TCONS_00025959 (transcript) - C. hemisphaerica

Overview
NameTCONS_00025959
Unique NameTCONS_00025959
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2403

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00025959 ID=TCONS_00025959|Name=TCONS_00025959|organism=Clytia hemisphaerica|type=transcript|length=2403bp
TGCGCGTTTTTAGGTTTTGACCTGGCAAGAAGCTTCACAATGAAATAATT
TGCCTGGCTTTAATTTTAGCTTgacaaattttcctttttagcTCAGTTCA
TAACATTTTTTACTCCAGCATATAACAACAGCCTTCCTTTCTCAGGTCCA
AGACATCAAAGTAGCCCTCTGATGATATAATCAATATTTATTAACACTGG
TTGATAACATTTGCCTTTGGAATTAACCTTTATATAAACCCTGGAAGAAG
TTTCTCCATCCCAGTCAACGAAAcctttgatcagagtttttagAATCAGT
GATACCCTAATGATATCGCTACGCAATCTAGttcatttttatacaaaaaa
ttgaaaatggctCTTTTTGGCcctgtttttcttaactttggTCTGAGTGC
TATCATTTGGGTATTActtaaaaattctgaaaaaaattctaaaaactaTG
GTCAAAGATAGTGGATATAGCTGAGCCCTGGGTTTCAATACAGGTCAGTG
GCCCTTGGTTCTTAGGGAAAACTTCCCCATTGTTTTTATAGATCACCCTC
GCCAGAACCAATTTACAATTCGGAAGGCAAACGATTGAATACAAGAGAAT
ATAGGCTTCGAAAGAAGCTTGAAGAAGAACGTCATATATTGATCAAACAA
GCTGTTGAGGAGATTCCGAATTACAAGCCCCCTGCTGATTACAAACCACC
TGCTCAAAAGGTCAGTGACAAAGTTTTCATCCCACAAGAAAGGAATCCTG
CAGTAAATTTCATTGGTTTGCTTATCGGCCCAAGAGGGAACACACTCAAA
CGTCTTGAGTCGGAGACTGGTTGTAAAATCATTATCCGTGGTAAAGGATC
AGTCAAAGAAGGAAAAGTTGGGCGTGTACCTGGTCAGTTGATGCCCGGCG
AAGATGAACCCTTGCATGCCTTAATTACCGCCCCAACAGCTGCCGAGGTC
AAGAAGGGCGTAAAGGTGGTTACGGATATAgttaaagagggcgttgattg
TCCCGATGCGGCAAACGAGTTGAGAAGAAATCAATTGAGAGAGCTGGCAG
AATTGAATGGAACACTTATTGATGAAGAAATCATTAAATGTAAGAATTGT
GGAGCAACAGATCATCGTCATTGGGAATGTCAAGAACAAAAGAATATCAC
CAGTCAGATCACGTGTAACAAGTGTGGTGGTTATGGTCACGTCGCTGCTG
ATTGTCAAGTCAAAGGAAATAGCAGTTCTGGTCCAATGCAAACATTCTCA
GAGAAAGCTAAAATGGATAACGAGtACATGTCATTGATGGCGGAACTGGG
CGTGGACGCCCCACCACCTGCCAAAAAAGCTGCACCACCAAGTCTACCGG
AACCACCAAAGGAATCGCCGTCGGATCGCAAACCTCCAGAACCTTCACAT
TCAATGGGATATGGTGGACGAAAATTCGATCGAGAACCAAGAAGTAGCAA
ATGGGGACCTCCCAACGACAACAGTGGTCGAGGTGGTGGCGCCCCGAAGT
CCCTCATGGATATGAATTTCAATAGTAATTACCGTGGTGAACGACCTAGA
GGGCAAGCGCCAAATCAAGTAGGGTGGAATAACGGACCGAGAGGACCAAG
ACATGGTGGACCCCCGCGTGGAAATGCACCATGGCAACAAAACGGGCCTC
CACCAAGAGGACCCTCTAACTATAGTATGGGTCCACCACAGAACCAAGGA
CCTCCTCCAATGGGTGGCCCACCAATGCAGCAGCGACCTTGGGGTCAACA
GCCACCACCTACAGCATACCCTGGTCAATGGCAAGGTGCTTATGGAGGAT
ACAACCCTTATCAACAGCAACAACCGCAGCAACAACAGCCTCCACCACCG
TCCACTGCCTACCCAACTCCTCCATGGTCTCAACAACCACCCccaccacc
acctccaccaccatcATCAAGCTAAACGAACTCAGTAAGAGATACCATAT
CTCGCTGTCGAACATTAACCCTCAAATGAGTAATGAACTCGAAACTGGTG
GTCTTTTGGACGCCTCAAATGGACATCGTCCAATGGTGGCGTACAATAAC
ACACTCAAACGTCATTCGAACTATATCGGATATAATGGCTTTACCAGGAC
