TCONS_00025930 (transcript) - C. hemisphaerica

Overview
NameTCONS_00025930
Unique NameTCONS_00025930
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1183

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00025930 ID=TCONS_00025930|Name=TCONS_00025930|organism=Clytia hemisphaerica|type=transcript|length=1183bp
GAATATATCGCTGCCATTCAAACACCCAATTTGTCAAAGATTTTTAAAAG
CTCGAGACGCAACATTCAAAATATCGAATTGAATGACACAGAAGAAAATG
GTTCGACTCTTCTTAATACAAAAGAAACTGATTACAAATCTGGACAAAAT
GATGTACAGAAAGACGCGAAATCTGGACACCCTTTAGACCGACTTAGTCG
TTATGTTTTTCCTTCTATGTATGTAGTATTTTTAATATGCTATTTCATTT
CTTATAGTAATTTGTAAAATAGTTTATTTCGAGAAGATAAATATTTAACC
AAAAATGTCCGATATGTAGAACTGTACCCTGTTATCTTACTTTTATGATG
CCGCTGgaaatatatttataaaaaattacaCTTTGATTTCCATATAACAT
AGCTTTACTGAAACGTTTATTTTGAATTGTTCaggataaaattttaaaat
atcaaatttaattcCATCATTAAATAATTTGacattatattttaaaaatg
aattgattCTAATTTTTACTATATCCAGCTACAATTGCCtagcattttaa
attataacaataacaaaaataataaaaaattaccgtctaaataaaaataa
tgaaagttTATTATTAAGGCCTAACACTAAAATAAAATATGGATGGTTCA
AAGAAATGAGGACTTATGCAAAGATTAAGTCGAAGATAGATTTTTGTGCT
AGAAGAAGGAAAGATTTCCTAAGTTTATATTACAATAATtagtaaaagag
aaaattttatgTGCTTATAacttcaaaattagaaaatgtcATTTTACCAT
TCGTCTCGTGCTTTTTAAAGGCACCTGGAATTATTGTCACCATATCAATT
CCATAATTTACACACCATTCTAATACTTTTCTACGTATCTAACCGATCCA
AAAACGTCTGTTATGAAAGATCAGCTTTTTGTAGATTGCATGTAGAGGAA
ACATCCAATAGCAACCCCTACTACCATTACGGAAACCATTAGCAACCAAT
TCGATGAAGTACTGAAAATGAAACGGATGATTTTTGGATTCACTGGACAG
TTTTTTTAACTTGGTTGACTGTTTTTAGTGCATATGTCAATAAATTTCTG
AACGTTTGGCGAATACAATAAAACAAGGGGTGAATACAGAAGCATGTGTT
TTCACGATAAGGTACATCCACTGTTAAAAAAGG
Run BLAST on NCBI

