TCONS_00025925 (transcript) - C. hemisphaerica

Overview
NameTCONS_00025925
Unique NameTCONS_00025925
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1247

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00025925 ID=TCONS_00025925|Name=TCONS_00025925|organism=Clytia hemisphaerica|type=transcript|length=1247bp
ATTCTACATTCTCTTGATGCATTGAATGATACTCATGTTTTCTCTCATTT
TCAGAATAAgagacaaaaaataaatatagaaTAATAATCAAAATGAGTCG
TCGAAGAACAAATGGGAATGTTGAAACAGAGGATAAACCAAGTGTTTCAA
gtataataaaaaaatctttaacaacAGACTCCAACTGGGAGGATAAGGAT
TCATTTTTAGATGTCATTTACTGGGTACGACAAATTTTTGCTCTTTTCAA
CGGATTGGCATGGGGAGTTATCCCTTTAACAGGAATACTTGGATTAGCTT
TGTTTTTTGTTATCAATTGTGCAATAGTCTTCCTATATGTGAGTAGACAA
AGTAAAATTGACGAAGACGAGTTTGGTGGTATACAAGAGCTAGTCAAAGA
GGGACTTTTCACTGCTTTTGCTGTTTTTTTAATAAGTTGGATAATGACAT
TCACGTATTTGCATGGATAAATTTGCTTACTCCTCCAAATATGTAACTCT
TTTATGCTGAAAAGAATTATGGGTAAAGCAGCATCTGCAAGTGTGAAAAA
AAAAggcttaaaacatttttttttgagcAAAGGTAAAACgatgtttttac
tttttactatCTATTTTATTAACCTTTCTGAAGAGTTCTTTACCTAATTT
GGGAATGAGGTTGGTAtggtattttatattttaggaaatttttctcattt
ttactcTTTCGACAACTTCCACCTAAAATCCATTATCACGAGAATATTTT
TATTCCTTTTCCTGAATTCATTGGCTagttaaatttactttttttgctgg
aTACAATAACTATGAGATTTTCCGAAATATTTTTCNCTCATTAGCTagtt
aaatttactttttttgctggaTACAATAAGAGATTTTCCATAATATTCTT
CACTGCTAGATCGCCACTCTTTATTGAGCCTCGTCCGAAAGTTTTATATT
CATCATGtgaattttaaaatgtttcaaaacttttgcacactctaatcaaa
tttcaaaattgatatcAATGCAAGTATTTTTAGAGAAAATGCCATTTTCT
AAAGCCAAATAAGTACGTGTCCTCTTAGCCTGAAGCCTTTTTTTATGCTA
CCAGAGAAggaatttttacttttcatcttacagtcttttttaaactttta
ggtAGAATGAAGAAATTTCTAGAAACTTTTAAGTTTATAAACTTTATCTT
AAAAAATATAACAACAACTACATTTTTAGATAGACAatagtattttt
Run BLAST on NCBI

protein sequence of TCONS_00025925-protein

>TCONS_00025925-protein ID=TCONS_00025925-protein|Name=TCONS_00025925-protein|organism=Clytia hemisphaerica|type=polypeptide|length=125bp
MSRRRTNGNVETEDKPSVSSIIKKSLTTDSNWEDKDSFLDVIYWVRQIFA
LFNGLAWGVIPLTGILGLALFFVINCAIVFLYVSRQSKIDEDEFGGIQEL
VKEGLFTAFAVFLISWIMTFTYLHG
Run BLAST on NCBI