TTATCGGTGTCAATACATCGTAGAAACGTTATCATTCTTATCTACAAGAA
CTTAAGATCGCTCGGATTGCCTCCTGCTTTTTGACACATAATTACGGACG
AGAGCTGGTGTTATgtatatatgtttttttatgctaatgaaattttaaaa
tttcgttGTTTTGACACACTTATTTTTAACCAGtcgattttatgattttt
tcaacTAATACTTATTGTGACAAATACGATTTAAGTTTTCAATCtgggaa
ataaaaaatataaatgaaaaaagttctgttttaaaatttattggAAAGGT
AAA
Run BLAST on NCBI

transcript from alignment at sc0000556:130530..141348+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00025959 ID=TCONS_00025959|Name=TCONS_00025959|organism=Clytia hemisphaerica|type=transcript|length=10819bp|location=Sequence derived from alignment at sc0000556:130530..141348+ (Clytia hemisphaerica)
TGCGCGTTTTTAGGTTTTGACCTGGCAAGAAGCTTCACAATGAAATAATT
TGCCTGGCTTTAATTTTAGCTTgacaaattttcctttttagcTCAGTTCA
TAACATTTTTTACTCCAGCATATAACAACAGCCTTCCTTTCTCAGGTCCA
AGACATCAAAGTAGCCCTCTGATGATATAATCAATATTTATTAACACTGG
TTGATAACATTTGCCTTTGGAATTAACCTTTATATAAACCCTGGAAGAAG
TTTCTCCATCCCAGTCAACGAAAcctttgatcagagtttttagAATCAGT
GATACCCTAATGATATCGCTACGCAATCTAGttcatttttatacaaaaaa
ttgaaaatggctCTTTTTGGCcctgtttttcttaactttggTCTGAGTGC
TATCATTTGGGTATTActtaaaaattctgaaaaaaattctaaaaactaTG
GTCAAAGATAGTGGATATAGCTGAGCCCTGGGTTTCAATACAGGTCAGTG
GCCCTTGGTTCTTAGGGAAAACTTCCCCATTGTTTTTATAGATCACCCTC
GCCAGAACCAATTTACAATTCGGAAGGCAAACGATTGAATACAAGAGAAT
ATAGGCTTCGAAAGAAGCTTGAAGAAGAACGTCATATATTGATCAAACAA
GCTGTTGAGGAGATTCCGAATTACAAGCCCCCTGCTGATTACAAGTAAGT
AGACTTGAATACCTTTAAGTGGATCGTTTTCAGGGGGTTTAGGTTGCCca
ataaaaactttcaaatttacagaaaaatatTAGGCATAGACATGAAAATT
ACTAACCTATCATTCCTGATCAGCATACAAGTagtaattttgtaaaattt
gtttatttataatttgcttctgatttaaaaataatttagacAAATGGTAA
TCCCTGATTAAATAGACCAAATAGAATTCTGACTTGAGCAATTCCTTACC
TAGTTAACGTCCCCTGATTAATTTCCaaccaggacattcttattcgaAAC
CTCGAATTTTTAGGAATAGTTGCTTCCTCTAGCCCTTATAGCATAGTCCA
GAAAGGGGTCACTATCCTCCCATATCCTATAGCTTCCCCCTACACTAGGT
TCTTTCCCCTTTTAACATTTGGTGATACCCcctcaaatttttaaaatcct
aTCATAATTCAGTGATAAAGGAAGAATAAACACTGTAAATAAGCAAATAA
TAAGGAAATTTCAACTTGGTGTACACTTTGATGCAACGTAAAGTGGACTT
CTCTTAACCAAGCGAACTATGTTAAGACTTAATTTCCATTAGAAATAGAT
GATTAATATTTATTGCTCATTTTCCTTTTAGACCACCTGCTCAAAAGGTC
AGTGACAAAGTTTTCATCCCACAAGAAAGGAATCCTGCAGTAAATTTCAT
TGGTTTGCTTATCGGCCCAAGGTGAGTTTCTCTTTTAAATTTAGCTTTTA
ATATCATAAGTAGTATTTTGATTACAGAGTATTAATTTTTTGTATTAATT
GCTAGGTAttttcttaaccctattcaacctaggcttttaggggcggttca
gaactagggggggggcttttcctgtaccaccccttaacttttgagtaggt
cttttttgatgaaatttggcatacaagatccttgtcacataaggtaactt
ttaacaaaaatttcttttcactcatcatgcccaaagtgagcaaaaaccga
aaattttctttgttcttataaatagctattgtattctaacaaaggcttaa
gaaaaaagttgcctgagtttaaaatgtttattttatcctaaatattcaat
