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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00025933 ID=TCONS_00025933|Name=TCONS_00025933|organism=Clytia hemisphaerica|type=transcript|length=1656bp
GACAAAGTTCAaggtcattaaaaatgatactgTGTCGTACCAAATTACCG
ATTTATTTGTGTGCAATTCAAGTTATATTTATTTGGTTAGTGGAAGCTTA
TATTTTCGATATGGTCGCTAAAAATGAAGTACCTACTCGTGACCCTGTGG
ATGAGATTTCAATCGAATTGAAACAAGTCTGTTTTTCGAAATGTCATTAC
ATGTCGAAATCTTGTCAATCGATGGTCATTGAGTCTGTTGGCGAACGTAA
TTTCATTTGCAAGTTTTATGATTTTACTTTTGATTTCCATCCTGAACTTC
AGGGGTATACTGGTATCTCATCGTCAACGCTTTATTATTCGaagaaatac
tttaaaaaagatTGCCACGCTTGGTTTCTATCCGGCGCTAGAGAAGATGG
CCCTTATGACATCCTCGTCGCAGGAAAATATCCTGAAACGGTAATATGCA
AGATGGTCGATGATGGATCTAAGATGGAAGGAGGCTGGATAATGGCTTTG
AACAAAACCAGGACTCATACACATGGCGAATCAAATGATTTTGAGCTTTA
TTGGGAAGACTATAAAAATGGTTTCGAGGTCAACTCTGGGCACTACTTGG
GCAATGAATATCTTCATTTGTTGACGAAATATGAACATCAACAATTGTGG
GCCATCTATGATCACGAAAGGAGAGAAGAATTCTACCCCAAAGTCATAGT
GAAAGCGGAAGCTGATAATTACACAATTCTTTTGGATGGTGCCACGTCTA
GTCATGACAGCTTTGGTGGAATGGTACACGGAAACCCTTTTAGTGCGAGA
CTCGGCCCAAATGAACGTAATCCTACTTGCGAACATAGAAAATTAGGCTA
CTGGTATTCGCCTATACAACCACCAACTACTAATATACAACCATGCAGAG
ACTATTATAGACTATTTGACCCAAGCACTAAAGGAAATAATCGTTTTAAA
GTGAAATATGCCTACATTTTGCTTCGCCCTAAACTTTGATGGATTCACCG
CTtcattaaatgtttttaaattttgcaaacAATCGATTCAAGAAGCGTCT
AGATTTTTGAAGCAGTGAAATGTGGCTAGCCGtgaaatgtctttttttac
ttgacaacttacaaacctttttaaacagaaaaaaaattgacgactTGAAA
AATGGCTGGCGTACAcgtatgttttttttataagcatatgttttTTGGGA
AACAAGCACAGTTATGCTTAGGGATATTTTAGACTCAAATTATGTTTatc
atatgcttaattttcctaaaaattcagtctccaattttttccaaaatctg
tcgTTGTTATACATGACGATAGGCAAATAAGTAAtgacacaaaaaaaatt
caggaaagttGTGAACGATGGCCGCGTTAACGCTTGTATGTTTTCTTTCC
ACGTGAGttttaatggcgttttttggacaaaaatgtctttcatccaccaa
attttcaagttaaccgccaaattaaattccctctgaaaaaactttttggg
ccatccaccaaattaaataacggccaaaatttctttctttaaggtATTTG
ACATCAAAGTGAATTCTTATATCGAAGTTCTTAGAGACGCACAAAATTTT
GAGCTGTTTTTTACCTGGTAGACTTCACGGAATCCCTTTTTGTGGTGTTA
CCATGC Run BLAST on NCBI protein sequence of TCONS_00025933-protein >TCONS_00025933-protein ID=TCONS_00025933-protein|Name=TCONS_00025933-protein|organism=Clytia hemisphaerica|type=polypeptide|length=328bp
QSSRSLKMILCRTKLPIYLCAIQVIFIWLVEAYIFDMVAKNEVPTRDPVD
EISIELKQVCFSKCHYMSKSCQSMVIESVGERNFICKFYDFTFDFHPELQ
GYTGISSSTLYYSKKYFKKDCHAWFLSGAREDGPYDILVAGKYPETVICK
MVDDGSKMEGGWIMALNKTRTHTHGESNDFELYWEDYKNGFEVNSGHYLG
NEYLHLLTKYEHQQLWAIYDHERREEFYPKVIVKAEADNYTILLDGATSS
HDSFGGMVHGNPFSARLGPNERNPTCEHRKLGYWYSPIQPPTTNIQPCRD