transcript from alignment at sc0000555:120826..124439+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00025925 ID=TCONS_00025925|Name=TCONS_00025925|organism=Clytia hemisphaerica|type=transcript|length=3614bp|location=Sequence derived from alignment at sc0000555:120826..124439+ (Clytia hemisphaerica)
ATTCTACATTCTCTTGATGCATTGAATGATACTCATGTTTTCTCTCATTT
TCAGAATAAgagacaaaaaataaatatagaaTAATAATCAAAATGAGTCG
TCGAAGAACAAATGGGAATGTTGAAACAGAGGATAAACCAAGTGTTTCAA
gtataataaaaaaatctttaacaacAGACTCCAACTGGGAGGATAAGGTA
ATTTCACagattaaatttaaaatagtaATGGAGTCATAGAGTTGTTACCT
CTAGTgttttataatataaaatataatatgTGCATGATTTTACTTAAGTT
ATTATAAGAAGCTTATAAGAAGGCTGGTAACAACAAATAATTCCACAGTC
GGGAATTGCATCAATCAGTATCATTATTCTCCTGGGATTTCTTGTAACAT
TCTCATTAAATTCTTTTCATTGCAGGATTCATTTTTAGATGTCATTTACT
GGGTACGACAAATTTTTGCTCTTTTCAACGGATTGGCATGGGGAGTTATC
CCTTTAACAGGAATACTTGGATTAGCTTTGTAAGTATTATACtttaatta
aatttaaaatggttttgtactttttctaaaaaaactgcACTTTTTTGCCT
TTAAAAANATGCttttattaaatttaaaatggttttgtactttttctaaa
aaaaaactgcccttttttgcctttaaaaaaattcttaattcttTGACGAG
GTTCggattgttcttatcctgttcatTCGTCTGATCGTCGTTTCAACCAA
CCATTTGAACCATTCCAGGTCCAGGTtttgttcttatcttgttcttgttt
ttttgtattattgaggttatttattttcataaaatttgtctaataaaaca
aaaatgtataCTCATGAGCAAAATATATAGTTTCTTCGACGAATGTGTCC
AAACTCGTTTAAGAGATTTTAAATCATCACAATctaatcttttgaaaata
acttcAAAAAACGtgctcatttaaaaaaaaaaaacattttattgatGTCA
GGTGTCAGAACACCTATGAGTTTTTTTAAAGGTGatgaaaataaagctta
aactTCATTAAACTGTCTGACTAAAAAATCTTCGTAAAGAAGAACGTTTG
taaatgtaacaaaattttgcgatatttttttcttttttatgggGACTTGA
AAAATCTATAATTATTGTTCTTCTCAACCAAAGTACTCCTTCagtaaaac
tcaaaaaaagacATTTCGTCAAATGAATATAAAATTTCCTATTGTCTTct
ataatattttctttattttttgcgTAGGTTTTTTGTTATCAATTGTGCAA
TAGTCTTCCTATATGTGAGTAGACAAAGTAAAATTGACGAAGACGAGTTT
GGTGGTATACAAGAGCTAGTCAAAGAGGGACTTTTCACTGCTTTTGCTGT
TTTTTTAGTAAGCTTTTTTTTCACTGACATCAACTCTCTATAGGCCTCAT
TAAGGGTGTATGACGTGGCACTGTCATAAAATATGGGTGATGAACTTTAG
AATCGGGCGAGAAGCCTGAACTTAGGCGTTTTAGAATGGGGGAGAGTCAA
AGACTTAGACTGCTTTAGAAATAAGAGAGCAAATTGTGAGATTTCCTAGG
AGGCCTTTTAAGGCCAGCAGCAAGATTCACGTCCCCTTAAGCCAAAGCCT
TGCTAAAAATTACGAAAAGAAGGAAGGGAGCATCGGAAGGAAAGGGCTAT
AAAGGAGGCGaggtttttaaagaaaagtgTGAGAATTTATCCTTCCTTTA
ACTTCAAAAAATGGAAGGGGTAGAGACTGAGGGGCTTCACAGTCACAGAG
ActagagatgaatcttcaacctttgtCAAGCAAGAAATAGTGAATCCTTA
AGTTTGCTCcacatttacaaattttgtttgaaaaacacacatGTTACGTG
TTTTGAAATCCTTGAGTTTCGGATCTAGCCCCTTCGAAGTTTTGAAGTCA
ATCTTCACAGTATAGATATCCTGGATATACAATACCTTtgaaacaggggg
gggggtcggtagtaaaatcttaGATGTATAATGAGTAGTAAATCGAATTT
TTATTTATCACCACCcggactcttggaagaggtattttactaccctggta
gtaaaagtttttgggataATTTGTCAttgagaccacctattttttggatg
cttttcggactgattttaaaaaaaagctaaaaaatgattatttctgtgac
agaTTTCtcacttagtgcaaaaattaatgttttgcccttagaattaaagt
cttttttatattgacaaaaaatttcgagaaccttttgtttgcagcaaacc
tGAGCAAACAACAATCTTTTGTTTGcaacaaacaactttccaacagaaaa
tgttttcaaattataaaaattttcagattttttcagaaaagttatccaaa
aaattaatttgccagttttaactacccaggtagtaaaattttttcaatat
ttaacacatagataccacccattttagtattcaactaccctgggtagtaa
aaacTTTTCGtaacaccaccaccgtagtaaacgtcattatgtctgagatt
ttactaccgaccccccccccNaattttaccagttttaactacccaggtag
taaaattttttcaacatgtaacacatagataccacccattttagtttttt
tcgatttttcgtcacaacaccaccgtagtaaacgtcattatgtctgatat
tttactaccgacccccccctgttTGAAACTCATTTTTATTTGGTGTTTGA
TAAATGATGGCATTAACGGATGTTAATATTTCCTTTATCTTTTTTTAGAT
AAGTTGGATAATGACATTCACGTATTTGCATGGATAAATTTGCTTACTCC
TCCAAATATGTAACTCTTTTATGCTGAAAAGAATTATGGGTAAAGCAGCA
TCTGCAAGTGTGAAAAAAAAAggcttaaaacatttttttttgagcAAAGG
TAAAACgatgtttttactttttactatCTATTTTATTAACCTTTCTGAAG
AGTTCTTTACCTAATTTGGGAATGAGGTTGGTAtggtattttatatttta
ggaaatttttctcatttttactcTTTCGACAACTTCCACCTAAAATCCAT
TATCACGAGAATATTTTTATTCCTTTTCCTGAATTCATTGGCTagttaaa
tttactttttttgctggaTACAATAACTATGAGATTTTCCGAAATATTTT
TCNCTCATTAGCTagttaaatttactttttttgctggaTACAATAAGAGA
TTTTCCATAATATTCTTCACTGCTAGATCGCCACTCTTTATTGAGCCTCG
TCCGAAAGTTTTATATTCATCATGtgaattttaaaatgtttcaaaacttt
tgcacactctaatcaaatttcaaaattgatatcAATGCAAGTATTTTTAG
AGAAAATGCCATTTTCTAAAGCCAAATAAGTACGTGTCCTCTTAGCCTGA
AGCCTTTTTTTATGCTACCAGAGAAggaatttttacttttcatcttacag
tcttttttaaacttttaggtAGAATGAAGAAATTTCTAGAAACTTTTAAG
TTTATAAACTTTATCTTAAAAAATATAACAACAACTACATTTTTAGATAG
ACAatagtattttt

