TCONS_00025943 (transcript) - C. hemisphaerica

Overview
NameTCONS_00025943
Unique NameTCONS_00025943
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1152

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00025943 ID=TCONS_00025943|Name=TCONS_00025943|organism=Clytia hemisphaerica|type=transcript|length=1152bp
CTTGCACTGCTGTGATTCAAGACCATCTTCAAGATTTTGTTTATGTTCTT
TCCTAGAATTTTGTTGTGAAAAATTGTCCACCATGTTTGCCTTTGAAGCT
CAGAGCTTCATTAATTCGAAAGTATTTCTTTGTGCAGATCCATCGATGAG
AAGATGTGTCCAAATAATATAAATAACAATGTTTGAGACTCTGAAAAACG
TTATGAAAGTTCTGTTGCACGCTCGCGATACGACGCCATCTTGGTTTTGG
AAGAAATGGAACTTCTCGGAAAAGTCAATTTCAAAGAGGGGAGCTTTGTA
AACAACTTTGTAAAGTGATATCTAATGTATAATCTCTCAATTGAAGCAAA
TGATTTTCTCTTAGATCAAAATGAGCGCAAATTTTGCATATAATAAAGAT
TTTGGGAAAATAGTCAGGAGCAGTTGTAATTATGCTTCATGAAATTAAGT
AtatttaccccctgaaattTGAGTATGTTACATTCTCCGTGCTGTGTGGC
TTCCCCTCCCAAAGACCACGGAGACCAACAAACCTCAAGGTTCCGAACAT
CGCACGTAGTAAACATCAAAAAAAGAAGCTGACTCTGCACGATCTTGCAT
TTTGGACTCTTCTGCTCTTGGTGCTTTTGAAGGAAGGAacactttttatt
taaagtttttcCAAACCTAAACCGATAGCCActgataagaaaaattttaa
gaagCTGATACACTAAACATCACAAGAGAAAATGGCCAAAACATACAAAC
TTGAAGAAGTTGCAAAACATAATGATGGGCGGTCAACTTGGATGGTCATT
CACAACAAAGTTTACGATGTAACTAAATTCCTTGAAGAGcATCCAGGAGG
AGAAGAAGTTTTGTTAGAGTTAGCAGGTCAGGATGGCACTGAACAATTTG
AAGATGTGGGTCATTCTACCGATGCTAGAAGTTTGTTAGATGATCATTAC
ATTGGTGATTTGCATGAGgaTGATGTTGTAAAAGAAGCTACACCTAAAAA
GACTCAGgTCACAACATCAGACAGCGAGGGAAGTGGATGTACCTTATCGT
GAAAACACATGCTTCTGTATTCACCCCTTGTTTTATTGTATTCGCCAAAC
GTTCAGAAATTTATTGACATATGCACTAAAAACAGTCAACCAAGTTAAAA
AA
Run BLAST on NCBI

transcript from alignment at sc0000555:164037..167138-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00025943 ID=TCONS_00025943|Name=TCONS_00025943|organism=Clytia hemisphaerica|type=transcript|length=3102bp|location=Sequence derived from alignment at sc0000555:164037..167138- (Clytia hemisphaerica)
CTTGCACTGCTGTGATTCAAGACCATCTTCAAGATTTTGTTTATGTTCTT
TCCTAGAATTTTGTTGTGAAAAATTGTCCACCATGTTTGCCTTTGAAGCT
CAGAGCTTCATTAATTCGAAAGTATTTCTTTGTGCAGATCCATCGATGAG
AAGATGTGTCCAAATAATATAAATAACAATGTTTGAGACTCTGAAAAACG
TTATGAAAGTTCTGTTGCACGCTCGCGATACGACGCCATCTTGGTTTTGG
AAGAAATGGAACTTCTCGGAAAAGTCAATTTCAAAGAGGGGAGCTTTGTA
AACAACTTTGTAAAGTGATATCTAATGTATAATCTCTCAATTGAAGCAAA
TGATTTTCTCTTAGATCAAAATGAGCGCAAATTTTGCATATAATAAAGAT
TTTGGGAAAATAGTCAGGAGCAGTTGTAATTATGCTTCATGAAATTAAGT
ATATTTACCCCCTGAAATTTGAGTATGTTACATTCTCCGTGCTGTGTGGC
TTCCCCTCCCAAAGACCACGGAGACCAACAAACCTCAAGGTTCCGAACAT
CGCACGTAGTAAACATCAAAAAAAGAAGCTGACTCTGCACGATCTTGCAT
TTTGGACTCTTCTGCTCTTGGTGCTTTTGAAGGAAGGAACACTTTTTATT
TAAAGTTTTTCCAAACCTAAACCGATAGCCACTGATAAGAAAAATTTTAA
GAAGCTGATACACTAAACATCACAAGAGAAAATGGCCAAAACATACAAAC
TTGAAGAAGTTGCAAAACATAATGATGGGCGGTCAACTTGGATGGTCATT
CACAACAAAGTTTACGATGTAACTAAATTCCTTGAAGAGGTATATTTCCA
TCTTAATTTTACTCCTTATAATGGCTTAACAATAATTGAAACCTTCAACT
ATAGTGTAAAACTTGTGTTTAATGGGAGATTCGCCGTCATTCTGGGTAAA
GCAAATCCCATGACTATTCATATTGGGCCATTATTCCAGAATTTGTCTGT
AGCAGGGGGCGGACGACACAGCACAGGATTTCCGAGGGCAAAAGTTTTCA
CCAAAATTCGAAATTTCTAAGGGGAGAGAAGAAAATGTATGAATTTCCAA