YYRLFDPSTKGNNRFKVKYAYILLRPKL Run BLAST on NCBI transcript from alignment at sc0000555:196811..199341+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00025933 ID=TCONS_00025933|Name=TCONS_00025933|organism=Clytia hemisphaerica|type=transcript|length=2531bp|location=Sequence derived from alignment at sc0000555:196811..199341+ (Clytia hemisphaerica)
GACAAAGTTCAaggtcattaaaaatgatactgTGTCGTACCAAATTACCG
ATTTATTTGTGTGCAATTCAAGTTATATTTATTTGGTTAGTGGAAGCTTA
TATTTTCGATATGGTCGCTAAAAATGAAGTACCTACTCGTGACCCTGTGG
ATGAGATTTCAATCGAATTGAAACAAGTCTGTTTTTCGAAATGTCATTAC
ATGTCGAAATCTTGTCAATCGATGGTCATTGAGTCTGTTGGCGAACGTAA
TTTCATTTGCAAGTTTTATGATTTTACTTTTGATTTCCATCCTGAACTTC
AGGGGTATACTGGTAAGTCATGCCTTTTTATTGGACTAAGGCTAAAACTA
agtctacgggaccttgaaaaccttgaaagtgAATGTAATGTAAAAGaatt
ccttgaaaaccttgaaaaagcaTGACAGTATAGTTGTCTTGTTTTGGCTT
CGGTCTCCACTGAAGTTTTGATCCATGCTAAAACTCCAAAAAATTTAtta
ctcgcttcgctcgcgATCATTTTCATGGACCAAATGCTGGTAATAATTGC
ACGCACCTCGTCAAGTACGGTGATATCGTactttttaaatcaatttgagt
tctgaaaaaccttgaaaaatcgctaaaatattgCCAAAATAACCTTGAAA
GCCTTGAAAATGgtgagaaaaaaatccgtagacaccctggTTGGGGTTTA
TGCGCGATCCTTTAATTTTACAGTCATACCATCTAAAATTCAAGTTAACG
AGTATGATGTTTGCTTCCCGTAGGGGAGTTTACTTACTCGGTTTTCACCA
ATGTCCAGTTGTCTGCACGGAAAAAATTAGCCTAATTCATTTGTTTTTAG
ATTGCATCCTATAGATTTTGTTGACTTAGACATTATTAATtacattaaag
gttttattaaCATAAGTGTtaccgtttcatatcagacacatgctATCGGG
ACattgtctgcctattgttatattatgctgatgtaaacaaaacaatgttt
ttctttcctctTTTCTGACCAGTCTTGCTCCGCATCCGTACTAATCAAAT
GTAAAAAagcgatatcactcttattttaaaaacaaaacctttaattttca
atcctttttgGTCTTTGTTCTTTCATAGGTATCTCATCGTCAACGCTTTA
TTATTCGaagaaatactttaaaaaagatTGCCACGCTTGGTTTCTATCCG
GCGCTAGAGAAGATGGCCCTTATGACATCCTCGTCGCAGGAAAATATCCT
GAAACGGTAATATGCAAGATGGTCGATGATGGATCTAAGATGGAAGGAGG
CTGGATAATGGCTTTGAACAAAACCAGGACTCATACACATGGCGAATCAA
ATGATTTTGAGCTTTATTGGGAAGACTATAAAAATGGTTTCGAGGTCAAC
TCTGGGCACTACTTGGGCAATGAATATCTTCATTTGTTGACGAAATATGA
ACATCAACAATTGTGGGCCATCTATGATCACGAAAGGAGAGAAGAATTCT
ACCCCAAAGTCATAGTGAAAGCGGAAGCTGATAATTACACAATTCTTTTG
GATGGTGCCACGTCTAGGCATGAAAGCTTTGGTGGAATGGTACACGGAAA
CCCTTTTAGTGCNATGTCACGTCTAGTCATGACAGCTTTGGTGGAATGGT
ACACGGAAACCCTTTTAGTGCGAGACTCGGCCCAAATGAACGTAATCCTA
CTTGCGAACATAGAAAATTAGGCTACTGGTATTCGCCTATACAACCACCA
ACTACTAATATACAACCATGCAGAGACTATTATAGACTATTTGACCCAAG
CACTAAAGGAAATAATCGTTTTAAAGTGAAATATGCCTACATTTTGCTTC
GCCCTAAACTTTGATGGATTCACCGCTtcattaaatgtttttaaattttg
caaacAATCGATTCAAGAAGCGTCTAGATTTTTGAAGCAGTGAAATGTGG
CTAGCCGtgaaatgtctttttttacttgacaacttacaaacctttttaaa
cagaaaaaaaattgacgactTGAAAAATGGCTGGCGTACAcgtatgtttt
ttttataagcatatgttttTTGGGAAACAAGCACAGTTATGCTTAGGGAT
ATTTTAGACTCAAATTATGTTTatcatatgcttaattttcctaaaaattc
agtctccaattttttccaaaatctgtcgTTGTTATACATGACGATAGGCA
AATAAGTAAtgacacaaaaaaaattcaggaaagttGTGAACGATGGCCGC
GTTAACGCTTGTATGTTTTCTTTCCACGTGAGttttaatggcgttttttg
gacaaaaatgtctttcatccaccaaattttcaagttaaccgccaaattaa