aaattacggtttaaacgatatatttgacataaaaaataaatttgcattGG
AAAAGTGTCTatgaatttacagaaaatttcatggcaaaagctgtattatt
tcaggagctattaccaataatttgacctccgaacagaaacaacgcccccc
ccccccccggNtattttgaagctaaataaaatttatgaatttacaGATAA
TTTCATTGCAAAAGCtgtattatttcaggagctattaccaataatttgac
ctccgaacagaaacaacgcccccccccctaggccgaatagggttaagata
TTCTGTAATTTTAATTCTAAGTTGTCTCAATTCATCCGATGTTGGGGTAT
TTCTGAAACATCATTCTCACTTTTTGTACATTCTTCTTTTACAGAGGGAA
CACACTCAAACGTCTTGAGTCGGAGGTAAGAAGTTGGATTATTGAATTTg
cttttcgtttttttctttgaattaaatAGATATATTCGCTTATGGAggga
agatttttttcttccctttCATAAGTTAAAATATCTGCATTCTCTAATAG
CGTTTTCATAGTTTTGATGGTGAATAGTGTTACAAATGAATGCTACATTA
AGAGAGTCTGTGCTGAAAATATGCTAAGCTTACTTTTTCTAGCTTTTGTA
TAAATCCCACAAGATACATCCTGAGGTCTTGTAATTCATAAAAGGCCAGC
GTCTGAGATTCAAAAAGTTCTTCTTAAAAACAGATTTTCGTAGGGAATCC
GTAAATCAGGGCAAAATGTTTTGTTATTATTCTCCTGTGAGGGTGTAAAA
TCGACAAGAAAAATTGCCTCTTGAATATCCTGCAGTTTTCGATTGAATCG
ATTCTTAGTTATGATGAAAGTTTACAGTCGACTcctaattcgaatttttt
tgtaattcgaagaaaaattgtaattatttaattatcgaTGTTTATTAGCA
TCGGTCCATTCAGTTTTGCTTTCTGCAACATCTAATAGCGCTCTCATTGT
GGTATGATCTGTGTTACAAAACGTGCGAGAGAAAAATATGTGTTGAAAAT
ATGTGAAATATTCACCATTGATTTTGCATAAATCCCACAAGAAACACTTG
TATGCTttaattttaattaaattttaatttcctTGTTTTAAAATCCTAGT
TCGATTACCGTTCTGCGCTATCTAATAGCACTTTCATCCTTTCTATGATT
TTGTGCTACAAAAAGTGCGAGAGAAAAATCTGTGTTGAAAATATGTGAAA
TATTTCCCAGTGATTTTGCATAAATCCCACAAGAAACACTTCTTTGCTTT
GTTTTAATTTCCTTGTTTTGAAACCCTAGTTCGATTACCTTTCTGCGCTA
TCTAATAGCACTTTCATCTATTGTATGATTTTGTGTTACAAAACGTGCAA
GAGAAAATCTGTgctgaaaatatgtaaaatatttCTCCAGTGATTTTGCA
TAAATCCCACAAGGAACACTTCTttgctttgttttaattttcttgttttg
aaaccCTAGTTCGAGTATCTTTCTGCGCTATCCAATAGCACTTTCATCTA
TTGTATGATTTTGTGTTACAAAACGTGCATTAGAAAATCTGTGTTGAAAA
TATGTGAAATATTTCTCCAGTGATTTTGCATAAATCCCACAAGAAACAAA
TTTCCAGTAATTGCTTTTTTAATATGCTTGTCTATCTGTTGGGTTGATCA
CTCAATATATGTCCGAAGTAttttaagttgatttttttctatccTTTAGA
CTGGTTGTAAAATCATTATCCGTGGTAAAGGATCAGTCAAAGAAGGAAAA
GTTGGGCGTGTACCTGGTCAGTTGATGCCCGGCGAAGATGAACCCTTGCA
TGCCTTAATTACCGCCCCAACAGCTGCCGAGGTCAAGAAGGGCGTAAAGG
TGGTTACGGATATAgttaaagagggcgttgattgTCCCGATGCGGCAAAC
GAGTTGAGAAGAAATCAATTGAGAGAGCTGGCAGAATTGAATGGAACACT
TATTGATGAAGAAATCATTAAGTATGCCTTAgttataaaagaaaatattg
tacACATCGGGCTGGTAGCTTGTTAAGAAACTGATCAATGTACTGAACTA
TCTGAAGAAGCCTCGACGAAGAATTTTTCGGACTTGCTTTTGCTTTACTG
TACTATCTGTTTGTTCTAGTTTTCTTAGATGGGTGGTCTGAGTAGGGTTA
AAGCACGCGATTTAACATTATATAGCTCTTCAAAAAgcacaaacttgtaa
aaattcTTTGGCTTAATTCTGATTGGTCAGTAGAAGTTCTCCATCGGGTC
TGTCTTACCAAAAACACCTGGACAAGGATTCTATCTAAAGTGAAGAAGGC
aaatctcatttttttataaaaaaagtcttATCTTTTGAGATTGGATCTTT
