TCONS_00026010 (transcript) - C. hemisphaerica

Overview
NameTCONS_00026010
Unique NameTCONS_00026010
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length782

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00026010 ID=TCONS_00026010|Name=TCONS_00026010|organism=Clytia hemisphaerica|type=transcript|length=782bp
ATCAAATGTTTTTTGTTCGCAAGCcactaaaattcatttcaagattcgat
aaaaaataattttgttcttTAAATGATTAAATCCAGGTTCAGTGGACACT
ACACTTCTTTGGcccatcaaaacaaaaaagtgagACACTTGTTTTGATCG
AGATCTTCCAAAAGTCAAcagaatgtttttataaaaaatgtgccAATTTG
TCTTTGTCGTAGAGGTCTATGATTTGGTGTACGTAAAATTTTTTAGATCA
TCATAAATTTTCCATAAGCTTTAAAGTCTTTGAGAACTCACTTCAGGTAA
GTTCAACTGGTGGTCCAAACCTTTCCATGGTTTCACTTACTAAAGATAAA
AAATCCAAGAACGAGTTTGATGCAACACGCAAAATTCTAGCTTCTTTTGC
AGCAAAGTTGACATGAAGGATATTAGCCTCTAATTTTAATGTCTTTTTGC
AGCCTCCTCTGCTGGGTTCCTTATCTACCCTGAGTGTGTTGTATGCAATC
TCTGCATGTCTTTCTGTTGGGAATGGAATCCCCAAAACCATTGTGTAACC
ATCTTCGTCAGCCATAGTGTTGTTCTATTTTAACTACGAACTAGTAGTTT
TGGGAAAAGAATATGAAGTAATTATTTTATGGATATATTATAACAAAAAA
ACTGTATCACCAAATTTGATAGCCTGGGTTTCCGCACTGTAAACCattta
acagttttgtaataagtTTGTCTAGCGTTTACGGTTAAGGTTTATCTAGA
CCCGTCTGCATCTACATCTGATGATTGTTCGA
Run BLAST on NCBI

transcript from alignment at sc0000559:113596..114377

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00026010 ID=TCONS_00026010|Name=TCONS_00026010|organism=Clytia hemisphaerica|type=transcript|length=782bp|location=Sequence derived from alignment at sc0000559:113596..114377 (Clytia hemisphaerica)
TCGAACAATCATCAGATGTAGATGCAGACGGGTCTAGATAAACCTTAACC
GTAAACGCTAGACAAacttattacaaaactgttaaatGGTTTACAGTGCG
GAAACCCAGGCTATCAAATTTGGTGATACAGTTTTTTTGTTATAATATAT
CCATAAAATAATTACTTCATATTCTTTTCCCAAAACTACTAGTTCGTAGT
TAAAATAGAACAACACTATGGCTGACGAAGATGGTTACACAATGGTTTTG
GGGATTCCATTCCCAACAGAAAGACATGCAGAGATTGCATACAACACACT
CAGGGTAGATAAGGAACCCAGCAGAGGAGGCTGCAAAAAGACATTAAAAT
TAGAGGCTAATATCCTTCATGTCAACTTTGCTGCAAAAGAAGCTAGAATT
TTGCGTGTTGCATCAAACTCGTTCTTGGATTTTTTATCTTTAGTAAGTGA
AACCATGGAAAGGTTTGGACCACCAGTTGAACTTACCTGAAGTGAGTTCT
CAAAGACTTTAAAGCTTATGGAAAATTTATGATGATCTAAAAAATTTTAC
GTACACCAAATCATAGACCTCTACGACAAAGACAAATTggcacatttttt
ataaaaacattctgTTGACTTTTGGAAGATCTCGATCAAAACAAGTGTct
cacttttttgttttgatgggCCAAAGAAGTGTAGTGTCCACTGAACCTGG
ATTTAATCATTTAaagaacaaaattattttttatcgaatcttgaaatgaa
ttttagtgGCTTGCGAACAAAAAACATTTGAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_014641XLOC_014641Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00026010-exon-sc0000559-1491911889:113596..114377TCONS_00026010-exon-sc0000559-1491911889:113596..114377Clytia hemisphaericaexon
TCONS_00026010-exon-sc0000559-1510915933:113596..114377TCONS_00026010-exon-sc0000559-1510915933:113596..114377Clytia hemisphaericaexon
TCONS_00026010-exon-sc0000559-1575043694:113596..114377TCONS_00026010-exon-sc0000559-1575043694:113596..114377Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000559supercontigsc0000559:113596..114377 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
44.084	40.8153	42.1326	40.4658	16.4489	12.0744	21.8907	21.3881	20.7136	12.667	15.1177	14.7623	14.083	16.6352	17.1219	19.5817	25.8893	21.724	15.6646	18.1826	17.5401	13.4025	31.0232	27.8819	8.24305	9.49255	13.9234	9.87609	13.8131	16.3139
Blast
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BLAST of TCONS_00026010 vs. Swiss-Prot (Human)
Match: LAGE3 (EKC/KEOPS complex subunit LAGE3 OS=Homo sapiens GN=LAGE3 PE=1 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 2.696e-16
Identity = 37/82 (45.12%), Postives = 51/82 (62.20%), Query Frame = -2 
Query:  302 YTMVLGIPFPTERHAEIAYNTLRVDKEPSRGGCKKTLKLEANILHVNFAAKEARILRVASNSFLDFLSLVSETMERFGPPVE 547
            +   L +PFPT   AEIA+ +L  D EP +    K L +   IL V + A++ R+LR++  +FLD LSLV  TM+RFGPPV 
Sbjct:   61 HIFTLSVPFPTPLEAEIAHGSLAPDAEPHQRVVGKDLTVSGRILVVRWKAEDCRLLRISVINFLDQLSLVVRTMQRFGPPVS 142
The following BLAST results are available for this feature:
BLAST of TCONS_00026010 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
LAGE32.696e-1645.12EKC/KEOPS complex subunit LAGE3 OS=Homo sapiens GN... [more]
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