|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00026027 ID=TCONS_00026027|Name=TCONS_00026027|organism=Clytia hemisphaerica|type=transcript|length=1427bp
CAGGTCCAAAATCTTTATGTCATTACAAAGATAATGGTGTTCCATTCCAA
CGTAGCGGTCAACCCGGTGTCTTCGTCACCTGTGTCTTTGGTCGCCCCAT
TTGCAGACCATGCCCTACAGGACTTGTTTTCAGCGATAAGTTACGAACGT
GTGTTTCCTTGAACCCTCCCACCACTGGAAAAGCACCAACTACTGTTGCT
CGACCTACCTCAACCACTCAAAAAAGACCAACCACTAGACCAATTCCATG
TCCAAGCAAAGCATGCCATGGTAAAAAAGACGGTTCAGTGTTCAGACTTA
GTAGCAGACGAGcaaacattttcgtcacttGTGATAATGGAAAAGCCGTC
TGCAGAAGGTGCTCTAAAGGACTTGTGTTCATCAACCGCCTTCAAACTTG
TGCAGATCCCAACCAACCCACCACAAGCAAACCAAGGACCACCAGACAAC
AACGACCCACCACCACAAGAGCCCCAAAGACAACCCGACAACAACGACCC
ACCACCACAAGAAAACCAAGAACCACCAGACAACAACGACCCACCACCAC
AAGAAAACCAAGAACCACCAGACAACAAAGGCCCACCACACGAAGACCAT
CAGTTCCATGCCCAAATGTTTTATGCAAACACAAACCAGAGAACGCCATC
TTTCGCCTCTCTAGCAGAAGACCAAATTACTTTGTTCGTTGTGTGAGCCA
TCGTGCTATCTGTCAACGATGCCCAGGAAATCTCATCTTCAGCAATAAAG
CTGAAACTTGTGTGCGTGTACCTGAAGCACCAACCTCTACAAGAAAACCA
AGGACCACCCAACGAAAACCAACGACTGTTCAACGAAAGCCAACGACCAC
CCAACGAAAACCGACGACTGTGCAGCAAAAACCAACGACTACCCAACGAA
AACCAACGACCGTTCAACAAAAGCCAACAACCACACGAAGACCATTAAGC
TGCAAGAACTCTTTGTGCAAGAACCGACACGGTGACGCATTCTTTGCCGA
TCCACACAGACCCTCAGTCTTCGTTCGATGTGTCAACTACAAACCCATCT
GTCAACGATGTCCAAGTGGTCTTGTCTTCAACAACAAAGCACAAGCCTGT
GACTTccctaaaaaacaaaagaagcaTTAAACTGCATACCAAACATTGAT
GAAAAATATCCATTGGTATtaatcaaattttcaataaaaatcaaattgGC
TTGTCTTATCGTCTAAATGAATTGTagaaaatagatttttattatttttt
agtgatctttcgtttttttcaaatacaGTATATCATCGATCTCATAATTA
ACTTTCTTGCAAAATATTGTTTACCGAGTctgaaccattgagtttcaagc
ccgaagggctagaggtcaatctctaacctttctcaggcaagaaaaattga
agccttaaaatatgcgccgtatttttg Run BLAST on NCBI protein sequence of TCONS_00026027-protein >TCONS_00026027-protein ID=TCONS_00026027-protein|Name=TCONS_00026027-protein|organism=Clytia hemisphaerica|type=polypeptide|length=375bp
GPKSLCHYKDNGVPFQRSGQPGVFVTCVFGRPICRPCPTGLVFSDKLRTC
VSLNPPTTGKAPTTVARPTSTTQKRPTTRPIPCPSKACHGKKDGSVFRLS
SRRANIFVTCDNGKAVCRRCSKGLVFINRLQTCADPNQPTTSKPRTTRQQ
RPTTTRAPKTTRQQRPTTTRKPRTTRQQRPTTTRKPRTTRQQRPTTRRPS
VPCPNVLCKHKPENAIFRLSSRRPNYFVRCVSHRAICQRCPGNLIFSNKA
ETCVRVPEAPTSTRKPRTTQRKPTTVQRKPTTTQRKPTTVQQKPTTTQRK
PTTVQQKPTTTRRPLSCKNSLCKNRHGDAFFADPHRPSVFVRCVNYKPIC
QRCPSGLVFNNKAQACDFPKKQKKH Run BLAST on NCBI transcript from alignment at sc0000560:42476..44880+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00026027 ID=TCONS_00026027|Name=TCONS_00026027|organism=Clytia hemisphaerica|type=transcript|length=2405bp|location=Sequence derived from alignment at sc0000560:42476..44880+ (Clytia hemisphaerica)