GGCAATTGAATTAAAAAAGGCAAAAAGAGTGGAATTTCCAATGCATTTTG
CAAAAGTTCATCGATTTTCATCGGATTTTCCGACCACCACTGGAAAAGAA
AAATAATTTTTGAGGCGTAACTAAAATAAGTTTTTTTTTCTTCTAGCATC
CAGGAGGAGAAGAAGTTTTGTTAGAGTTAGCAGGTAGGTCAAAGATAAAG
CTCAGTATCACTCAAATAAAATTATTTATTTGATAACATTAAAAAACAAA
AAAAAGCTGAAAGAGCAGAAATTTTACCTTTGTGAAAATAAATACAAACA
AATTCTTCGAAATCAGATTCAGCGTAAAATTTATTGTAAGCTTGCCATTT
TTGGCAAAAAGTTTTTGAATATATTTTTTTAATGCTTTCATACTATATAG
GTCAGGATGGCACTGAACAATTTGAAGATGTGGGTCATTCTACCGATGCT
AGAAGTTTGTTAGATGATCATTACATTGGTGATTTGCATGAGGTGGGAAT
GTCTTGGATATTAAAAAAAAGGTCTATTCGTTTCAGAGCCACTTTTAAAA
CTAATTTTAGGTTTTTCACCAATAGGATTCAAGTTTATGGTATATATGAT
ATCCTTACAACTTTTTATTTTTATAGGATGATGTTGTAAAAGAAGCTACA
CCTAAAAAGACTCAGGTGAAAATCTTTATTCTGAAAATACTTTACAGTGA
AAAGCTCAAAACAACTTTAAGATTCTGCTGTAGAGATCTCTTCAGATTTA
ACTTTTTATGGGATAAAATTTCAGATTTTGCTGAATGGAAATTAAGAAAG
TCCCTATCCACAAAATATTATCAAACAAAACTTAAAAAAACGTCATAGTA
AGGCAAAAATAAAAAAATGTAGTGTTTCCGGAAACCGGCCAGGTGAAAAA
TATAAATTTTCTGACCCGGCCGCAGACTATGGGTTCATCATAAAGAAAAT
CGAGTTGACCGTTCAAGCTATCAAACATTGTTTAGCTAGATATTCCCGCT
TGTAAATCAAGTTCCTTAGTAGTTGATACATTAGTATTCAGGGCTTACTT
CTTACTGTTTGTACATAAAAGTTATCTTTAAAGTTCTATTTCAATGATCT
TAAGTGATTAAAAATAGCAACAAAAAGTTTTTTTCCGGCTGGTCGCATGA
GAGCTTTTTTTCCTTCACCTGCATCCTGGGAACACTACATTTTTCTATTT
TCGCCTAACTATACACTTTTTAAATGTTTGGCATCAAAGAAACGCTAATA
ATGCGTATGTATTTCAACAACTAACATGCAAGGTTTGGCTGGGCAGTAAA
AGGCACAGGATTGTGAAAATATTGTCTCCCAACAGTGAAATTTGCAAAAT
TAAGTCTCCGTGAAAGATTATCCCATTAAAATACCATGGTAGTTAAATAA
ATAAAGCAGTATTCGTGAAATTTTTTGAGATTAAGAATCCGCTGATTTCT
TCATTTTTTTAGGTCACAACATCAGACAGCGAGGGAAGGTATCCAACATT
TAGTTTTAATTTCTAACCACAATTAAGAGCTTACAATTTTACACAATTCA
CAATAATGATAATTATTTTGATGCCCTGTATACAGTGTGTCCCAAAAAAG
CGGACAAATTTTTATGTAAATTAAAATCCTCATGGTTTATGTGTAATTTT
ATGACTTGTATACTTGATATTTCATCTTGGGACTTGATATTCATTGACAA
GAGAATTTTAATCTTATTTCAATTATTTTAAGCTAGATAATGAGTTTTTT
ACTTAATATAAAAATATTTCTACTTTTTTGGGGCACGCTGTATTCGAGAG
AAATTTGAATAAAATCTACTAATCAATGTAACAAATTGAAAGTTCGAACA
AGTTAAAAAGATATATTTCTCCTTTTTTAACAGTGGATGTACCTTATCGT
GAAAACACATGCTTCTGTATTCACCCCTTGTTTTATTGTATTCGCCAAAC
GTTCAGAAATTTATTGACATATGCACTAAAAACAGTCAACCAAGTTAAAA
AA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_014589XLOC_014589Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00025943-exon-sc0000555-1575043694:166300..167138TCONS_00025943-exon-sc0000555-1575043694:166300..167138Clytia hemisphaericaexon
TCONS_00025943-exon-sc0000555-1575043694:165856..165892TCONS_00025943-exon-sc0000555-1575043694:165856..165892Clytia hemisphaericaexon
TCONS_00025943-exon-sc0000555-1575043694:165547..165638TCONS_00025943-exon-sc0000555-1575043694:165547..165638Clytia hemisphaericaexon
TCONS_00025943-exon-sc0000555-1575043694:165374..165412TCONS_00025943-exon-sc0000555-1575043694:165374..165412Clytia hemisphaericaexon
TCONS_00025943-exon-sc0000555-1575043694:164551..164576TCONS_00025943-exon-sc0000555-1575043694:164551..164576Clytia hemisphaericaexon