TGCCTCGATAGCAGCGACTTATAAAACTAATGATTCAGTGAAAACTAAAT
GAAGACTAATAACACTTATAAAAACGAGACAAATGCATTATTATCTATCC
TTCATCTAGATGTAAGAATTGTGGAGCAACAGATCATCGTCATTGGGAAT
GTCAAGAACAAAAGAATATCACCAGTCAGATCACGTGTAACAAGTGTGGT
GGTTATGGTCACGTCGCTGCTGATTGTCAAGTCAAAGGGTTAGTGAgaca
atagatcttatcggagtttttggtttttctaaaaaagctaTGCATTGTGA
GATTCTTTCGGGGGTATAACAATAGAAATGTCTTAGGAATTCTTTGTCCC
TGggaaaatggagaaaattgaTTGTTGTCGAACCCACAATGCattgctgt
ttttgaaaaatcaaaaactccgataaggtctattgaacTTATATTGAACT
ATTCCAGTCCGTTCACTTTCACCGTGGATAATGTTTTACAAACACTCTAT
TACCATTGTCTTTTATAGTTGAAAGAAAAGAGTTTGCGCTTGAAAGTCGT
AAACGCTTATCCATATGAAAATAATGGACATAAATTTTCACGCATGCGTT
AACAGCCAATTTTTCATCTGATGTTTCGATGGCATATTGGTGGTCACCTG
TTGCATTCTGTCTTACTTTCCTCTCTCTATTTCAGAAATAGCAGTTCTGG
TCCAATGCAAACATTCTCAGAGAAAGCTAAAATGGATAACGAGGTAGGAC
ATCTTCATGACCATTCCTCTTATGTACTTAAATATTTGGCGTCCAAGATG
ACGATTCTTTCTTACACCTTTAGCTGAAAATTTTGTCACGAATATGTTTA
GCTCAAATCCAATATAGCCTGCAGATCCCTGCTTCCtcttttatatactg
atggcgaaatgaataGCATGGTTTGGGATGTGAGTTTGAATATCCCAAAT
CATAATAACCACgtccaatcaaattttgttaatcTTTCATGATGAATCGG
GTcacgatttcttagaaaaaacgtTCTAATACTCAGACCATTTCCCATGC
CTTTTTAGCGTCCggttatcggacgctgcccttcaagaattgaaaaagcc
ttgttaatgaaaaaataggagaaaaagtgccctttttgaccCCTAGCGGA
CGCTGCTCtgcctttttagaattttgcctGATACTTGTCTTAATTAAGTG
AGGAGAACGCTACCAattcaattttccgactataaATCTTTGAGCCTCAC
AGCTCGAATCCGTCCTGCATATTATCGGAATATAAaaggacgggtctcct
gtctcaTAACTTAAATAAGGGTCGACAAACTTCCCTAATGGACATATTTT
TAATGACCTAAACTTTACTTTTAAACGCGTTTCTTAttcgaattaatttt
tttggcaCTGTCTAATAGCACTTTCATCCTTTCTATGATATGTGTTACAA
CAAGTGCGAGAGAAAATCTGTGTTGAAAATATGTGAAATATCATTGTTCA
GTGATTTTGCATAAATCCCACGAGATACACTTACTTGTatgctttgtttt
aatttcCTTGTTTTAAAACCCTAGTTCGATTACCGTTCTGCGCTATTTAA
TAGCACTTTCATTCGTTTTATGATTTTGTGTTACAAAATGTGCCAGAGAA
AAATCTGTGTTGAAAATATGTGAAATAGTCTTCAGTGATTTTGCATAAAT
CCCACAAGAAACATTTCGatgctttgttttaatttcCTTGTTTTAAAAAC
CTAGTTCGAGTATCTTTCTGCGCTATCTAATAGCACTATCATCCTTTCTA
TGATATTTGTTACAAAAAGTGCGAGAGAAAAATCTGTGTTGAAAATATGT
GAAATATTTCTTCAGTGATTTTGCATAAATCCCACGAGATACACTTCTTT
GCCTTGTTTCAATTTCCGCCTTTTGTAACCATAGCTCTGTAAATAGTTAC
TCTCGGGTGCCCAATAAACAGCCAAaaggatttttctttttagttctCTA
TTTCAGCGATACTTTTTAATTTCATCatatatttctttcttttaagtACA
TGTCATTGATGGCGGAACTGGGCGTGGACGCCCCACCACCTGCCAAAAAA
GCTGCACCACCAAGTCTACCGGTAAGGGACTTATCGGGACTTATTCTCGT
TTTCCCATCTccttcaaattcaacaaaattttcaaaattttaagattctT
GCATAATTTGTCAAGTCCACTTCTGTCTTACTCTTAACCACTATTTTAAG
ATTTGCTATTCATTGTAATTCTGCTAAAAAAAATCCCGAAAGCTTATCTC
ACCGATTGGCACATTTACGAGATAGTCTTCTCCTAAAGTATCAGTTTTCA
AATTGGAATACCTttagataaaaagaaaaatattttgttatgatattttt
