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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00025980 ID=TCONS_00025980|Name=TCONS_00025980|organism=Clytia hemisphaerica|type=transcript|length=2497bp
CTGGGGGTCTATAAACtcgagccaaattgaaatatccaattaaatttgag
agatggcccaaaatcgactttctcgcccgaaatCCAAATtccgaaaaacg
aggaaataagcttaattctcaatagatttctaCCATCATTGTAGATAGGC
ATTTATAAGCTTGCTCCAGCAAAAAGAAAGagaagtgaagcaaaaatttg
actttataaatttcgtgccgatggatttGTTTTCAGGGCACgatatcaaa
aaaagtaggtggcaaacgctatttcgcatctctcaaacctgcgaaattgc
ttgttgtcacgtgatttctttccaaaacttgcttcacttcaCGATAAAGG
CCGCAGATCTAGCTATTCGGgttttacagatctgtggtcaAACTTCTTGA
AAAAGAAGGAGTAGTAATAGACACATAGAAATCTATAAACGTGTAAATTC
TTAGTTTGACAAACCTATGCAATTACGTGatattaaaaactaaaaatccT
AAGTAAAATAATTGCTATACTTCAAAAGTTCGACGAAAGAACATCCATTA
TTGATTGGTTATTTAAAATGATAAACTAATGTCAATGTTTGAAAACAGCC
ATTGCAGCCTTGACTAGGTCAGGGAAGTTTGGGGATCCATACCCAGTGAC
AGGATCAAAGCCTTCAGTAGCACAGAAACCTTTATCGTGTGTAAGACAGC
CTTCGTTGCAACCACTGGTAACATCATAGAAAGCTTGTGGATTCTTGTAA
ATAAATGGGTTGAGGAATCCCATGACCGGCTTATTGGCATTAAGTCGGTG
CTCGTTTACCATGCTAATGATACCGGCGACGGATGGGGTCGAAGCGGAGG
TGCCCATGACCCCTGGAACTGGCACTCGATTATTGACGACCCAGAAATGA
CGACATAAAGCAGCGATGTCGGGGTAAGCACGGCCTGTTTTGTTGAAGAG
ATTTTGTGGTGGGACGCCTTCTGTATGCATATAGGCTGCTACTGCATCTG
TTTGGTATTTAGGTTGATCGAAAACATTACTGAAACCTCCGCCACTAATC
TCGTAGGCGAATTCAGGACCAACTGTGAAAGGGTTCGAGAATCCAGTACC
ACCAACTCCAGTAATGTAAGGACTGGAGACTGGGAATTGCGGtgaaaatt
ttcctttcttGCATGCTGCTCCATCGTCGCCACTGGCAAATAAAATTGTG
ATTCCACGAACCCCAGCTTTCATGAATTCAGTGTTTACGCGTTGCATGTA
TGGAACCGAAAGTGAACTTTCAACATCTCCGTAGCTGACACTGTGGACGG
GCGGCACTTCTTTGGTGCTTGCGACGTTTTGGAGCCAGAGAAGGAAGGGT
TCTTGATTGTCGTGACGACCAGCTGTACTCCAGAACCATGTAGTAATATT
AGCTCCTGTTCCCATGATGTATTGGGTATCAAGGCTAGCTTCGATTCCAG
ATTTAGCACCATTGGGTCCAATAACTTTATTAATTTCAGATTGATgtgta
aaatcatttttcacaAACATTGACATGAATTCACCTAAATCagcatttga
aaaatattgttctaAAAATTGTGCAACGACTTGTGAGTTGTTTGGGTGTG
ATCCGATATCGTCAGTAGTAAGGTTGTAACGTTGTCGTAGGATCTTTGGA
TAAACACCAACATGTACACCTCGGTTGTGAGCATTCACTTCAGGCATATC
TTCAATTTTGGTCTTCAGCCAGTTGACAGCAGGGAACCGATGCACTCCAC
CCACGAAGTCCAAATATTCAGCAATATATGCGTGGATGTAATATCGGCTT
GCTGATCGGATAACTTTCTTATGATATTTATCATGTCTGAAGTAGAAGAA
AACAGCTCCTGTAAGGATCTCTTCAGCTGTTTTACACGACATACGACAGT
TCATGTAATCTCGGTTCGCAACCAAATCACAGTCAAATACACCGTGATTT
GCCAGCCATTTCTCAATAAGCGTAATCGTTTCGTAAGATGGTGCGATCAT
