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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00026025 ID=TCONS_00026025|Name=TCONS_00026025|organism=Clytia hemisphaerica|type=transcript|length=446bp
AACAAAAGTATTACACGACCACAGTTCAACGCTACTTCCCtcctaaacaa
aaacaaagttttcaaaagcTTCGACACATCAACACGTGTGCAAGTGATAT
TCCAATGCACTATTACAACACATTGTACAGTAAATCGTCCTACAGCACTG
ATTTCTCACCAAGTAGCCCATCCAAGAAGCTTGAATTGAACGAAAATGCG
CTTCAAAATCTGCAAAAATCTCACATAGTTGAACCATTGAAAGGGTTCAG
TGAATTCAAGACAACTCACAATCGCTTCTTCACACCCAAGAAAATCACTC
CTCATCCACCGTTATCCATCGGATTTCTGCAGAAGAGTTCTGTGCCCATT
GGAACGATGACCGTAGTGGAATAGTTTATTTAGTTTGTCTATTATACTCT
TTATATGACGAAATATTTCATGATTGAAAGTGAAAATCATCACCGC Run BLAST on NCBI transcript from alignment at sc0000560:33642..36418+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00026025 ID=TCONS_00026025|Name=TCONS_00026025|organism=Clytia hemisphaerica|type=transcript|length=2777bp|location=Sequence derived from alignment at sc0000560:33642..36418+ (Clytia hemisphaerica)
AACAAAAGTATTACACGACCACAGTTCAACGCTACTTCCCtcctaaacaa
aaacaaagttttcaaaagcTTCGACACATCAACACGTGTGCAAGTGATAT
TCCAATGCACTATTACAGTAGGTGTTCTCTCTCTCCATCTCAATCAACTC
CGTGTAtagtttaggggggggggggttttttgaTTGTCATCTGAAATTTC
TATAGAATTATCCTGAGGGTCTAAATTCCCAAATGTATTTCCTAAGGGGG
CATTATTGCTTAAGGCGTGCGTCTTCCTACCTAAAGAGGGAAGCTAGACC
CTTTAGACACTATGGTCACTTATTTGAAAGGGGGGGCTCGACCCTTTAGA
CACAATGGTCACTTATTTGAAAGGGGGGGCTCGACCCTTTAGACACCATG
GTCTCTTATTTGACCTTTATTCTCCTTGTCTTCTTAAGATGATAATGTCC
ATAACAATAACTGTCGATAACAATGTACCAGTGGCACTTGAGGCAGACCT
AACATGTTCTTTTAAAGCGTAAAAGTCTaaatattctcaaaaaattttct
gttataTTGatgtttagatatttttattctcGTTTAGACACATTGTACAG
TAAATCGTCCTACAGCACTGATTTCTCACCAAGTAGCCCATCCAAGAAGC
TTGAATTGAACGAAAATGCGCTTCAAAATGTAAGTTTATCTGGTCTATAG
CTCACCCTACAGTCAGCGTGAAAAGAGCTCTCATGTTTTGTGTTTTCATG
CTTCTTTGTCTAGCAACCGGTAAATTTAGGTTAATCCGGATTTTTGGCAT
GAATGGAGCTTAGAATCAgaattttttcgcaattttcaaaatcaaaagaa
atcgttTTATAAAGTCTTAACATAAACAACTGTAcaaacgcactttgtaa
tacctgccacactttgtaataaaagaaaatttccaTCCAATCCAAATTTC
CATATAAAACTGTTAGTATTGGAGTGGTTACAAAAATCAAGGTTGTTACA
TCTCTACCGGGttcgccacaaaaaagtttctctctttgaaactaattttc
ttgaaatctaaaagaagaaagatagacttaaattttgatgggtcatttat
taaaatcgattcattagatcgaaagttaggctcaattgaataaaaaagct
actttcagaaagtgctcgaaaacgttaaaaatcgacctgtcaaattttta
ttttaaatttggcaatcgcaatagtctttacatgattaagagcattttac
aGTAACTAAACGCAAACATTTTGAGACTGAAGGgtcaaaagggtttaaaa
tcttcatcgaAATCAATTCAATATCTTTACAGAAATTTCCTAAGactttt
ggttctagactggataaagtctatgtaaggctggatttaCCTCGAAACCC
ACATTTGAtgtaattttttatgaattttatcagattttttggcctttttc
gacgatttttcttactttcattgaaattcaaccttcctttaattaacaaa
aggtcatttagacagctaattatcattttaatggctgaaacgaaaatact
gatgtatcatgtaattatgcttctgtttaatttgatgggtcgatttttaa
cttttttgagcactttccgaaagtaacttttttatttaattgagcataac