Coding sequence (CDS) from alignment at sc0000555:120826..124439+

>TCONS_00025925 ID=TCONS_00025925|Name=TCONS_00025925|organism=Clytia hemisphaerica|type=CDS|length=1512bp|location=Sequence derived from alignment at sc0000555:120826..124439+ (Clytia hemisphaerica)
ATGAGTCGTCGAAGAACAAATGGGAATGTTGAAACAGAGGATAAACCAAG
TGTTTCAAgtataataaaaaaatctttaacaacAGACTCCAACTGGGAGG
ATAAGGATTCATTTTTAGATGTCATTTACTGGGTACGACAAATTTTTGCT
CTTTTCAACGGATTGGCATGGGGAGTTATCCCTTTAACAGGAATACTTGG
ATTAGCTTTGTTTTTTGTTATCAATTGTGCAATAGTCTTCCTATATGTGA
GTAGACAAAGTAAAATTGACGAAGACGAGTTTGGTGGTATACAAGAGCTA
GTCAAAGAGGGACTTTTCACTGCTTTTGCTGTTTTTTTAATAAGTTGGAT
AATGACATTCACGTATTTGCATGGATAAATGAGTCGTCGAAGAACAAATG
GGAATGTTGAAACAGAGGATAAACCAAGTGTTTCAAgtataataaaaaaa
tctttaacaacAGACTCCAACTGGGAGGATAAGGATTCATTTTTAGATGT
CATTTACTGGGTACGACAAATTTTTGCTCTTTTCAACGGATTGGCATGGG
GAGTTATCCCTTTAACAGGAATACTTGGATTAGCTTTGTTTTTTGTTATC
AATTGTGCAATAGTCTTCCTATATGTGAGTAGACAAAGTAAAATTGACGA
AGACGAGTTTGGTGGTATACAAGAGCTAGTCAAAGAGGGACTTTTCACTG
CTTTTGCTGTTTTTTTAATAAGTTGGATAATGACATTCACGTATTTGCAT
GGATAAATGAGTCGTCGAAGAACAAATGGGAATGTTGAAACAGAGGATAA
ACCAAGTGTTTCAAgtataataaaaaaatctttaacaacAGACTCCAACT
GGGAGGATAAGGATTCATTTTTAGATGTCATTTACTGGGTACGACAAATT
TTTGCTCTTTTCAACGGATTGGCATGGGGAGTTATCCCTTTAACAGGAAT
ACTTGGATTAGCTTTGTTTTTTGTTATCAATTGTGCAATAGTCTTCCTAT
ATGTGAGTAGACAAAGTAAAATTGACGAAGACGAGTTTGGTGGTATACAA
GAGCTAGTCAAAGAGGGACTTTTCACTGCTTTTGCTGTTTTTTTAATAAG
TTGGATAATGACATTCACGTATTTGCATGGATAAATGAGTCGTCGAAGAA
CAAATGGGAATGTTGAAACAGAGGATAAACCAAGTGTTTCAAgtataata
aaaaaatctttaacaacAGACTCCAACTGGGAGGATAAGGATTCATTTTT
AGATGTCATTTACTGGGTACGACAAATTTTTGCTCTTTTCAACGGATTGG
CATGGGGAGTTATCCCTTTAACAGGAATACTTGGATTAGCTTTGTTTTTT
GTTATCAATTGTGCAATAGTCTTCCTATATGTGAGTAGACAAAGTAAAAT
TGACGAAGACGAGTTTGGTGGTATACAAGAGCTAGTCAAAGAGGGACTTT
TCACTGCTTTTGCTGTTTTTTTAATAAGTTGGATAATGACATTCACGTAT
TTGCATGGATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_014579XLOC_014579Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00025925-exon-sc0000555-1491911889:120826..121022TCONS_00025925-exon-sc0000555-1491911889:120826..121022Clytia hemisphaericaexon
TCONS_00025925-exon-sc0000555-1510915933:120826..121022TCONS_00025925-exon-sc0000555-1510915933:120826..121022Clytia hemisphaericaexon
TCONS_00025925-exon-sc0000555-1575043694:120826..121022TCONS_00025925-exon-sc0000555-1575043694:120826..121022Clytia hemisphaericaexon
TCONS_00025925-exon-sc0000555-1491911889:121251..121354TCONS_00025925-exon-sc0000555-1491911889:121251..121354Clytia hemisphaericaexon