GTCGGTAATCTCATCAGCTGAGAGATATTTGCCATAGAATGGTGAATCAG
GATCGGATACTTTCCAGAAAAGCTCTTCGAATTGTTGAAGGTTCTCTTGT
TTCAAGGCGAAAGATAGCTCAATGATTTTGTGTGATTCAACGCGCTCCAA
TCTTTCCCAACCTTCATCCTGCCAATAGTCTATAGACTGGTCCGCCTCTA
ACGAAGAGTAGACTACAGCCTCGAGAGGTGTACAACAGCATATTAACAGT
AAAAGGCCAAGCCCTTTCATATTtctgcaaaaaatgtttttgaaaacgcG
AAACAGTTTCAGCTCTCCTACACAACTTGAAGGTGAAGCGAGCAATAAAc
tgatttgttttgattcaaattttgaattataaTGTATTATTTACACAAGA
CTGTCATGTGATAGAATAAAGCTCTATTCAGACCACAATCATGTCATAAG
GCCTGTGATACATTTGAATACATGAAACTTAATCAGCTTAACAGAAC Run BLAST on NCBI protein sequence of Secreted tripeptidyl peptidase >TCONS_00025980-protein ID=TCONS_00025980-protein|Name=Secreted tripeptidyl peptidase|organism=Clytia hemisphaerica|type=polypeptide|length=562bp
MKGLGLLLLICCCTPLEAVVYSSLEADQSIDYWQDEGWERLERVESHKII
ELSFALKQENLQQFEELFWKVSDPDSPFYGKYLSADEITDMIAPSYETIT
LIEKWLANHGVFDCDLVANRDYMNCRMSCKTAEEILTGAVFFYFRHDKYH
KKVIRSASRYYIHAYIAEYLDFVGGVHRFPAVNWLKTKIEDMPEVNAHNR
GVHVGVYPKILRQRYNLTTDDIGSHPNNSQVVAQFLEQYFSNADLGEFMS
MFVKNDFTHQSEINKVIGPNGAKSGIEASLDTQYIMGTGANITTWFWSTA
GRHDNQEPFLLWLQNVASTKEVPPVHSVSYGDVESSLSVPYMQRVNTEFM
KAGVRGITILFASGDDGAACKKGKFSPQFPVSSPYITGVGGTGFSNPFTV
GPEFAYEISGGGFSNVFDQPKYQTDAVAAYMHTEGVPPQNLFNKTGRAYP
DIAALCRHFWVVNNRVPVPGVMGTSASTPSVAGIISMVNEHRLNANKPVM
GFLNPFIYKNPQAFYDVTSGCNEGCLTHDKGFCATEGFDPVTGYGSPNFP
DLVKAAMAVFKH Run BLAST on NCBI transcript from alignment at sc0000556:141460..143956 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00025980 ID=TCONS_00025980|Name=TCONS_00025980|organism=Clytia hemisphaerica|type=transcript|length=2497bp|location=Sequence derived from alignment at sc0000556:141460..143956 (Clytia hemisphaerica)
GTTCTGTTAAGCTGATTAAGTTTCATGTATTCAAATGTATCACAGGCCTT
ATGACATGATTGTGGTCTGAATAGAGCTTTATTCTATCACATGACAGTCT
TGTGTAAATAATACAttataattcaaaatttgaatcaaaacaaatcagTT
TATTGCTCGCTTCACCTTCAAGTTGTGTAGGAGAGCTGAAACTGTTTCgc
gttttcaaaaacattttttgcagaAATATGAAAGGGCTTGGCCTTTTACT
GTTAATATGCTGTTGTACACCTCTCGAGGCTGTAGTCTACTCTTCGTTAG
AGGCGGACCAGTCTATAGACTATTGGCAGGATGAAGGTTGGGAAAGATTG
GAGCGCGTTGAATCACACAAAATCATTGAGCTATCTTTCGCCTTGAAACA
AGAGAACCTTCAACAATTCGAAGAGCTTTTCTGGAAAGTATCCGATCCTG
ATTCACCATTCTATGGCAAATATCTCTCAGCTGATGAGATTACCGACATG
ATCGCACCATCTTACGAAACGATTACGCTTATTGAGAAATGGCTGGCAAA
TCACGGTGTATTTGACTGTGATTTGGTTGCGAACCGAGATTACATGAACT
GTCGTATGTCGTGTAAAACAGCTGAAGAGATCCTTACAGGAGCTGTTTTC
