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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00025977 ID=TCONS_00025977|Name=TCONS_00025977|organism=Clytia hemisphaerica|type=transcript|length=1428bp
AGGTGaggttattttgaaaattaatcgGCGGAATCTTAGATCTACTTCCC
GTTGAAATAACCTTACGTTTATCCTATGAAACCAAACTTTGAGCAAGGAA
ATAGCTAAGGCTAATTGATACTGGAGTGTAGAATTAAACTTACCAAGAAT
TAGACAAGCAATCAAACTTCCTTCGTTTGAAACGCTGCATGGAAAATGTT
CGCTTAACGATCCAGTCAACATGTTAAAAGTCATTACAAGGTCTTGTATT
ACAAATCCTCCACATTTATAAAAATGATGTGTCAAACGCCCGGCACAGTA
GACAGAAAAGAAGGTTTTGAAGGAATGTGTGTCTGCGTTTAAAACAATGT
ATTTGTCCAGTGACAACATTCGTTCTCCATCCTCAGCTGTAAACATAAGA
CCGGCAACACTCTCGTTGTTCGGGTTAATGACACAACTGTCGACAACCAA
TTCCAATTCACGACACGCTCTTAACGGACATGAATATAAACACGAGTCAG
AGAAAACGTACAGGAAGTCATATGATGCAGCCACGTCGGTTACTTTCAAT
TCATTTTGCAGGTCACCTATCACGAGATTACTTTCAAGTTGGATTTTACT
GTCTGGCCAATCGAGAACATTAATAATAGAATAAAGCTGTGTCTTCTTTA
GCCAGACAAGAACGGAAGAAGTTTTATTTCCGATAACGTGTACATGGAGC
TCTCGCAAGTTATCAAACGCAGTGTAAACCAGCTCTAAATCCGAATCATC
TGTTTCTTTCGTTAGACAAGTCTTTGAGAGCCGAACCAAAAAAGCTCGGT
TTTTAGTCTTGCATTGTAAAGCAACCAAGTAGACAAAAGGTTGCACTAAT
AGAGCACTTTGTACTGAAATACACGAATCCCCCGTTACATTTTTAAGATT
GATCTTGACAAGAGCACAATTTGAGGGTCCACTTTCTTCAGAGAATATCG
CATTTGCTTGCATTACATCATCAAGTAACGCCCATTCGACAACTGTTGTG
TTTCCATGGGATACTGTTTGATAGGACATCGGGTTTGGACCAAGGTTTTT
CGGTTTGTATAAGGAATCTTCGTAAAGTTCGGGGAAATATAAATTGCAGT
TGACAAAGATACATAATGATGCGAATAAGCATATGTATGAGAAATGGTTC
CACATTtagatgaaaaatatttttgttgaaatttgtaTAGTTTTTCCGTT
CTCAAATTGAAATCAAGGTATGTTTTAATGCCTGATTAAATTTAATTTCT
CTTTTCCATGTTCCTTTGATTTCTCCCTTGAATCTTCAAGCTTAAATGTG
TTCAAGAATGTTATAATGTATCTTCGATCCCCCAACGTACCCATCAATAT
GATAATCACACTATcaaattattttgtaaaaaccatgcatgtgctgaaaa
tgagtaaaatagTAGCCCCTTCTCTACA Run BLAST on NCBI protein sequence of TCONS_00025977-protein >TCONS_00025977-protein ID=TCONS_00025977-protein|Name=TCONS_00025977-protein|organism=Clytia hemisphaerica|type=polypeptide|length=385bp
MWNHFSYICLFASLCIFVNCNLYFPELYEDSLYKPKNLGPNPMSYQTVSH
GNTTVVEWALLDDVMQANAIFSEESGPSNCALVKINLKNVTGDSCISVQS
ALLVQPFVYLVALQCKTKNRAFLVRLSKTCLTKETDDSDLELVYTAFDNL
RELHVHVIGNKTSSVLVWLKKTQLYSIINVLDWPDSKIQLESNLVIGDLQ
NELKVTDVAASYDFLYVFSDSCLYSCPLRACRELELVVDSCVINPNNESV
AGLMFTAEDGERMLSLDKYIVLNADTHSFKTFFSVYCAGRLTHHFYKCGG
FVIQDLVMTFNMLTGSLSEHFPCSVSNEGSLIACLILGKFNSTLQYQLAL
AISLLKVWFHRINVRLFQREVDLRFRRLIFKITSP Run BLAST on NCBI transcript from alignment at sc0000556:65944..67371 Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00025977 ID=TCONS_00025977|Name=TCONS_00025977|organism=Clytia hemisphaerica|type=transcript|length=1428bp|location=Sequence derived from alignment at sc0000556:65944..67371 (Clytia hemisphaerica)
TGTAGAGAAGGGGCTActattttactcattttcagcacatgcatggtttt
tacaaaataatttgATAGTGTGATTATCATATTGATGGGTACGTTGGGGG
ATCGAAGATACATTATAACATTCTTGAACACATTTAAGCTTGAAGATTCA
AGGGAGAAATCAAAGGAACATGGAAAAGAGAAATTAAATTTAATCAGGCA
TTAAAACATACCTTGATTTCAATTTGAGAACGGAAAAACTAtacaaattt
caacaaaaatatttttcatctaAATGTGGAACCATTTCTCATACATATGC
TTATTCGCATCATTATGTATCTTTGTCAACTGCAATTTATATTTCCCCGA
ACTTTACGAAGATTCCTTATACAAACCGAAAAACCTTGGTCCAAACCCGA
TGTCCTATCAAACAGTATCCCATGGAAACACAACAGTTGTCGAATGGGCG
TTACTTGATGATGTAATGCAAGCAAATGCGATATTCTCTGAAGAAAGTGG