attccctctgaaaaaactttttgggccatccaccaaattaaataacggcc
aaaatttctttctttaaggtATTTGACATCAAAGTGAATTCTTATATCGA
AGTTCTTAGAGACGCACAAAATTTTGAGCTGTTTTTTACCTGGTAGACTT
CACGGAATCCCTTTTTGTGGTGTTACCATGC Coding sequence (CDS) from alignment at sc0000555:196811..199341+ >TCONS_00025933 ID=TCONS_00025933|Name=TCONS_00025933|organism=Clytia hemisphaerica|type=CDS|length=2961bp|location=Sequence derived from alignment at sc0000555:196811..199341+ (Clytia hemisphaerica)
CAAAGTTCAaggtcattaaaaatgatactgTGTCGTACCAAATTACCGAT
TTATTTGTGTGCAATTCAAGTTATATTTATTTGGTTAGTGGAAGCTTATA
TTTTCGATATGGTCGCTAAAAATGAAGTACCTACTCGTGACCCTGTGGAT
GAGATTTCAATCGAATTGAAACAAGTCTGTTTTTCGAAATGTCATTACAT
GTCGAAATCTTGTCAATCGATGGTCATTGAGTCTGTTGGCGAACGTAATT
TCATTTGCAAGTTTTATGATTTTACTTTTGATTTCCATCCTGAACTTCAG
GGGTATACTGGTATCTCATCGTCAACGCTTTATTATTCGaagaaatactt
taaaaaagatTGCCACGCTTGGTTTCTATCCGGCGCTAGAGAAGATGGCC
CTTATGACATCCTCGTCGCAGGAAAATATCCTGAAACGGTAATATGCAAG
ATGGTCGATGATGGATCTAAGATGGAAGGAGGCTGGATAATGGCTTTGAA
CAAAACCAGGACTCATACACATGGCGAATCAAATGATTTTGAGCTTTATT
GGGAAGACTATAAAAATGGTTTCGAGGTCAACTCTGGGCACTACTTGGGC
AATGAATATCTTCATTTGTTGACGAAATATGAACATCAACAATTGTGGGC
CATCTATGATCACGAAAGGAGAGAAGAATTCTACCCCAAAGTCATAGTGA
AAGCGGAAGCTGATAATTACACAATTCTTTTGGATGGTGCCACGTCTAGT
CATGACAGCTTTGGTGGAATGGTACACGGAAACCCTTTTAGTGCGAGACT
CGGCCCAAATGAACGTAATCCTACTTGCGAACATAGAAAATTAGGCTACT
GGTATTCGCCTATACAACCACCAACTACTAATATACAACCATGCAGAGAC
TATTATAGACTATTTGACCCAAGCACTAAAGGAAATAATCGTTTTAAAGT
GAAATATGCCTACATTTTGCTTCGCCCTAAACTTTGACAAAGTTCAaggt
cattaaaaatgatactgTGTCGTACCAAATTACCGATTTATTTGTGTGCA
ATTCAAGTTATATTTATTTGGTTAGTGGAAGCTTATATTTTCGATATGGT
CGCTAAAAATGAAGTACCTACTCGTGACCCTGTGGATGAGATTTCAATCG
AATTGAAACAAGTCTGTTTTTCGAAATGTCATTACATGTCGAAATCTTGT
CAATCGATGGTCATTGAGTCTGTTGGCGAACGTAATTTCATTTGCAAGTT
TTATGATTTTACTTTTGATTTCCATCCTGAACTTCAGGGGTATACTGGTA
TCTCATCGTCAACGCTTTATTATTCGaagaaatactttaaaaaagatTGC
CACGCTTGGTTTCTATCCGGCGCTAGAGAAGATGGCCCTTATGACATCCT
CGTCGCAGGAAAATATCCTGAAACGGTAATATGCAAGATGGTCGATGATG
GATCTAAGATGGAAGGAGGCTGGATAATGGCTTTGAACAAAACCAGGACT
CATACACATGGCGAATCAAATGATTTTGAGCTTTATTGGGAAGACTATAA
AAATGGTTTCGAGGTCAACTCTGGGCACTACTTGGGCAATGAATATCTTC
ATTTGTTGACGAAATATGAACATCAACAATTGTGGGCCATCTATGATCAC
GAAAGGAGAGAAGAATTCTACCCCAAAGTCATAGTGAAAGCGGAAGCTGA
TAATTACACAATTCTTTTGGATGGTGCCACGTCTAGTCATGACAGCTTTG
GTGGAATGGTACACGGAAACCCTTTTAGTGCGAGACTCGGCCCAAATGAA
CGTAATCCTACTTGCGAACATAGAAAATTAGGCTACTGGTATTCGCCTAT
ACAACCACCAACTACTAATATACAACCATGCAGAGACTATTATAGACTAT
TTGACCCAAGCACTAAAGGAAATAATCGTTTTAAAGTGAAATATGCCTAC
ATTTTGCTTCGCCCTAAACTTTGACAAAGTTCAaggtcattaaaaatgat
actgTGTCGTACCAAATTACCGATTTATTTGTGTGCAATTCAAGTTATAT
TTATTTGGTTAGTGGAAGCTTATATTTTCGATATGGTCGCTAAAAATGAA