TCONS_00025925-exon-sc0000555-1510915933:121251..121354TCONS_00025925-exon-sc0000555-1510915933:121251..121354Clytia hemisphaericaexon
TCONS_00025925-exon-sc0000555-1575043694:121251..121354TCONS_00025925-exon-sc0000555-1575043694:121251..121354Clytia hemisphaericaexon
TCONS_00025925-exon-sc0000555-1491911889:122103..122232TCONS_00025925-exon-sc0000555-1491911889:122103..122232Clytia hemisphaericaexon
TCONS_00025925-exon-sc0000555-1510915933:122103..122232TCONS_00025925-exon-sc0000555-1510915933:122103..122232Clytia hemisphaericaexon
TCONS_00025925-exon-sc0000555-1575043694:122103..122232TCONS_00025925-exon-sc0000555-1575043694:122103..122232Clytia hemisphaericaexon
TCONS_00025925-exon-sc0000555-1491911889:123624..124439TCONS_00025925-exon-sc0000555-1491911889:123624..124439Clytia hemisphaericaexon
TCONS_00025925-exon-sc0000555-1510915933:123624..124439TCONS_00025925-exon-sc0000555-1510915933:123624..124439Clytia hemisphaericaexon
TCONS_00025925-exon-sc0000555-1575043694:123624..124439TCONS_00025925-exon-sc0000555-1575043694:123624..124439Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00025925-proteinTCONS_00025925-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000555supercontigsc0000555:120826..124439 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
11.1765	10.2989	2.36065	1.85519	53.5592	39.5915	48.7761	49.654	39.257	36.1753	22.9583	20.7371	11.5703	10.8355	18.3599	19.3697	24.3494	22.722	5.70428	6.46337	15.2343	15.2806	35.2308	33.7401	10.0915	13.7553	22.5895	12.8543	28.6417	23.9635
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR029008Rab5IP_fam
Blast
[Close]
BLAST of TCONS_00025925 vs. Swiss-Prot (Human)
Match: CT024 (Uncharacterized protein C20orf24 OS=Homo sapiens GN=C20orf24 PE=2 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 9.609e-30
Identity = 57/126 (45.24%), Postives = 78/126 (61.90%), Query Frame = 3 
Query:  111 NGNVETEDKPSVS--------SIIKKSLTTDSNWEDKDSFLDVIYWVRQIFALFNGLAWGVIPLTGILGLALFFVINCAIVFLYVSRQSKIDEDEFGGIQELVKEGLFTAFAVFLISWIMTFTYLH 464
            +G    E+ P           S+  K L +D+ WEDKD FLDVIYW RQI A+  G+ WGV+PL G LG+A F +IN  +++LY S   +IDE+E+GG  EL KEG  T+FA+F++    +FT  H
Sbjct:    2 SGGRRKEEPPQPQLANGALKVSVWSKVLRSDAAWEDKDEFLDVIYWFRQIIAVVLGVIWGVLPLRGFLGIAGFCLINAGVLYLYFSNYLQIDEEEYGGTWELTKEGFMTSFALFMVCVADSFTTGH 127
The following BLAST results are available for this feature:
BLAST of TCONS_00025925 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CT0249.609e-3045.24Uncharacterized protein C20orf24 OS=Homo sapiens G... [more]
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