CAGGTCCAAAATCTTTATGTCATTACAAAGATAATGGTGTTCCATTCCAA
CGTAGCGGTCAACCCGGTGTCTTCGTCACCTGTGTCTTTGGTCGCCCCAT
TTGCAGACCATGCCCTACAGGACTTGTTTTCAGCGATAAGTTACGAACGT
GTGTTTCCTTGAACCCTCCCACCACTGGAAAAGCACCAACTACTGTTGCT
CGACCTACCTCAACCACTCAAAAAAGACCAACCACTAGACCAATTCCATG
TAAGTACTGATCCAATTTCTTTTCTTGAGATGCACCAAGAGAAGGATATC
AATATCTTTTTGATTCTTTAACTTTGGTTCTATAATTTGAATGTTAATTA
TTTTTCTATGGCTGTTCTCATGAGGATACAcgtaattttataagaacatc
caaatattttcaagccttcggatgttcctaactttttgagttttaagcct
aaatgtccttatatagtttgttcttataaaaaacgtgtattattaCTGAC
TATCTAAAGTTGTATTTCTTCATCAGGTCCAAGCAAAGCATGCCATGGTA
AAAAAGACGGTTCAGTGTTCAGACTTAGTAGCAGACGAGcaaacattttc
gtcacttGTGATAATGGAAAAGCCGTCTGCAGAAGGTGCTCTAAAGGACT
TGTGTTCATCAACCGCCTTCAAACTTGTGCAGATCCCAACCAACCCACCA
CAAGCAAACCAAGGACCACCAGACAACAACGACCCACCACCACAAGAGCC
CCAAAGACAACCCGACAACAACGACCCACCACCACAAGAAAACCAAGAAC
CACCAGACAACAACGACCCACCACCACAAGAAAACCAAGAACCACCAGAC
AACAAAGGCCCACCACACGAAGACCATCAGTTCCATGTAAGCCCTATTAC
ACCCCTGAGTCACAGACCCATTGggaccccactggaaaatttggcaaaaa
tttcgtccccggtgggaaaaaaacctggaatttcagccccaccgggaaat
tgactttgatttcatccccactcgaaattcattgtttaaaaattgtactc
caaaagcatccccactggaaaattttaaccctggaacaatagaatttata
ttCTCATCGGGAATTCAATAGGAATGTTTatcccactgaggaaaaaagtt
ccagtggggctgtgagacagtgTCATATTCCTAGACTCTATAGGACACCC
TTGTATCGGTATAGGCGTCCCATTTATAATCTGCGAATCAAACtaccggg
tggtccaaaaaaacttccataagtttcaaattttgacgtagaGCGCTCTA
ATTGTGTTATCGACTTCTCAGGTTGGAAGATTGGACTTTTTATATTCTTA
AGTGCGGGAATGAATCAGAAGACCAATAGCCAGCTTATTAAAACATAGAA
CTTAACGTTAGAACTTTTATTCTCtggatatttttttctcaactctctct
ctctcttattATAGGCCCAAATGTTTTATGCAAACACAAACCAGAGAACG
CCATCTTTCGCCTCTCTAGCAGAAGACCAAATTACTTTGTTCGTTGTGTG
AGCCATCGTGCTATCTGTCAACGATGCCCAGGAAATCTCATCTTCAGCAA
TAAAGCTGAAACTTGTGTGCGTGTACCTGAAGCACCAACCTCTACAAGAA
AACCAAGGACCACCCAACGAAAACCAACGACTGTTCAACGAAAGCCAACG
ACCACCCAACGAAAACCGACGACTGTGCAGCAAAAACCAACGACTACCCA
ACGAAAACCAACGACCGTTCAACAAAAGCCAACAACCACACGAAGACCAT
TAAGCTGTAAGGTTTTATTCATTTTGACATGAATGAGAGTCATCTAAAAG
TACATTTTCTCGTATTTCTGATTGAATTGAATTACAAAAGCTAGAATTAA
TTTAAAtcatttatcctcttaatattcAGGCAAGAACTCTTTGTGCAAGA
ACCGACACGGTGACGCATTCTTTGCCGATCCACACAGACCCTCAGTCTTC
GTTCGATGTGTCAACTACAAACCCATCTGTCAACGATGTCCAAGTGGTCT
TGTCTTCAACAACAAAGCACAAGCCTGTGACTTccctaaaaaacaaaaga
agcaTTAAACTGCATACCAAACATTGATGAAAAATATCCATTGGTATtaa
tcaaattttcaataaaaatcaaattgGCTTGTCTTATCGTCTAAATGAAT
TGTagaaaatagatttttattattttttagtgatctttcgtttttttcaa
atacaGTATATCATCGATCTCATAATTAACTTTCTTGCAAAATATTGTTT
ACCGAGTctgaaccattgagtttcaagcccgaagggctagaggtcaatct
