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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00026031 ID=TCONS_00026031|Name=TCONS_00026031|organism=Clytia hemisphaerica|type=transcript|length=3352bpRun BLAST on NCBI protein sequence of TCONS_00026031-protein >TCONS_00026031-protein ID=TCONS_00026031-protein|Name=TCONS_00026031-protein|organism=Clytia hemisphaerica|type=polypeptide|length=996bp MASDSEEEPETGHEEDQLAQDTTGMTMSGEHSTKKKNLFSSLGKVLRKSKRun BLAST on NCBI transcript from alignment at sc0000560:47932..84070+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00026031 ID=TCONS_00026031|Name=TCONS_00026031|organism=Clytia hemisphaerica|type=transcript|length=36139bp|location=Sequence derived from alignment at sc0000560:47932..84070+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000560:47932..84070+ >TCONS_00026031 ID=TCONS_00026031|Name=TCONS_00026031|organism=Clytia hemisphaerica|type=CDS|length=65802bp|location=Sequence derived from alignment at sc0000560:47932..84070+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00026031 vs. Swiss-Prot (Human)
Match: MCTP1 (Multiple C2 and transmembrane domain-containing protein 1 OS=Homo sapiens GN=MCTP1 PE=2 SV=2) HSP 1 Score: 514.612 bits (1324), Expect = 1.143e-163 Identity = 298/762 (39.11%), Postives = 461/762 (60.50%), Query Frame = 3
Query: 945 RVVVDGSVHGSFDKV--PPGTTASTIWKSGVCSYFSVEGEIIAGQGLIARDKTGTSDPYVKIKLRSKCVFKTKIVYRNLNPSWNEQFQLAIDDVNTDLVFKVYDFDRLSHDDDMGEASVSLGNIEVNKEHELSLPLINKHGFQEDLGKIVLKLAIKPK----------------------STNETI---------------------------EL-------AQLLSSAKRVSKHSSRSQIWDSLLSVILVKGTNLRPMDHTGKSDPYVRFKLGNDKYKSKVCKQTLEPVWHEQFDMKMFVGKDDVPLLELSVWDKDSGK-DEFMGRTSLDLDSLEKEKSHYVELNLEDQPGVLCLHVSITALNNEGSASDIKIHN-DDSLRVKEIENDFSLLKTTKAMSQVGWMQLKLHRASNLAAKDIGGQSDPFAVIELGNQRLVTPTIYKTLNPQWDKVYELPVYDIHEVLEITVFDEDKRGAPEFLGRVQIPLLSISSWERRLFQLKDKRLQAQAKGHLIMTLGVVYNPIRASLRTVNPREERVLDEAPRFRRQLLQKNVDRITNLIRSIIATGEFIQSLFTWKFRLRSAFAFTIYILLVMNFDAFMXXXXXXXXXXKNYIVFMLAP-NKQSQXXXXXXXXXXXXXXXXKNKKGRSKTFREKLEAINNICTLVQNKMDDVASFGERIKNTFNWSVPFLSYLLMVILLLGTVVLYIVPIRYLLLAWGVNKFTKRIRKPNAIPNNELLDFLSRVPSDPEVKKRRPLKTD 3047
R G HGS K+ GT+ + + + Y ++ + GQ L ARD+ GTSDPYVK K+ K VF++KI+++NLNP W E+ + +D + L KV+D+D DD MG A + L +E+N+ +++L L + H DLG I+L + + PK S NE + EL Q + + R+S +S +W ++S+ L++G +L+ MD G SDPYV+F+LG+ KYKSK+ +TL P W EQFD ++ + V ++++ WDKD+GK D+F+GR +DL +L +E++H +EL LE+ G L L V++TA + S SD+ +++ +D +EI +S L+ + VG++Q+K+ RA L A D+ G+SDPF V+EL N RL+T T+YK LNP+W+KV+ + DIH VLE+TV+DED+ + +FLG+V IPLLSI + E++ + LK+K+L KG + + + V++N ++ASLRT+ P+E++ ++E R +QLL +N R+ + ++ ++ S F W RS AF +++ +V NF+ +M+PL+L L+L NY + + N+Q E +D++++DD+ +K K F K+ AI +C VQN +D+VASFGERIKNTFNW+VPFLS+L +V L + T +LY +P+RY++L WG+NKFTK++R P AI NNELLDFLSRVPSD +V + + LK D
Sbjct: 228 RAPETGEEHGSSQKIINTAGTSNAEVPLADPGMY-QLDITLRRGQSLAARDRGGTSDPYVKFKIGGKEVFRSKIIHKNLNPVWEEKACILVDHLREPLYIKVFDYDFGLQDDFMGSAFLDLTQLELNRPTDVTLTLKDPHYPDHDLGIILLSVILTPKEGESRDVTMLMRKSWKRSSKELSENEVVGSYFSVKSLFWRTCGRPALPVLGFCRAELQNPYCKNVQFQTQSLRLSDLHRKSHLWRGIVSITLIEGRDLKAMDSNGLSDPYVKFRLGHQKYKSKIMPKTLNPQWREQFDFHLYEERGGV--IDITAWDKDAGKRDDFIGRCQVDLSALSREQTHKLELQLEEGEGHLVLLVTLTA-SATVSISDLSVNSLEDQKEREEILKRYSPLRIFHNLKDVGFLQVKVIRAEGLMAADVTGKSDPFCVVELNNDRLLTHTVYKNLNPEWNKVFTFNIKDIHSVLEVTVYDEDRDRSADFLGKVAIPLLSIQNGEQKAYVLKNKQLTGPTKGVIYLEIDVIFNAVKASLRTLIPKEQKYIEEENRLSKQLLLRNFIRMKRCVMVLVNAAYYVNSCFDWDSPPRSLAAFVLFLFVVWNFELYMIPLVLLLLLTWNYFLIISGKDNRQRDTVVEDMLEDEEEEDDKDDKDSEKKGFINKIYAIQEVCVSVQNILDEVASFGERIKNTFNWTVPFLSWLAIVALCVFTAILYCIPLRYIVLVWGINKFTKKLRSPYAIDNNELLDFLSRVPSDVQVVQYQELKPD 985 The following BLAST results are available for this feature:
BLAST of TCONS_00026031 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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