ACCCTCAAATTGTGCTCTTGTCAAGATCAATCTTAAAAATGTAACGGGGG
ATTCGTGTATTTCAGTACAAAGTGCTCTATTAGTGCAACCTTTTGTCTAC
TTGGTTGCTTTACAATGCAAGACTAAAAACCGAGCTTTTTTGGTTCGGCT
CTCAAAGACTTGTCTAACGAAAGAAACAGATGATTCGGATTTAGAGCTGG
TTTACACTGCGTTTGATAACTTGCGAGAGCTCCATGTACACGTTATCGGA
AATAAAACTTCTTCCGTTCTTGTCTGGCTAAAGAAGACACAGCTTTATTC
TATTATTAATGTTCTCGATTGGCCAGACAGTAAAATCCAACTTGAAAGTA
ATCTCGTGATAGGTGACCTGCAAAATGAATTGAAAGTAACCGACGTGGCT
GCATCATATGACTTCCTGTACGTTTTCTCTGACTCGTGTTTATATTCATG
TCCGTTAAGAGCGTGTCGTGAATTGGAATTGGTTGTCGACAGTTGTGTCA
TTAACCCGAACAACGAGAGTGTTGCCGGTCTTATGTTTACAGCTGAGGAT
GGAGAACGAATGTTGTCACTGGACAAATACATTGTTTTAAACGCAGACAC
ACATTCCTTCAAAACCTTCTTTTCTGTCTACTGTGCCGGGCGTTTGACAC
ATCATTTTTATAAATGTGGAGGATTTGTAATACAAGACCTTGTAATGACT
TTTAACATGTTGACTGGATCGTTAAGCGAACATTTTCCATGCAGCGTTTC
AAACGAAGGAAGTTTGATTGCTTGTCTAATTCTTGGTAAGTTTAATTCTA
CACTCCAGTATCAATTAGCCTTAGCTATTTCCTTGCTCAAAGTTTGGTTT
CATAGGATAAACGTAAGGTTATTTCAACGGGAAGTAGATCTAAGATTCCG
CcgattaattttcaaaataacctCACCT Coding sequence (CDS) from alignment at sc0000556:65944..67371 >TCONS_00025977 ID=TCONS_00025977|Name=TCONS_00025977|organism=Clytia hemisphaerica|type=CDS|length=1155bp|location=Sequence derived from alignment at sc0000556:65944..67371 (Clytia hemisphaerica)
ATGTGGAACCATTTCTCATACATATGCTTATTCGCATCATTATGTATCTT
TGTCAACTGCAATTTATATTTCCCCGAACTTTACGAAGATTCCTTATACA
AACCGAAAAACCTTGGTCCAAACCCGATGTCCTATCAAACAGTATCCCAT
GGAAACACAACAGTTGTCGAATGGGCGTTACTTGATGATGTAATGCAAGC
AAATGCGATATTCTCTGAAGAAAGTGGACCCTCAAATTGTGCTCTTGTCA
AGATCAATCTTAAAAATGTAACGGGGGATTCGTGTATTTCAGTACAAAGT
GCTCTATTAGTGCAACCTTTTGTCTACTTGGTTGCTTTACAATGCAAGAC
TAAAAACCGAGCTTTTTTGGTTCGGCTCTCAAAGACTTGTCTAACGAAAG
AAACAGATGATTCGGATTTAGAGCTGGTTTACACTGCGTTTGATAACTTG
CGAGAGCTCCATGTACACGTTATCGGAAATAAAACTTCTTCCGTTCTTGT
CTGGCTAAAGAAGACACAGCTTTATTCTATTATTAATGTTCTCGATTGGC
CAGACAGTAAAATCCAACTTGAAAGTAATCTCGTGATAGGTGACCTGCAA
AATGAATTGAAAGTAACCGACGTGGCTGCATCATATGACTTCCTGTACGT
TTTCTCTGACTCGTGTTTATATTCATGTCCGTTAAGAGCGTGTCGTGAAT
TGGAATTGGTTGTCGACAGTTGTGTCATTAACCCGAACAACGAGAGTGTT
GCCGGTCTTATGTTTACAGCTGAGGATGGAGAACGAATGTTGTCACTGGA
CAAATACATTGTTTTAAACGCAGACACACATTCCTTCAAAACCTTCTTTT
CTGTCTACTGTGCCGGGCGTTTGACACATCATTTTTATAAATGTGGAGGA
TTTGTAATACAAGACCTTGTAATGACTTTTAACATGTTGACTGGATCGTT
AAGCGAACATTTTCCATGCAGCGTTTCAAACGAAGGAAGTTTGATTGCTT
GTCTAATTCTTGGTAAGTTTAATTCTACACTCCAGTATCAATTAGCCTTA
GCTATTTCCTTGCTCAAAGTTTGGTTTCATAGGATAAACGTAAGGTTATT
TCAACGGGAAGTAGATCTAAGATTCCGCcgattaattttcaaaataacct
CACCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00025977-exon-sc0000556-1491911889:65944..67371 | TCONS_00025977-exon-sc0000556-1491911889:65944..67371 | Clytia hemisphaerica | exon |
| TCONS_00025977-exon-sc0000556-1510915933:65944..67371 | TCONS_00025977-exon-sc0000556-1510915933:65944..67371 | Clytia hemisphaerica | exon |
| TCONS_00025977-exon-sc0000556-1575043694:65944..67371 | TCONS_00025977-exon-sc0000556-1575043694:65944..67371 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000556 | supercontig | sc0000556:65944..67371 . |
Blast
The following BLAST results are available for this feature:
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