ctaacctttctcaggcaagaaaaattgaagccttaaaatatgcgccgtat
ttttg Coding sequence (CDS) from alignment at sc0000560:42476..44880+ >TCONS_00026027 ID=TCONS_00026027|Name=TCONS_00026027|organism=Clytia hemisphaerica|type=CDS|length=4512bp|location=Sequence derived from alignment at sc0000560:42476..44880+ (Clytia hemisphaerica)
GGTCCAAAATCTTTATGTCATTACAAAGATAATGGTGTTCCATTCCAACG
TAGCGGTCAACCCGGTGTCTTCGTCACCTGTGTCTTTGGTCGCCCCATTT
GCAGACCATGCCCTACAGGACTTGTTTTCAGCGATAAGTTACGAACGTGT
GTTTCCTTGAACCCTCCCACCACTGGAAAAGCACCAACTACTGTTGCTCG
ACCTACCTCAACCACTCAAAAAAGACCAACCACTAGACCAATTCCATGTC
CAAGCAAAGCATGCCATGGTAAAAAAGACGGTTCAGTGTTCAGACTTAGT
AGCAGACGAGcaaacattttcgtcacttGTGATAATGGAAAAGCCGTCTG
CAGAAGGTGCTCTAAAGGACTTGTGTTCATCAACCGCCTTCAAACTTGTG
CAGATCCCAACCAACCCACCACAAGCAAACCAAGGACCACCAGACAACAA
CGACCCACCACCACAAGAGCCCCAAAGACAACCCGACAACAACGACCCAC
CACCACAAGAAAACCAAGAACCACCAGACAACAACGACCCACCACCACAA
GAAAACCAAGAACCACCAGACAACAAAGGCCCACCACACGAAGACCATCA
GTTCCATGCCCAAATGTTTTATGCAAACACAAACCAGAGAACGCCATCTT
TCGCCTCTCTAGCAGAAGACCAAATTACTTTGTTCGTTGTGTGAGCCATC
GTGCTATCTGTCAACGATGCCCAGGAAATCTCATCTTCAGCAATAAAGCT
GAAACTTGTGTGCGTGTACCTGAAGCACCAACCTCTACAAGAAAACCAAG
GACCACCCAACGAAAACCAACGACTGTTCAACGAAAGCCAACGACCACCC
AACGAAAACCGACGACTGTGCAGCAAAAACCAACGACTACCCAACGAAAA
CCAACGACCGTTCAACAAAAGCCAACAACCACACGAAGACCATTAAGCTG
CAAGAACTCTTTGTGCAAGAACCGACACGGTGACGCATTCTTTGCCGATC
CACACAGACCCTCAGTCTTCGTTCGATGTGTCAACTACAAACCCATCTGT
CAACGATGTCCAAGTGGTCTTGTCTTCAACAACAAAGCACAAGCCTGTGA
CTTccctaaaaaacaaaagaagcaTTAAGGTCCAAAATCTTTATGTCATT
ACAAAGATAATGGTGTTCCATTCCAACGTAGCGGTCAACCCGGTGTCTTC
GTCACCTGTGTCTTTGGTCGCCCCATTTGCAGACCATGCCCTACAGGACT
TGTTTTCAGCGATAAGTTACGAACGTGTGTTTCCTTGAACCCTCCCACCA
CTGGAAAAGCACCAACTACTGTTGCTCGACCTACCTCAACCACTCAAAAA
AGACCAACCACTAGACCAATTCCATGTCCAAGCAAAGCATGCCATGGTAA
AAAAGACGGTTCAGTGTTCAGACTTAGTAGCAGACGAGcaaacattttcg
tcacttGTGATAATGGAAAAGCCGTCTGCAGAAGGTGCTCTAAAGGACTT
GTGTTCATCAACCGCCTTCAAACTTGTGCAGATCCCAACCAACCCACCAC
AAGCAAACCAAGGACCACCAGACAACAACGACCCACCACCACAAGAGCCC
CAAAGACAACCCGACAACAACGACCCACCACCACAAGAAAACCAAGAACC
ACCAGACAACAACGACCCACCACCACAAGAAAACCAAGAACCACCAGACA
ACAAAGGCCCACCACACGAAGACCATCAGTTCCATGCCCAAATGTTTTAT
GCAAACACAAACCAGAGAACGCCATCTTTCGCCTCTCTAGCAGAAGACCA
AATTACTTTGTTCGTTGTGTGAGCCATCGTGCTATCTGTCAACGATGCCC
AGGAAATCTCATCTTCAGCAATAAAGCTGAAACTTGTGTGCGTGTACCTG
AAGCACCAACCTCTACAAGAAAACCAAGGACCACCCAACGAAAACCAACG
ACTGTTCAACGAAAGCCAACGACCACCCAACGAAAACCGACGACTGTGCA
GCAAAAACCAACGACTACCCAACGAAAACCAACGACCGTTCAACAAAAGC
CAACAACCACACGAAGACCATTAAGCTGCAAGAACTCTTTGTGCAAGAAC