gGCTGGGCTTCAATAAAGCATCCGTTTTCAATTTGGAGCGTGTAAAATTT
GAATGCCTTTAAATGAAATTGTAACGCTTTTGTCGTGGtggttttaaaga
ttttctcaaCCTGAAGTCAGACTTTTAATTTTACATTCTAGGAACCACCA
AAGGAATCGCCGTCGGATCGCAAACCTCCAGAACCTTCACATTCAATGGG
ATATGGTGGACGAAAATTCGATCGAGAACCAAGAAGTAGCAAATGGGGAC
CTCCCAACGACAACAGTGGTCGAGGTGGTGGCGCCCCGAAGTCCCTCATG
GATATGAATTTCAATAGTAATTACCGTGGTGAACGACCTAGAGGGCAAGC
GCCAAATCAAGTAGGGTGGAATAACGGACCGAGAGGACCAAGACATGGTG
GACCCCCGCGTGGAAATGCACCATGGCAACAAAACGGGCCTCCACCAAGA
GGTAATCCTTTGTTTCAAATCCCACGTGTTTTGGTTAATTAAGACAAACA
TAATTTAGATTTCCGATGAAATAGTTTATCCCCTCATTTGGTAACCCGGG
GTCCACTTTAGGCGCGATTAAGTGGAAGTCACTGGACTAAGCATCACAAA
TCATCAAAAACTAaattcagccagaagtagactctagctACTCATTTGGC
TTTTGCAAAATTTACTGTGGGTTATTGATTATTTTAGAACTAGTTTTTGG
GGGGGGGCTGGTAAAGGCTTAGAACCAATGAAGTATTAGCCCAAAGGGCT
TGaagcgaatctccttggtaACATTANGGGGGAGGCTGGTAAAGGCTTAG
AACCAATGAAGTAATAGCCCAAAGGGCTTGaagcgaatctccttggtaac
attagaagccaacaaatcctaccaaagttgtgcggcccgcctggttttta
catgccggattgaaactaaagaTTACCGCTAAGTTTCGAAAAATTATGAT
ATAGTAGTTACATTTCTACTAAAGCTCGCTTTCATCCAATCGGAATGCCA
TTCCAGTAGGCTGGAATTTTTAATAACATTTATGCCTTCTTTTCATTCAG
GACCCTCTAACTATAGTATGGGTCCACCACAGAACCAAGGACCTCCTCCA
ATGGGTGGCCCACCAATGCAGCAGCGACCTTGGGGTCAACAGCCACCACC
TACAGCATACCCTGGTCAATGGCAAGGTGCTTATGGAGGATACAACCCTT
ATCAACAGCAACAACCGCAGCAACAACAGCCTCCACCACCGTCCACTGCC
TACCCAACTCCTCCATGGGTAAGCCATTTTACATACCTTGagtgaactaa
ttttcgcggtgcGAGTGTATTAAATTAGGTTAATAACTTTCTTTCATATT
CTTAGGGGTTTTCGAggattttaagtaaaaattgaatttcgcggaACTAA
CTTTCGGGGTTGAcacccaaaaacgcgaaaattagtccCCTTAAATTAAC
ACCTCTTTGAAAAGCTGTCTTAGCACGAAATGGCAGCCactcaaattcaa
tttcaacccccaaatatttttttaattctaaacacatgttttttttataa
gcatacaaaaatctgaaaacaggctcagagatgcttaggtcgaaagctta
ataaggctgaaaaaatgcttgaggggatgcttaaatctaaagcataaatt
tagggaaatactgaaaatccgtgaaattccagccaaaaaaagccagaATC
AGGAAAAGTATATTTTTTGTAGGCTCAAGCAATGCTTGCcatatagtaga
gggcattttgtaaaatcgctcgactgttttgttagaagcacttgttatac
atttttggaaagctaaagggtaggggaatcgaaattactatNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
CGATTCCCCTACcctttagctttccaaaaatgtataacaagtgcttctaa
caaaacagtcaagcgattccaaaaaatcgaacaaaattccccctactaat
atgcttaatttttccccatatctgagcctagatatgcttataagtgcaat
gcttataaaaaaacatgtatgcgTATACACCCACCTAAGAAAAAAGGCCG
ATCTCGACTTTTCGGGCGGGCTAATAAGCAAGGCAGCGCTTCAGGACAAA
AAAGATCGAGCGATCTCATATGGTGTTCTCATGATATTCAAAGCTATTAT
GTGGCTATCGTAGGTACTTTGAACAAGGAATTAATTAGAGTTAGTAATTG
AAGTTAGAGAACATGCTTATCTTTAAAGTATTAAAATTTACAAggcatca
aaatattttttagtgaTAGCATATACCATAAAGGCGTGCAGTTTAAATTT
GACCTAACGCCTTTTCGGTACTACCTCTTATCCTGAAGAGTTAATGACAT
TGAACCTTATctattttgagcctcatttttTACACTGTTCAAAGACACTT