ttttgatctaatgaatcggatttaataaatgacccatcaaaatttaagtc
tatctttcttctctccgatgaaataagaatggctcttttaaaatttttag
atttcgagaaaattagtttcaaagagagaaacttttctGTGGCGCACCCG
TTAtaataaatgaaaattcaatAAGCCTATGATTAGGCAAGCAGTAAGGC
AGTAAGATCATTCATTGTTCATAATTTTACTAAGTATTTAGAACTGATTA
CCCAGTGTATTTTCTGAAACTTAATATGAAAACCTTCAATTTTGGCTGTT
TTGAATGTATACTGAAGTAACTATTTGTTGGTATTTAAACTTGCATATTA
TGTCAAAGTGCATTAGCTTTTTCATATTACAAAGTGTATTGATgattatt
acaaagtgtgtcaaGGTGTGTTACAAAGCGTgacaggtattacaaagtgt
ggcgtTAGTAACAACAACCTCATTTTTCGTTGTATCATTCTGCatccggg
ggagggggtactagttTTGCAAGTTGACAGGTATGTcctagccaaaaatc
gaaaatctaccattaaagagaaaaaattgaaatttttgggatccttagag
agacttctCTCTAAAGTCTTTCTCGATTTTCACCCAATTTTGGCCcatcc
aatcaaagattttcgtgaattttcgATCCTTTTAGAGAGTGAATTGgttt
tttgtaacccttagagaaacTTTCGAGAGAGTGAAAATGGGATCCTTATG
GCttgcacatacccgacacccatttTTCCTAAGTAAACCCCCCAgtaaac
cccccccccagcaTCCAAATTTAAATGTAAATTTTAAAGGGTTTGCAATA
TGGTGAAATTTATACAGAGTATTTCCTTTCTGCTTTTTAGCTGCAAAAAT
CTCACATAGTTGAACCATTGAAAGGGTTCAGTGAATTCAAGACAACTCAC
AATCGCTTCTTCACACCCAAGAAAATCACTCCTCATCCACCGTTATCCAT
CGGATTTCTGCAGAAGAGTTCTGTGCCCATTGGAACGATGACCGTAGTGG
AATAGTTTATTTAGTTTGTCTATTATACTCTTTATATGACGAAATATTTC
ATGATTGAAAGTGAAAATCATCACCGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00026025-exon-sc0000560-1491911889:33642..33758 | TCONS_00026025-exon-sc0000560-1491911889:33642..33758 | Clytia hemisphaerica | exon |
| TCONS_00026025-exon-sc0000560-1510915933:33642..33758 | TCONS_00026025-exon-sc0000560-1510915933:33642..33758 | Clytia hemisphaerica | exon |
| TCONS_00026025-exon-sc0000560-1575043694:33642..33758 | TCONS_00026025-exon-sc0000560-1575043694:33642..33758 | Clytia hemisphaerica | exon |
| TCONS_00026025-exon-sc0000560-1491911889:34229..34320 | TCONS_00026025-exon-sc0000560-1491911889:34229..34320 | Clytia hemisphaerica | exon |
| TCONS_00026025-exon-sc0000560-1510915933:34229..34320 | TCONS_00026025-exon-sc0000560-1510915933:34229..34320 | Clytia hemisphaerica | exon |
| TCONS_00026025-exon-sc0000560-1575043694:34229..34320 | TCONS_00026025-exon-sc0000560-1575043694:34229..34320 | Clytia hemisphaerica | exon |
| TCONS_00026025-exon-sc0000560-1491911889:36182..36418 | TCONS_00026025-exon-sc0000560-1491911889:36182..36418 | Clytia hemisphaerica | exon |
| TCONS_00026025-exon-sc0000560-1510915933:36182..36418 | TCONS_00026025-exon-sc0000560-1510915933:36182..36418 | Clytia hemisphaerica | exon |
| TCONS_00026025-exon-sc0000560-1575043694:36182..36418 | TCONS_00026025-exon-sc0000560-1575043694:36182..36418 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000560 | supercontig | sc0000560:33642..36418 + |
Blast
The following BLAST results are available for this feature:
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