GTACCTACTCGTGACCCTGTGGATGAGATTTCAATCGAATTGAAACAAGT
CTGTTTTTCGAAATGTCATTACATGTCGAAATCTTGTCAATCGATGGTCA
TTGAGTCTGTTGGCGAACGTAATTTCATTTGCAAGTTTTATGATTTTACT
TTTGATTTCCATCCTGAACTTCAGGGGTATACTGGTATCTCATCGTCAAC
GCTTTATTATTCGaagaaatactttaaaaaagatTGCCACGCTTGGTTTC
TATCCGGCGCTAGAGAAGATGGCCCTTATGACATCCTCGTCGCAGGAAAA
TATCCTGAAACGGTAATATGCAAGATGGTCGATGATGGATCTAAGATGGA
AGGAGGCTGGATAATGGCTTTGAACAAAACCAGGACTCATACACATGGCG
AATCAAATGATTTTGAGCTTTATTGGGAAGACTATAAAAATGGTTTCGAG
GTCAACTCTGGGCACTACTTGGGCAATGAATATCTTCATTTGTTGACGAA
ATATGAACATCAACAATTGTGGGCCATCTATGATCACGAAAGGAGAGAAG
AATTCTACCCCAAAGTCATAGTGAAAGCGGAAGCTGATAATTACACAATT
CTTTTGGATGGTGCCACGTCTAGTCATGACAGCTTTGGTGGAATGGTACA
CGGAAACCCTTTTAGTGCGAGACTCGGCCCAAATGAACGTAATCCTACTT
GCGAACATAGAAAATTAGGCTACTGGTATTCGCCTATACAACCACCAACT
ACTAATATACAACCATGCAGAGACTATTATAGACTATTTGACCCAAGCAC
TAAAGGAAATAATCGTTTTAAAGTGAAATATGCCTACATTTTGCTTCGCC
CTAAACTTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00025933-exon-sc0000555-1491911889:196811..197122 | TCONS_00025933-exon-sc0000555-1491911889:196811..197122 | Clytia hemisphaerica | exon |
| TCONS_00025933-exon-sc0000555-1510915933:196811..197122 | TCONS_00025933-exon-sc0000555-1510915933:196811..197122 | Clytia hemisphaerica | exon |
| TCONS_00025933-exon-sc0000555-1575043694:196811..197122 | TCONS_00025933-exon-sc0000555-1575043694:196811..197122 | Clytia hemisphaerica | exon |
| TCONS_00025933-exon-sc0000555-1491911889:197939..198377 | TCONS_00025933-exon-sc0000555-1491911889:197939..198377 | Clytia hemisphaerica | exon |
| TCONS_00025933-exon-sc0000555-1510915933:197939..198377 | TCONS_00025933-exon-sc0000555-1510915933:197939..198377 | Clytia hemisphaerica | exon |
| TCONS_00025933-exon-sc0000555-1575043694:197939..198377 | TCONS_00025933-exon-sc0000555-1575043694:197939..198377 | Clytia hemisphaerica | exon |
| TCONS_00025933-exon-sc0000555-1491911889:198437..199341 | TCONS_00025933-exon-sc0000555-1491911889:198437..199341 | Clytia hemisphaerica | exon |
| TCONS_00025933-exon-sc0000555-1510915933:198437..199341 | TCONS_00025933-exon-sc0000555-1510915933:198437..199341 | Clytia hemisphaerica | exon |
| TCONS_00025933-exon-sc0000555-1575043694:198437..199341 | TCONS_00025933-exon-sc0000555-1575043694:198437..199341 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000555 | supercontig | sc0000555:196811..199341 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR002181 | Fibrinogen_a/b/g_C_dom |
| IPR014716 | Fibrinogen_a/b/g_C_1 |
Blast
The following BLAST results are available for this feature:
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