transcript from alignment at sc0000555:160411..164168+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00025930 ID=TCONS_00025930|Name=TCONS_00025930|organism=Clytia hemisphaerica|type=transcript|length=3758bp|location=Sequence derived from alignment at sc0000555:160411..164168+ (Clytia hemisphaerica)
GAATATATCGCTGCCATTCAAACACCCAATTTGTCAAAGGtattatattt
caatttgtAAGTTTTTGTCGAAAGAAAATTGGTACGATTTCGGCAAACAA
GCAAAATAAACGGAattttcttcctcttttttAAGTACTGGTTTCAGTCT
ATAATTATCGGATTTGGTTTGtttgtaaaatttggcgggcattaaaattt
gaaaatatgataaaaaggtgctatttttcacaaaatgttCTTTTTGTTAN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNATTTAACTAAATTTCAGAATGTGTATCTCACAAaa
acttttccaatttttcgtctgcttttagtcatttttgttcaaatgggaat
ttggtattttcgttctgacagggttccaaatttaccaaacattgaAATCT
GACAAGGTCGACTTTTTGCAcatccccgtcggccgtcaaggtccaGGGAT
TGAATTAACGTATCGCATTTCGTGATTTGCGatgtgtttttgaaaatgta
cgacgcaaaaattcaaagttgaaacaagcattttattttaaatcttcAAG
CAAATACATAACTGATACTTTGCCCACAAATTATTCTTTAGAGTAAAAAA
TACATCgtatacattaaaggaagaaatattGGCGGGCGGTTGTAGGATAT
TTAGGGATCATTATTGACCCTAAATTTCCTAcaaccgccaaatttaattt
ttatgttgaaaACCCAATTCTAGAGCCTAATCTAGgtcaaaatttggcaa
aaaaatttcttcctttaaaatgTATTCATAAGAACGTATCCTGAAAGCTG
AAAAAATTTTGCGCCCTGTCGCGTTTTTCTTTAGCTCATTTCGATCCCTT
AGACCAGTGCTCATTTAAGGTACTTGtaggttttttttaagaacttccGA
AATGTGTTATTTCTGGGGCCTTCGGACAAGTTTTCTTAAAAACGAAAATG
AATTTATCCTTCAGATTTTTAAAAGCTCGAGACGCAACATTCAAAATATC
GAATTGAATGACACAGAAGAAAATGGTTCGACTCTTCTTAATACAAAAGA
AACTGATTACAAATCTGGACAAAATGATGTACAGAAAGACGCGAAATCTG
GACACCCTTTAGACCGACTTAGTCGTTATGTTTTTCCTTCTATGTATGTA
GTATTTTTAATATGCTATTTCATTTCTTATAGTAATTTGTAAAATAGTTT
ATTTCGAGAAGATAAATATTTAACCAAAAATGTCCGATATGTAGAACTGT
ACCCTGTTATCTTACTTTTATGATGCCGCTGgaaatatatttataaaaaa
ttacaCTTTGATTTCCATATAACATAGCTTTACTGAAACGTTTATTTTGA
ATTGTTCaggataaaattttaaaatatcaaatttaattcCATCATTAAAT
AATTTGacattatattttaaaaatgaattgattCTAATTTTTACTATATC
CAGCTACAATTGCCtagcattttaaattataacaataacaaaaataataa
aaaattaccgtctaaataaaaataatgaaagttTATTATTAAGGCCTAAC
ACTAAAATAAAATATGGATGGTTCAAAGAAATGAGGACTTATGCAAAGAT
TAAGTCGAAGATAGATTTTTGTGCTAGAAGAAGGAAAGATTTCCTAAGTT
TATATTACAATAATtagtaaaagagaaaattttatgTGCTTATAacttca
aaattagaaaatgtcATTTTACCATTCGTCTCGTGCTTTTTAAAGGCACC
TGGAATTATTGTCACCATATCAATTCCATAATTTACACACCATTCTAATA
CTTTTCTACGTATCTAACCGATCCAAAAACGTCTGTTATGAAAGATCAGC
TTTTTGTAGATTGCATGTAGAGGAAACATCCAATAGCAACCCCTACTACC
ATTACGGAAACCATTAGCAACCAATTCGATGAAGTACTGAAAATGAAACG
GATGATTTTTGGATTCACTGGACAGTTTTTTTAACTTGGTTGACTGTTTT
TAGTGCATATGTCAATAAATTTCTGAACGTTTGGCGAATACAATAAAACA
AGGGGTGAATACAGAAGCATGTGTTTTCACGATAAGGTACATCCACTGTT
AAAAAAGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_014581XLOC_014581Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00025930-exon-sc0000555-1491911889:160411..160449TCONS_00025930-exon-sc0000555-1491911889:160411..160449Clytia hemisphaericaexon
TCONS_00025930-exon-sc0000555-1510915933:160411..160449TCONS_00025930-exon-sc0000555-1510915933:160411..160449Clytia hemisphaericaexon
TCONS_00025930-exon-sc0000555-1575043694:160411..160449TCONS_00025930-exon-sc0000555-1575043694:160411..160449Clytia hemisphaericaexon
TCONS_00025930-exon-sc0000555-1491911889:163025..164168TCONS_00025930-exon-sc0000555-1491911889:163025..164168Clytia hemisphaericaexon
TCONS_00025930-exon-sc0000555-1510915933:163025..164168TCONS_00025930-exon-sc0000555-1510915933:163025..164168Clytia hemisphaericaexon
TCONS_00025930-exon-sc0000555-1575043694:163025..164168TCONS_00025930-exon-sc0000555-1575043694:163025..164168Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000555supercontigsc0000555:160411..164168 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
27.421	27.2156	57.5969	66.1293	20.914	14.1913	28.2164	25.0083	21.1188	19.2483	22.193	16.6285	18.0157	15.9381	15.1928	15.3626	17.1789	17.2453	12.3259	10.8318	24.7204	22.7045	23.7258	25.6263	12.4917	18.5155	27.6643	21.851	24.8109	18.7506
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00025930 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top