GAGACCTGCGGTAACCATATACTATAATGAAAACATGAACATTTCCTGTG
TTTACATGCTCAGCAATACAAGTgatgcttttttcttttgaacaaGTCTG
AGTGCCTCTGATAACAAACAAATTCGTGCAAGTTCAAAGTTCGGTTCTTT
GTTTCAGACTTCTTTCTCTCTGtgtatttttacttttctaacAACATAAC
AAATGTATTGAGTGTATACCATATAAAAATGAACTGACACAACACAGACA
GTCCCACGCTTTACCTCTCGTTTGATAATTCCTCAATTTGCAGATCTGAA
TGCGGGCGCTTTCCAAAAGCAAAGCCATCTTTTTTCGCATACTTTAAAAC
AATTTGGAAACCAAAGAAAAAACTacatcttttttttataagcaagtgta
tgccccttggtggtcaggctcgtgtatgcttaagttctcaaagcatacAG
GCATagattatgcttattatatgcttatgaatcatgcttataattcaccc
cgagccaagttttagtgaaattttagaaattttgtagtaatttgttcaga
tttgggagcagtggtagccgtggaatgtcttttttttacttgacctcaac
caaaccattttaaactgataaaaaattacaaacttgaaaaatatttcagg
ctcaCACGTATACTTATgttaagcgttatgcttataaaaaaaaacatgta
cttttTGTGAAAACTGACgtcagaaaataaaagaagCTTGGTTGGGATCT
TACTGAACTAACATGTTTCTTGAATCTATGCTTGAATCGTGATATAGAGT
TGGTTGAAAGGACAGTCACTCAAAGCCGTTCCCCGTCTATAAAATCATGC
ATTTGAGACGGAATTCttaattcttttcttttctcgtTTATAGTCTCAAC
AACCACCCccaccaccacctccaccaccatcATCAAGCTAAACGAACTCA
GTAAGAGATACCATATCTCGCTGTCGAACATTAACCCTCAAATGAGTAAT
GAACTCGAAACTGGTGGTCTTTTGGACGCCTCAAATGGACATCGTCCAAT
GGTGGCGTACAATAACACACTCAAACGTCATTCGAACTATATCGGATATA
ATGGCTTTACCAGGACTTATCGGTGTCAATACATCGTAGAAACGTTATCA
TTCTTATCTACAAGAACTTAAGATCGCTCGGATTGCCTCCTGCTTTTTGA
CACATAATTACGGACGAGAGCTGGTGTTATgtatatatgtttttttatgc
taatgaaattttaaaatttcgttGTTTTGACACACTTATTTTTAACCAGt
cgattttatgattttttcaacTAATACTTATTGTGACAAATACGATTTAA
GTTTTCAATCtgggaaataaaaaatataaatgaaaaaagttctgttttaa
aatttattggAAAGGTAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_014603XLOC_014603Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00025959-exon-sc0000556-1491911889:130530..131223TCONS_00025959-exon-sc0000556-1491911889:130530..131223Clytia hemisphaericaexon
TCONS_00025959-exon-sc0000556-1510915933:130530..131223TCONS_00025959-exon-sc0000556-1510915933:130530..131223Clytia hemisphaericaexon
TCONS_00025959-exon-sc0000556-1575043694:130530..131223TCONS_00025959-exon-sc0000556-1575043694:130530..131223Clytia hemisphaericaexon
TCONS_00025959-exon-sc0000556-1491911889:131861..131950TCONS_00025959-exon-sc0000556-1491911889:131861..131950Clytia hemisphaericaexon
TCONS_00025959-exon-sc0000556-1510915933:131861..131950TCONS_00025959-exon-sc0000556-1510915933:131861..131950Clytia hemisphaericaexon
TCONS_00025959-exon-sc0000556-1575043694:131861..131950TCONS_00025959-exon-sc0000556-1575043694:131861..131950Clytia hemisphaericaexon