TCONS_00025943-exon-sc0000555-1575043694:164037..164155TCONS_00025943-exon-sc0000555-1575043694:164037..164155Clytia hemisphaericaexon
TCONS_00025943-exon-sc0000555-1510915933:166300..167138TCONS_00025943-exon-sc0000555-1510915933:166300..167138Clytia hemisphaericaexon
TCONS_00025943-exon-sc0000555-1510915933:165856..165892TCONS_00025943-exon-sc0000555-1510915933:165856..165892Clytia hemisphaericaexon
TCONS_00025943-exon-sc0000555-1510915933:165547..165638TCONS_00025943-exon-sc0000555-1510915933:165547..165638Clytia hemisphaericaexon
TCONS_00025943-exon-sc0000555-1510915933:165374..165412TCONS_00025943-exon-sc0000555-1510915933:165374..165412Clytia hemisphaericaexon
TCONS_00025943-exon-sc0000555-1510915933:164551..164576TCONS_00025943-exon-sc0000555-1510915933:164551..164576Clytia hemisphaericaexon
TCONS_00025943-exon-sc0000555-1510915933:164037..164155TCONS_00025943-exon-sc0000555-1510915933:164037..164155Clytia hemisphaericaexon
TCONS_00025943-exon-sc0000555-1491911889:166300..167138TCONS_00025943-exon-sc0000555-1491911889:166300..167138Clytia hemisphaericaexon
TCONS_00025943-exon-sc0000555-1491911889:165856..165892TCONS_00025943-exon-sc0000555-1491911889:165856..165892Clytia hemisphaericaexon
TCONS_00025943-exon-sc0000555-1491911889:165547..165638TCONS_00025943-exon-sc0000555-1491911889:165547..165638Clytia hemisphaericaexon
TCONS_00025943-exon-sc0000555-1491911889:165374..165412TCONS_00025943-exon-sc0000555-1491911889:165374..165412Clytia hemisphaericaexon
TCONS_00025943-exon-sc0000555-1491911889:164551..164576TCONS_00025943-exon-sc0000555-1491911889:164551..164576Clytia hemisphaericaexon
TCONS_00025943-exon-sc0000555-1491911889:164037..164155TCONS_00025943-exon-sc0000555-1491911889:164037..164155Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000555supercontigsc0000555:164037..167138 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
38.4101	37.1548	96.3542	101.939	33.6574	26.9979	37.8059	38.3249	35.2631	32.3741	32.9245	29.0388	30.2028	34.8395	26.9561	26.9839	32.603	33.631	17.4987	17.5332	24.6257	23.536	30.0634	25.4632	35.074	33.3922	26.8618	22.8372	24.5728	25.9589
Blast
[Close]
BLAST of TCONS_00025943 vs. Swiss-Prot (Human)
Match: CYB5 (Cytochrome b5 OS=Homo sapiens GN=CYB5A PE=1 SV=2)

HSP 1 Score: 127.487 bits (319), Expect = 6.726e-35
Identity = 62/103 (60.19%), Postives = 73/103 (70.87%), Query Frame = 3 
Query:  735 AKTYKLEEVAKHNDGRSTWMVIHNKVYDVTKFLEEHPGGEEVLLELAGQDGTEQFEDVGHSTDARSLLDDHYIGDLHEDDVVKEATPKKTQVTTSDSEGSGCT 1043
             K Y LEE+ KHN  +STW+++H+KVYD+TKFLEEHPGGEEVL E AG D TE FEDVGHSTDAR +     IG+LH DD  K   P +T +TT DS  S  T
Sbjct:    9 VKYYTLEEIQKHNHSKSTWLILHHKVYDLTKFLEEHPGGEEVLREQAGGDATENFEDVGHSTDAREMSKTFIIGELHPDDRPKLNKPPETLITTIDSSSSWWT 111
The following BLAST results are available for this feature:
BLAST of TCONS_00025943 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CYB56.726e-3560.19Cytochrome b5 OS=Homo sapiens GN=CYB5A PE=1 SV=2[more]
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