TCONS_00026016 (transcript) - C. hemisphaerica

Overview
NameTCONS_00026016
Unique NameTCONS_00026016
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length518

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00026016 ID=TCONS_00026016|Name=TCONS_00026016|organism=Clytia hemisphaerica|type=transcript|length=518bp
tacaaacatcatacttaatgaccctgtcaatatttttgtcaaatagtgtc
actttgtcaagaaaatgactggttacttcaaaggtcactttttagtattc
tgatttaacattctctacggtggagagagcagataagctcgataatccaa
atttatctggtcgccggtcgtggtcgctggtcgtggtcgccattattggt
cgatgtttagaaactccctatCCTAGCGTAGAGTCGTTTGTAAGTCGTTT
GTCGAGTGTTTGTAAACAAAGGGTAAGGAAAAAATAACATCTTTACCTTT
GACTGAAGGATCTTGTGACGTAAACATTACCACATCCACATAAAGATGAC
gtaatgaatttataataacgggcgttgaatcttTGAAAGGGGCGTAACGC
CATCATGTGATTTTGAACAAGCACAACATCCTCAACAATGAAACCATATA
ATCCTAATCTTCTTTTATGGTTATTATATTTTGTTATTCTGTTGTTGTCT
TTACTAATTCTCTGAAAG
Run BLAST on NCBI

transcript from alignment at sc0000559:201725..202242

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00026016 ID=TCONS_00026016|Name=TCONS_00026016|organism=Clytia hemisphaerica|type=transcript|length=518bp|location=Sequence derived from alignment at sc0000559:201725..202242 (Clytia hemisphaerica)
CTTTCAGAGAATTAGTAAAGACAACAACAGAATAACAAAATATAATAACC
ATAAAAGAAGATTAGGATTATATGGTTTCATTGTTGAGGATGTTGTGCTT
GTTCAAAATCACATGATGGCGTTACGCCCCTTTCAaagattcaacgcccg
ttattataaattcattacGTCATCTTTATGTGGATGTGGTAATGTTTACG
TCACAAGATCCTTCAGTCAAAGGTAAAGATGTTATTTTTTCCTTACCCTT
TGTTTACAAACACTCGACAAACGACTTACAAACGACTCTACGCTAGGata
gggagtttctaaacatcgaccaataatggcgaccacgaccagcgaccacg
accggcgaccagataaatttggattatcgagcttatctgctctctccacc
gtagagaatgttaaatcagaatactaaaaagtgacctttgaagtaaccag
tcattttcttgacaaagtgacactatttgacaaaaatattgacagggtca
ttaagtatgatgtttgta
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_014647XLOC_014647Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00026016-exon-sc0000559-1491911889:201725..202242TCONS_00026016-exon-sc0000559-1491911889:201725..202242Clytia hemisphaericaexon
TCONS_00026016-exon-sc0000559-1510915933:201725..202242TCONS_00026016-exon-sc0000559-1510915933:201725..202242Clytia hemisphaericaexon
TCONS_00026016-exon-sc0000559-1575043694:201725..202242TCONS_00026016-exon-sc0000559-1575043694:201725..202242Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000559supercontigsc0000559:201725..202242 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
6.36841	7.56875	9.97844	10.3229	3.24911	3.74334	10.5122	8.22164	8.19366	9.33017	10.073	12.5259	1.70024	1.79688	1.70639	3.12622	8.16558	10.2694	0.132545	1.56387	23.7747	24.6366	17.4819	20.7451	14.8426	17.4159	24.4539	22.2884	12.9875	10.8834
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00026016 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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