TCONS_00025959-exon-sc0000556-1491911889:132724..132754TCONS_00025959-exon-sc0000556-1491911889:132724..132754Clytia hemisphaericaexon
TCONS_00025959-exon-sc0000556-1510915933:132724..132754TCONS_00025959-exon-sc0000556-1510915933:132724..132754Clytia hemisphaericaexon
TCONS_00025959-exon-sc0000556-1575043694:132724..132754TCONS_00025959-exon-sc0000556-1575043694:132724..132754Clytia hemisphaericaexon
TCONS_00025959-exon-sc0000556-1491911889:134079..134350TCONS_00025959-exon-sc0000556-1491911889:134079..134350Clytia hemisphaericaexon
TCONS_00025959-exon-sc0000556-1510915933:134079..134350TCONS_00025959-exon-sc0000556-1510915933:134079..134350Clytia hemisphaericaexon
TCONS_00025959-exon-sc0000556-1575043694:134079..134350TCONS_00025959-exon-sc0000556-1575043694:134079..134350Clytia hemisphaericaexon
TCONS_00025959-exon-sc0000556-1491911889:134839..134967TCONS_00025959-exon-sc0000556-1491911889:134839..134967Clytia hemisphaericaexon
TCONS_00025959-exon-sc0000556-1510915933:134839..134967TCONS_00025959-exon-sc0000556-1510915933:134839..134967Clytia hemisphaericaexon
TCONS_00025959-exon-sc0000556-1575043694:134839..134967TCONS_00025959-exon-sc0000556-1575043694:134839..134967Clytia hemisphaericaexon
TCONS_00025959-exon-sc0000556-1491911889:135415..135472TCONS_00025959-exon-sc0000556-1491911889:135415..135472Clytia hemisphaericaexon
TCONS_00025959-exon-sc0000556-1510915933:135415..135472TCONS_00025959-exon-sc0000556-1510915933:135415..135472Clytia hemisphaericaexon
TCONS_00025959-exon-sc0000556-1575043694:135415..135472TCONS_00025959-exon-sc0000556-1575043694:135415..135472Clytia hemisphaericaexon
TCONS_00025959-exon-sc0000556-1491911889:136776..136850TCONS_00025959-exon-sc0000556-1491911889:136776..136850Clytia hemisphaericaexon
TCONS_00025959-exon-sc0000556-1510915933:136776..136850TCONS_00025959-exon-sc0000556-1510915933:136776..136850Clytia hemisphaericaexon
TCONS_00025959-exon-sc0000556-1575043694:136776..136850TCONS_00025959-exon-sc0000556-1575043694:136776..136850Clytia hemisphaericaexon
TCONS_00025959-exon-sc0000556-1491911889:137271..137580TCONS_00025959-exon-sc0000556-1491911889:137271..137580Clytia hemisphaericaexon
TCONS_00025959-exon-sc0000556-1510915933:137271..137580TCONS_00025959-exon-sc0000556-1510915933:137271..137580Clytia hemisphaericaexon
TCONS_00025959-exon-sc0000556-1575043694:137271..137580TCONS_00025959-exon-sc0000556-1575043694:137271..137580Clytia hemisphaericaexon
TCONS_00025959-exon-sc0000556-1491911889:138180..138397TCONS_00025959-exon-sc0000556-1491911889:138180..138397Clytia hemisphaericaexon