TTCTACTTCAGACATGATAAATATCATAAGAAAGTTATCCGATCAGCAAG
CCGATATTACATCCACGCATATATTGCTGAATATTTGGACTTCGTGGGTG
GAGTGCATCGGTTCCCTGCTGTCAACTGGCTGAAGACCAAAATTGAAGAT
ATGCCTGAAGTGAATGCTCACAACCGAGGTGTACATGTTGGTGTTTATCC
AAAGATCCTACGACAACGTTACAACCTTACTACTGACGATATCGGATCAC
ACCCAAACAACTCACAAGTCGTTGCACAATTTTtagaacaatatttttca
aatgctGATTTAGGTGAATTCATGTCAATGTTtgtgaaaaatgattttac
acATCAATCTGAAATTAATAAAGTTATTGGACCCAATGGTGCTAAATCTG
GAATCGAAGCTAGCCTTGATACCCAATACATCATGGGAACAGGAGCTAAT
ATTACTACATGGTTCTGGAGTACAGCTGGTCGTCACGACAATCAAGAACC
CTTCCTTCTCTGGCTCCAAAACGTCGCAAGCACCAAAGAAGTGCCGCCCG
TCCACAGTGTCAGCTACGGAGATGTTGAAAGTTCACTTTCGGTTCCATAC
ATGCAACGCGTAAACACTGAATTCATGAAAGCTGGGGTTCGTGGAATCAC
AATTTTATTTGCCAGTGGCGACGATGGAGCAGCATGCaagaaaggaaaat
tttcaCCGCAATTCCCAGTCTCCAGTCCTTACATTACTGGAGTTGGTGGT
ACTGGATTCTCGAACCCTTTCACAGTTGGTCCTGAATTCGCCTACGAGAT
TAGTGGCGGAGGTTTCAGTAATGTTTTCGATCAACCTAAATACCAAACAG
ATGCAGTAGCAGCCTATATGCATACAGAAGGCGTCCCACCACAAAATCTC
TTCAACAAAACAGGCCGTGCTTACCCCGACATCGCTGCTTTATGTCGTCA
TTTCTGGGTCGTCAATAATCGAGTGCCAGTTCCAGGGGTCATGGGCACCT
CCGCTTCGACCCCATCCGTCGCCGGTATCATTAGCATGGTAAACGAGCAC
CGACTTAATGCCAATAAGCCGGTCATGGGATTCCTCAACCCATTTATTTA
CAAGAATCCACAAGCTTTCTATGATGTTACCAGTGGTTGCAACGAAGGCT
GTCTTACACACGATAAAGGTTTCTGTGCTACTGAAGGCTTTGATCCTGTC
ACTGGGTATGGATCCCCAAACTTCCCTGACCTAGTCAAGGCTGCAATGGC
TGTTTTCAAACATTGACATTAGTTTATCATTTTAAATAACCAATCAATAA
TGGATGTTCTTTCGTCGAACTTTTGAAGTATAGCAATTATTTTACTTAgg
atttttagtttttaatatCACGTAATTGCATAGGTTTGTCAAACTAAGAA
TTTACACGTTTATAGATTTCTATGTGTCTATTACTACTCCTTCTTTTTCA
AGAAGTTtgaccacagatctgtaaaacCCGAATAGCTAGATCTGCGGCCT
TTATCGtgaagtgaagcaagttttggaaagaaatcacgtgacaacaagca
atttcgcaggtttgagagatgcgaaatagcgtttgccacctacttttttt
gatatcGTGCCCTGAAAACaaatccatcggcacgaaatttataaagtcaa
atttttgcttcacttctCTTTCTTTTTGCTGGAGCAAGCTTATAAATGCC
TATCTACAATGATGGtagaaatctattgagaattaagcttatttcctcgt
ttttcggaATTTGGatttcgggcgagaaagtcgattttgggccatctctc
aaatttaattggatatttcaatttggctcgaGTTTATAGACCCCCAG Coding sequence (CDS) from alignment at sc0000556:141460..143956 >TCONS_00025980 ID=TCONS_00025980|Name=TCONS_00025980|organism=Clytia hemisphaerica|type=CDS|length=1689bp|location=Sequence derived from alignment at sc0000556:141460..143956 (Clytia hemisphaerica)
ATGAAAGGGCTTGGCCTTTTACTGTTAATATGCTGTTGTACACCTCTCGA
GGCTGTAGTCTACTCTTCGTTAGAGGCGGACCAGTCTATAGACTATTGGC
