV +F + LF+ GFLL R+ + N S CQ E ++ + K G + +F + +LV+ID LR+DF ++ P + LPF K+ L +L QP + +L++ + DPPTTTMQR+K +TTGSLPTF+DAG+NF S+ I EDN++ Q + + FMG TW +LFP F + F + NVRDLDT+D GI+ ++ + +W +LIAHFLGVDHCGH++G HHPEM +KL++MD+VI+ L E ++ +T+L V GDHGMT +GDHGGDS+ EV A LF+YS +F P+ + + Q+ LVPTL+LLL PIPF N+G ++ + F G + S P + A + A HLN +Q+ F++ Y + DL ++ L K + Q LL + L T + +L++ L + C WA+F ++ M G +L+A L A + + PG F +L T +G Y L+GT E + D
Sbjct: 6 VLLFLAWVCFLFYAGIALFTSGFLLTRLELTNHSSCQ--------------------EPPGPGSLPWGSQGKPGACWMASRFSRVVLVLIDALRFDFAQPQHSHVPR-EPPVSLPFLGKLSSLQRILEIQPHHARLYRSQVDPPTTTMQRLKALTTGSLPTFIDAGSNFASHAIVEDNLIKQLTSAGRRVVFMGDDTWKDLFPGAFSKAFFFPSFNVRDLDTVDNGILEHLYPTMDSGEWDVLIAHFLGVDHCGHKHGPHHPEMAKKLSQMDQVIQGLVERLENDTLLVVAGDHGMTTNGDHGGDSELEVSAALFLYSPTAVF-PSTPPEEPEVIPQVSLVPTLALLLGLPIPFGNIGEVMAELFSGG---------EDSQPHSSALAQ-----------ASALHLNAQQVSRFLHTYSAATQDLQAKELH----QLQNLFSKASADYQWLLQSPKGAEATLPTVIAELQQF--------------LRGARAMCIESWARFSLVRMAGGTALLAASCFICLLASQW-----AISPGFPFCPLLLTPVAWGLVGAIAYAGLLGTIELKLD 509 HSP 2 Score: 116.316 bits (290), Expect = 5.224e-26 Identity = 160/695 (23.02%), Postives = 291/695 (41.87%), Query Frame = 2
Query: 1982 LQGTLLDIKDTCRSVWAKFDVISMTMGISLMAFLGTFVLAAPHFFSLPSIVDPGRLFGAMLFT--GFGFCAVAFYFSLVGTQETERDXXXXXXXXXXXXXXXXXXXXVVPTYSTLKIKLSHLLNWTSLNRKWLVFS------ACFFIQCGSYFANSYIIHEDTVTLFFNQSLLLYTGFSFVVDIIREAKTSNTSKQSKPRSFALMKTRLIKSITETSNLTTLSQIAMCLLCLRTTKYFWFCREMQLRCNFSSYVLPLVSLMSEFTIGHVNERLFVA-LISMVSLLLSTYFYLKKRGSLKGNSPSVFSVKYISILMVVMILLHWCLQVMLTHPISNLFDVQTVQLIILPRLVYVLFLICLFCMVHRPLPVYMYE----QEKRT---------TPQDFHNQEIKELYHQLRQQLGGSYLNKETGDEQKLYVYGMRTVYXXXXXXXXXXXXXTTCMVMMDGMALPMFCLWITSFVVTKMFAINRPATDMSEVFI---CSAMWMMFSSVGFYGSGHQNTIPSVRYPAAYIGF---RGSIPEIVPQAMVILLNTFASPIICGLALPMLLI-----TNKGRPTNTDPDAQNSNGHVDSEIDVLENKNRSFLD--------LYRIAVTYLGLFMLKVSFAAGSAAFHRRHLMVWKIFAPRFMFEAVAFILSVPFVIAGILFFKRVDNRVAEFLTKL---QER 3934
LQ L + C WA+F ++ M G +L+A L A + + PG F +L T +G Y L+GT E + D +++ V S L W S +F + +F++S+++ E T F S +L VV + E + + PR + T + + L LLC R F C E C+ S ++ PL S++ G + A + ++V+LL + +L++ G+LK P + V++ LM + +W L L + + ++LPR V L L ++ +P+ V + RT T Q + + ++Y ++++ G ++ + Y + +VYS++ ++ L +L ++ + ++L L++ SF++ + A P T + + W + ++ FY +GHQ P++ + AA++GF GS + A+++ NTFAS ++ + P+LL+ ++G P ++ V E + D L ++ + YL + +++ A +A+ RRHLMVWK+FAP+F+FEAV FI+S ++ GI RVD V+ + +L Q+R
Sbjct: 428 LQQFLRGARAMCIESWARFSLVRMAGGTALLAASCFICLLASQW-----AISPGFPFCPLLLTPVAWGLVGAIAYAGLLGTIELKLDLVLLGA--------------VAAVSSFLPFLWKAWAGWGSKRPLATLFPIPGPVLLLLLFRLAVFFSDSFVVAEARATPFLLGSFILL----LVVQLHWEGQLLPPKLLTMPR----LGTSATTNPPRHNGAYALRLGIGLLLCTRLAGLFHRCPEETPVCHSSPWLSPLASMVG----GRAKNLWYGACVAALVALLAAVRLWLRRYGNLKSPEPPMLFVRWGLPLMALGTAAYWALASGADEAPPRLRVLVSGASMVLPRAVAGLAASGLALLLWKPVTVLVKAGAGAPRTRTVLTPFSGPPTSQADLDYVVPQIYRHMQEEFRGRLERTKSQGPLTVAAYQLGSVYSAAMVTALTLLAFPLLLLHAERISLVFLLLFLQSFLLLHLLAAGIPVTTPGPFTVPWQAVSAWALMATQTFYSTGHQPVFPAIHWHAAFVGFPEGHGSCTWL--PALLVGANTFASHLLFAVGCPLLLLWPFLCESQGLRKRQQPPGNEADARVRPEEEEEPLMEMRLRDAPQHFYAALLQLGLKYLFILGIQILACALAASILRRHLMVWKVFAPKFIFEAVGFIVSSVGLLLGIALVMRVDGAVSSWFRQLFLAQQR 1089 The following BLAST results are available for this feature:
BLAST of TCONS_00026037 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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