CGACACGGTGACGCATTCTTTGCCGATCCACACAGACCCTCAGTCTTCGT
TCGATGTGTCAACTACAAACCCATCTGTCAACGATGTCCAAGTGGTCTTG
TCTTCAACAACAAAGCACAAGCCTGTGACTTccctaaaaaacaaaagaag
caTTAAGGTCCAAAATCTTTATGTCATTACAAAGATAATGGTGTTCCATT
CCAACGTAGCGGTCAACCCGGTGTCTTCGTCACCTGTGTCTTTGGTCGCC
CCATTTGCAGACCATGCCCTACAGGACTTGTTTTCAGCGATAAGTTACGA
ACGTGTGTTTCCTTGAACCCTCCCACCACTGGAAAAGCACCAACTACTGT
TGCTCGACCTACCTCAACCACTCAAAAAAGACCAACCACTAGACCAATTC
CATGTCCAAGCAAAGCATGCCATGGTAAAAAAGACGGTTCAGTGTTCAGA
CTTAGTAGCAGACGAGcaaacattttcgtcacttGTGATAATGGAAAAGC
CGTCTGCAGAAGGTGCTCTAAAGGACTTGTGTTCATCAACCGCCTTCAAA
CTTGTGCAGATCCCAACCAACCCACCACAAGCAAACCAAGGACCACCAGA
CAACAACGACCCACCACCACAAGAGCCCCAAAGACAACCCGACAACAACG
ACCCACCACCACAAGAAAACCAAGAACCACCAGACAACAACGACCCACCA
CCACAAGAAAACCAAGAACCACCAGACAACAAAGGCCCACCACACGAAGA
CCATCAGTTCCATGCCCAAATGTTTTATGCAAACACAAACCAGAGAACGC
CATCTTTCGCCTCTCTAGCAGAAGACCAAATTACTTTGTTCGTTGTGTGA
GCCATCGTGCTATCTGTCAACGATGCCCAGGAAATCTCATCTTCAGCAAT
AAAGCTGAAACTTGTGTGCGTGTACCTGAAGCACCAACCTCTACAAGAAA
ACCAAGGACCACCCAACGAAAACCAACGACTGTTCAACGAAAGCCAACGA
CCACCCAACGAAAACCGACGACTGTGCAGCAAAAACCAACGACTACCCAA
CGAAAACCAACGACCGTTCAACAAAAGCCAACAACCACACGAAGACCATT
AAGCTGCAAGAACTCTTTGTGCAAGAACCGACACGGTGACGCATTCTTTG
CCGATCCACACAGACCCTCAGTCTTCGTTCGATGTGTCAACTACAAACCC
ATCTGTCAACGATGTCCAAGTGGTCTTGTCTTCAACAACAAAGCACAAGC
CTGTGACTTccctaaaaaacaaaagaagcaTTAAGGTCCAAAATCTTTAT
GTCATTACAAAGATAATGGTGTTCCATTCCAACGTAGCGGTCAACCCGGT
GTCTTCGTCACCTGTGTCTTTGGTCGCCCCATTTGCAGACCATGCCCTAC
AGGACTTGTTTTCAGCGATAAGTTACGAACGTGTGTTTCCTTGAACCCTC
CCACCACTGGAAAAGCACCAACTACTGTTGCTCGACCTACCTCAACCACT
CAAAAAAGACCAACCACTAGACCAATTCCATGTCCAAGCAAAGCATGCCA
TGGTAAAAAAGACGGTTCAGTGTTCAGACTTAGTAGCAGACGAGcaaaca
ttttcgtcacttGTGATAATGGAAAAGCCGTCTGCAGAAGGTGCTCTAAA
GGACTTGTGTTCATCAACCGCCTTCAAACTTGTGCAGATCCCAACCAACC
CACCACAAGCAAACCAAGGACCACCAGACAACAACGACCCACCACCACAA
GAGCCCCAAAGACAACCCGACAACAACGACCCACCACCACAAGAAAACCA
AGAACCACCAGACAACAACGACCCACCACCACAAGAAAACCAAGAACCAC
CAGACAACAAAGGCCCACCACACGAAGACCATCAGTTCCATGCCCAAATG
TTTTATGCAAACACAAACCAGAGAACGCCATCTTTCGCCTCTCTAGCAGA
AGACCAAATTACTTTGTTCGTTGTGTGAGCCATCGTGCTATCTGTCAACG
ATGCCCAGGAAATCTCATCTTCAGCAATAAAGCTGAAACTTGTGTGCGTG
TACCTGAAGCACCAACCTCTACAAGAAAACCAAGGACCACCCAACGAAAA
CCAACGACTGTTCAACGAAAGCCAACGACCACCCAACGAAAACCGACGAC
TGTGCAGCAAAAACCAACGACTACCCAACGAAAACCAACGACCGTTCAAC
AAAAGCCAACAACCACACGAAGACCATTAAGCTGCAAGAACTCTTTGTGC
AAGAACCGACACGGTGACGCATTCTTTGCCGATCCACACAGACCCTCAGT
CTTCGTTCGATGTGTCAACTACAAACCCATCTGTCAACGATGTCCAAGTG
GTCTTGTCTTCAACAACAAAGCACAAGCCTGTGACTTccctaaaaaacaa
aagaagcaTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00026027-exon-sc0000560-1491911889:42476..42724 | TCONS_00026027-exon-sc0000560-1491911889:42476..42724 | Clytia hemisphaerica | exon |
| TCONS_00026027-exon-sc0000560-1510915933:42476..42724 | TCONS_00026027-exon-sc0000560-1510915933:42476..42724 | Clytia hemisphaerica | exon |
| TCONS_00026027-exon-sc0000560-1575043694:42476..42724 | TCONS_00026027-exon-sc0000560-1575043694:42476..42724 | Clytia hemisphaerica | exon |
| TCONS_00026027-exon-sc0000560-1491911889:43002..43361 | TCONS_00026027-exon-sc0000560-1491911889:43002..43361 | Clytia hemisphaerica | exon |
| TCONS_00026027-exon-sc0000560-1510915933:43002..43361 | TCONS_00026027-exon-sc0000560-1510915933:43002..43361 | Clytia hemisphaerica | exon |
| TCONS_00026027-exon-sc0000560-1575043694:43002..43361 | TCONS_00026027-exon-sc0000560-1575043694:43002..43361 | Clytia hemisphaerica | exon |
| TCONS_00026027-exon-sc0000560-1491911889:43940..44281 | TCONS_00026027-exon-sc0000560-1491911889:43940..44281 | Clytia hemisphaerica | exon |
| TCONS_00026027-exon-sc0000560-1510915933:43940..44281 | TCONS_00026027-exon-sc0000560-1510915933:43940..44281 | Clytia hemisphaerica | exon |
| TCONS_00026027-exon-sc0000560-1575043694:43940..44281 | TCONS_00026027-exon-sc0000560-1575043694:43940..44281 | Clytia hemisphaerica | exon |
| TCONS_00026027-exon-sc0000560-1491911889:44405..44880 | TCONS_00026027-exon-sc0000560-1491911889:44405..44880 | Clytia hemisphaerica | exon |
| TCONS_00026027-exon-sc0000560-1510915933:44405..44880 | TCONS_00026027-exon-sc0000560-1510915933:44405..44880 | Clytia hemisphaerica | exon |
| TCONS_00026027-exon-sc0000560-1575043694:44405..44880 | TCONS_00026027-exon-sc0000560-1575043694:44405..44880 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000560 | supercontig | sc0000560:42476..44880 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR002557 | Chitin-bd_dom |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0005576 | extracellular region |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006030 | chitin metabolic process |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0008061 | chitin binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006030 |
chitin metabolic process |
| cellular_component |
GO:0005576 |
extracellular region |
| molecular_function |
GO:0008061 |
chitin binding |
Blast
The following BLAST results are available for this feature:
|