AGGATGAAGGTTGGGAAAGATTGGAGCGCGTTGAATCACACAAAATCATT
GAGCTATCTTTCGCCTTGAAACAAGAGAACCTTCAACAATTCGAAGAGCT
TTTCTGGAAAGTATCCGATCCTGATTCACCATTCTATGGCAAATATCTCT
CAGCTGATGAGATTACCGACATGATCGCACCATCTTACGAAACGATTACG
CTTATTGAGAAATGGCTGGCAAATCACGGTGTATTTGACTGTGATTTGGT
TGCGAACCGAGATTACATGAACTGTCGTATGTCGTGTAAAACAGCTGAAG
AGATCCTTACAGGAGCTGTTTTCTTCTACTTCAGACATGATAAATATCAT
AAGAAAGTTATCCGATCAGCAAGCCGATATTACATCCACGCATATATTGC
TGAATATTTGGACTTCGTGGGTGGAGTGCATCGGTTCCCTGCTGTCAACT
GGCTGAAGACCAAAATTGAAGATATGCCTGAAGTGAATGCTCACAACCGA
GGTGTACATGTTGGTGTTTATCCAAAGATCCTACGACAACGTTACAACCT
TACTACTGACGATATCGGATCACACCCAAACAACTCACAAGTCGTTGCAC
AATTTTtagaacaatatttttcaaatgctGATTTAGGTGAATTCATGTCA
ATGTTtgtgaaaaatgattttacacATCAATCTGAAATTAATAAAGTTAT
TGGACCCAATGGTGCTAAATCTGGAATCGAAGCTAGCCTTGATACCCAAT
ACATCATGGGAACAGGAGCTAATATTACTACATGGTTCTGGAGTACAGCT
GGTCGTCACGACAATCAAGAACCCTTCCTTCTCTGGCTCCAAAACGTCGC
AAGCACCAAAGAAGTGCCGCCCGTCCACAGTGTCAGCTACGGAGATGTTG
AAAGTTCACTTTCGGTTCCATACATGCAACGCGTAAACACTGAATTCATG
AAAGCTGGGGTTCGTGGAATCACAATTTTATTTGCCAGTGGCGACGATGG
AGCAGCATGCaagaaaggaaaattttcaCCGCAATTCCCAGTCTCCAGTC
CTTACATTACTGGAGTTGGTGGTACTGGATTCTCGAACCCTTTCACAGTT
GGTCCTGAATTCGCCTACGAGATTAGTGGCGGAGGTTTCAGTAATGTTTT
CGATCAACCTAAATACCAAACAGATGCAGTAGCAGCCTATATGCATACAG
AAGGCGTCCCACCACAAAATCTCTTCAACAAAACAGGCCGTGCTTACCCC
GACATCGCTGCTTTATGTCGTCATTTCTGGGTCGTCAATAATCGAGTGCC
AGTTCCAGGGGTCATGGGCACCTCCGCTTCGACCCCATCCGTCGCCGGTA
TCATTAGCATGGTAAACGAGCACCGACTTAATGCCAATAAGCCGGTCATG
GGATTCCTCAACCCATTTATTTACAAGAATCCACAAGCTTTCTATGATGT
TACCAGTGGTTGCAACGAAGGCTGTCTTACACACGATAAAGGTTTCTGTG
CTACTGAAGGCTTTGATCCTGTCACTGGGTATGGATCCCCAAACTTCCCT
GACCTAGTCAAGGCTGCAATGGCTGTTTTCAAACATTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00025980-exon-sc0000556-1491911889:141460..143956 | TCONS_00025980-exon-sc0000556-1491911889:141460..143956 | Clytia hemisphaerica | exon |
| TCONS_00025980-exon-sc0000556-1510915933:141460..143956 | TCONS_00025980-exon-sc0000556-1510915933:141460..143956 | Clytia hemisphaerica | exon |
| TCONS_00025980-exon-sc0000556-1575043694:141460..143956 | TCONS_00025980-exon-sc0000556-1575043694:141460..143956 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| sc0000556 | supercontig | sc0000556:141460..143956 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0008236 | serine-type peptidase activity |
