TCONS_00026007 (transcript) - C. hemisphaerica

Overview
NameTCONS_00026007
Unique NameTCONS_00026007
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length306

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00026007 ID=TCONS_00026007|Name=TCONS_00026007|organism=Clytia hemisphaerica|type=transcript|length=306bp
GGAAGGaccattttcaaaagcatgGCAAAACAGCGATGCCGTTTTGGTTG
TTGAAGAAAAAGAACTTCACGTTCATTCCATGATATTATCCCTGGCTTCA
CCTTACTTCGAAAAAATGTTCAATGGAAATTTCAAAGAATCGCAAACCAA
ACGAGTCACTTTGGAAGGGAAGTCTTTTGAGCTGATGGAGCAAATGTTGA
AGATCATTTATCCAAATGTTGAAAACGGTGAATTAGttgcCAGTGAGATG
TTGAAGGGACTCAATCAAATATCGGAAGAATTCATGGTGCCTTCCGTAAA
GAGTGC
Run BLAST on NCBI

protein sequence of TCONS_00026007-protein

>TCONS_00026007-protein ID=TCONS_00026007-protein|Name=TCONS_00026007-protein|organism=Clytia hemisphaerica|type=polypeptide|length=101bp
EGPFSKAWQNSDAVLVVEEKELHVHSMILSLASPYFEKMFNGNFKESQTK
RVTLEGKSFELMEQMLKIIYPNVENGELVASEMLKGLNQISEEFMVPSVK
S
Run BLAST on NCBI

transcript from alignment at sc0000559:218496..219441-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00026007 ID=TCONS_00026007|Name=TCONS_00026007|organism=Clytia hemisphaerica|type=transcript|length=946bp|location=Sequence derived from alignment at sc0000559:218496..219441- (Clytia hemisphaerica)
GGAAGGACCATTTTCAAAAGCATGGCAAAACAGCGATGCCGTTTTGGTTG
TTGAAGAAAAAGAACTTCACGTTCATTCCATGATATTATCCCTGGCTTCA
CCTTACTTCGAAAAAATGTTCAATGGAAATTTCAAAGAATCGCAAACCAA
ACGAGTCACTTTGGAAGGGAAGTCTTTTGAGCTGATGGAGCAAATGTTGA
AGATCATTTATCCAAATGTTGAAAACGGTGAATTAGGTATGAATTTTCTT
TTACATATCCACTTATTATTTAACACAGTATTCTTCTTAAAAGGTCCCGT
GGGGGGGGGGGGGGGTTTAAAAAAATTTTTTCCAGGTCAGCAAGGGCCCG
GGGGGGGGGGGGGGGTTTAAAAAAATTTTTTCCAGGTCAGCAAGGGCCCG
GGGGGGGGGGGGGGGTTTAAAAAAATTTTTTCCAGGTCAGCAAGGGCCCG
GGGGGGGGGGGGGGGTTTTAAAGATCCTTTTCCAAGTTTCCCAAAGTGCA
ATGTGAGGGTCGAAATGAGCAAAGTTGAGAAAGAGCGCATTCTAAGGGTG
TAAAATAGCGAATATCTGGTCATATTTTGCCGTAAATGGACAAAGATTTT
CAAGAAAATGCAAAGCTTATTTATCTACAAGCTCGGTATTATATCTTAGT
TTTTGCCGAGATTTTAAACGTCCCTCTCAAAGGGGCAGCTCCTACCGTTG
GAAAAGATTACTCCAATTTGGGTAAATTTTCTCTGCACTGCAAGTATCCG
ATTTGAAAGGTCTAATTTTTGGCCGCACATACGGAAGTTTTTAGATCAAG
TGCTCCCCCACAATCCACAATACATCCCCCCACGGGACGTGTCTATTTAA
AATAAGATTTAAAAATTTATTTTCAGTTGCCAGTGAGATGTTGAAGGGAC
TCAATCAAATATCGGAAGAATTCATGGTGCCTTCCGTAAAGAGTGC

Coding sequence (CDS) from alignment at sc0000559:218496..219441-

>TCONS_00026007 ID=TCONS_00026007|Name=TCONS_00026007|organism=Clytia hemisphaerica|type=CDS|length=606bp|location=Sequence derived from alignment at sc0000559:218496..219441- (Clytia hemisphaerica)
TTGCCAGTGAGATGTTGAAGGGACTCAATCAAATATCGGAAGAATTCATG
GTGCCTTCCGTAAAGAGTGAAGGACCATTTTCAAAAGCATGGCAAAACAG
CGATGCCGTTTTGGTTGTTGAAGAAAAAGAACTTCACGTTCATTCCATGA
TATTATCCCTGGCTTCACCTTACTTCGAAAAAATGTTCAATGGAAATTTC
AAAGAATCGCAAACCAAACGAGTCACTTTGGAAGGGAAGTCTTTTGAGCT
GATGGAGCAAATGTTGAAGATCATTTATCCAAATGTTGAAAACGGTGAAT
TAGTTGCCAGTGAGATGTTGAAGGGACTCAATCAAATATCGGAAGAATTC
ATGGTGCCTTCCGTAAAGAGTGAAGGACCATTTTCAAAAGCATGGCAAAA
CAGCGATGCCGTTTTGGTTGTTGAAGAAAAAGAACTTCACGTTCATTCCA
TGATATTATCCCTGGCTTCACCTTACTTCGAAAAAATGTTCAATGGAAAT
TTCAAAGAATCGCAAACCAAACGAGTCACTTTGGAAGGGAAGTCTTTTGA
GCTGATGGAGCAAATGTTGAAGATCATTTATCCAAATGTTGAAAACGGTG
AATTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_014638XLOC_014638Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00026007-proteinTCONS_00026007-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00026007-exon-sc0000559-1575043694:219206..219441TCONS_00026007-exon-sc0000559-1575043694:219206..219441Clytia hemisphaericaexon
TCONS_00026007-exon-sc0000559-1575043694:218496..218565TCONS_00026007-exon-sc0000559-1575043694:218496..218565Clytia hemisphaericaexon
TCONS_00026007-exon-sc0000559-1510915933:219206..219441TCONS_00026007-exon-sc0000559-1510915933:219206..219441Clytia hemisphaericaexon
TCONS_00026007-exon-sc0000559-1510915933:218496..218565TCONS_00026007-exon-sc0000559-1510915933:218496..218565Clytia hemisphaericaexon
TCONS_00026007-exon-sc0000559-1491911889:219206..219441TCONS_00026007-exon-sc0000559-1491911889:219206..219441Clytia hemisphaericaexon
TCONS_00026007-exon-sc0000559-1491911889:218496..218565TCONS_00026007-exon-sc0000559-1491911889:218496..218565Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000559supercontigsc0000559:218496..219441 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.356415	0	0.809739	0	0.389488	0.469901	0.879831	0.307995	2.19344	1.11088	0.331327	4.50884	1.03369	13.605	7.83828	14.2214	10.9585	8.40771	6.17173	3.97028	2.0684	1.67627	1.30766	0.392415	0.350221	10.0003	4.69131	4.2808	1.65326
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000210BTB/POZ_dom
IPR011333SKP1/BTB/POZ
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00026007 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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