TCONS_00025959-exon-sc0000556-1510915933:138180..138397TCONS_00025959-exon-sc0000556-1510915933:138180..138397Clytia hemisphaericaexon
TCONS_00025959-exon-sc0000556-1575043694:138180..138397TCONS_00025959-exon-sc0000556-1575043694:138180..138397Clytia hemisphaericaexon
TCONS_00025959-exon-sc0000556-1491911889:140823..141348TCONS_00025959-exon-sc0000556-1491911889:140823..141348Clytia hemisphaericaexon
TCONS_00025959-exon-sc0000556-1510915933:140823..141348TCONS_00025959-exon-sc0000556-1510915933:140823..141348Clytia hemisphaericaexon
TCONS_00025959-exon-sc0000556-1575043694:140823..141348TCONS_00025959-exon-sc0000556-1575043694:140823..141348Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000556supercontigsc0000556:130530..141348 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.98623	3.37096	3.02817	3.87441	1.4943	0.742709	3.23403	4.64897	2.33244	5.8681	6.8461	2.90527	12.3842	17.7583	12.8066	17.1571	10.2032	14.2466	13.6571	8.39503	5.12382	4.57932	4.37272	6.05484	9.86528	10.5686	9.93201	9.90047	7.78162	7.6508
Blast
[Close]
BLAST of TCONS_00025959 vs. Swiss-Prot (Human)
Match: SF01 (Splicing factor 1 OS=Homo sapiens GN=SF1 PE=1 SV=4)

HSP 1 Score: 282.337 bits (721), Expect = 1.776e-83
Identity = 158/272 (58.09%), Postives = 196/272 (72.06%), Query Frame = 3 
Query:  492 RSVALGS*GKLPHCFYRSPSPEPIYNSEGKRLNTXXXXXXXXXXXXXHILIKQAVEEIPNYKPPADYKPPAQKVSDKVFIPQERNPAVNFIGLLIGPRGNTLKRLESETGCKIIIRGKGSVKEGKVGRVPGQLMPGEDEPLHALITAPTAAEVKKGVKVVTDIVKEGVDCPDAANELRRNQLRELAELNGTL--IDEEIIKCKNCGATDHRHWECQEQKNITSQITCNKCGGYGHVAADCQVKGNSSSGPMQTFSEKAKMDNEYMSLMAELG 1301
            R +  G  G  P+   RSPSPEPIYNSEGKRLNTRE+R RKKLEEERH LI + V   P++KPPADYKPPA +VSDKV IPQ+  P +NF+GLLIGPRGNTLK +E E   KI+IRGKGSVKEGKVGR  GQ++PGEDEPLHAL+TA T   VKK V+ + +I+K+G++ P+  N+LR+ QLRELA LNGTL   D  I+          R W+  E ++IT+   C KCGG GH+A+DC+ +     G  Q+  +KA+MD EY+SLMAELG
Sbjct:   63 RKLRTGDLGIPPNPEDRSPSPEPIYNSEGKRLNTREFRTRKKLEEERHNLITEMVALNPDFKPPADYKPPATRVSDKVMIPQDEYPEINFVGLLIGPRGNTLKNIEKECNAKIMIRGKGSVKEGKVGRKDGQMLPGEDEPLHALVTANTMENVKKAVEQIRNILKQGIETPEDQNDLRKMQLRELARLNGTLREDDNRIL----------RPWQSSETRSITNTTVCTKCGGAGHIASDCKFQ---RPGDPQSAQDKARMDKEYLSLMAELG 321
The following BLAST results are available for this feature:
BLAST of TCONS_00025959 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SF011.776e-8358.09Splicing factor 1 OS=Homo sapiens GN=SF1 PE=1 SV=4[more]
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