| GO:0004252 | serine-type endopeptidase activity |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006508 | proteolysis |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006508 |
proteolysis |
| molecular_function |
GO:0004252 |
serine-type endopeptidase activity |
| molecular_function |
GO:0008236 |
serine-type peptidase activity |
Blast
BLAST of TCONS_00025980 vs. Swiss-Prot (Human)
Match: TPP1 (Tripeptidyl-peptidase 1 OS=Homo sapiens GN=TPP1 PE=1 SV=2) HSP 1 Score: 518.079 bits (1333), Expect = 5.384e-174 Identity = 258/532 (48.50%), Postives = 357/532 (67.11%), Query Frame = -3
Query: 600 GWERLERVESHKIIELSFALKQENLQQFEELFWKVSDPDSPFYGKYLSADEITDMIAPSYETITLIEKWLANHGVFDCDLVANRDYMNCRMSCKTAEEILTGAVFFYFRHDKYHKKVIRSASRYYIHAYIAEYLDFVGGVHRFPAVNWLKTKIEDMPEVNAHNRGVHVGVYPKILRQRYNLTTDDIGS-HPNNSQVVAQFLEQYFSNADLGEFMSMFVKNDFTHQSEINKVIGPNG-AKSGIEASLDTQYIMGTGANITTWFWSTAGRHDNQEPFLLWLQNVASTKEVPPVHSVSYGDVESSLSVPYMQRVNTEFMKAGVRGITILFASGDDGAAC----KKGKFSPQFPVSSPYITGVGGTGFSNPFTVGPEFAYEISGGGFSNVFDQPKYQTDAVAAYMHTEGVPPQNL-FNKTGRAYPDIAALCRHFWVVNNRVPVPGVMGTSASTPSVAGIISMVNEHRLNANKPVMGFLNPFIYKNPQA-FYDVTSGCNEGCLTHD---KGFCATEGFDPVTGYGSPNFPDLVKAAM 2162
GW L R + + + L+FAL+Q+N+++ EL VSDP SP YGKYL+ + + D++ PS T+ ++KWL G C V +D++ C +S + AE +L GA F ++ V+RS Y + +A ++DFVGG+HRFP + L+ + E P+V G+H+GV P ++R+RYNLT+ D+GS NNSQ AQFLEQYF ++DL +FM +F N F HQ+ + +V+G G ++GIEASLD QY+M GANI+TW +S+ GRH+ QEPFL WL +++ +P VH+VSYGD E SLS Y+QRVNTE MKA RG+T+LFASGD GA C + +F P FP SSPY+T VGGT F PF + E ISGGGFSNVF +P YQ +AV ++ + P + FN +GRAYPD+AAL +WVV+NRVP+P V GTSASTP GI+S++NEHR+ + +P +GFLNP +Y+ A +DVT GC+E CL + +GFC+ G+DPVTG+G+PNFP L+K +
Sbjct: 34 GWVSLGRADPEEELSLTFALRQQNVERLSELVQAVSDPSSPQYGKYLTLENVADLVRPSPLTLHTVQKWLLAAGAQKCHSVITQDFLTCWLSIRQAELLLPGAEFHHYVGGPTETHVVRSPHPYQLPQALAPHVDFVGGLHRFPPTSSLRQRPE--PQVTG-TVGLHLGVTPSVIRKRYNLTSQDVGSGTSNNSQACAQFLEQYFHDSDLAQFMRLFGGN-FAHQASVARVVGQQGRGRAGIEASLDVQYLMSAGANISTWVYSSPGRHEGQEPFLQWLMLLSNESALPHVHTVSYGDDEDSLSSAYIQRVNTELMKAAARGLTLLFASGDSGAGCWSVSGRHQFRPTFPASSPYVTTVGGTSFQEPFLITNEIVDYISGGGFSNVFPRPSYQEEAVTKFLSSSPHLPPSSYFNASGRAYPDVAALSDGYWVVSNRVPIPWVSGTSASTPVFGGILSLINEHRILSGRPPLGFLNPRLYQQHGAGLFDVTRGCHESCLDEEVEGQGFCSGPGWDPVTGWGTPNFPALLKTLL 561
The following BLAST results are available for this feature:
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