TCONS_00025914 (transcript) - C. hemisphaerica

Overview
NameTCONS_00025914
Unique NameTCONS_00025914
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length522

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00025914 ID=TCONS_00025914|Name=TCONS_00025914|organism=Clytia hemisphaerica|type=transcript|length=522bp
TTGCCCTTTGGTTTAGCTGTTTTAATAGTTGggtctctctctctctcatg
CCACAGTCCTTCAGGTCTACTAGACAGTCATCCAGCCAGAGTTGCTCGAA
ACACTTTTCTGCATCGGCGCAAAAAATTCCTCTCCTGTTCTTCATTTCTG
TCTTCTTTCCcttgtttttataaattgaCTTGACGGTTACTTTTTCCCAC
TGCTCTGGTATAATCATGTTCCTGAAGATTTCGTTGAATATAATTTTCAG
TGATTTGATCATCTCACCACCTCCCTCTTTCAACATCTCATTCCTCCATC
CTCCAGAATCAGGTGCCTTTCTTCTTTTCAGCTTTCTTACTACGTCATTT
ATCTCTTTCTTGGTTACGGTTAGGGCTTCCTGTGTATTTGCCACTTCTTT
CATGCTTTTGATCTTTTTCTCTACTGTCGATTCTGATTTCATTTGGGCTT
CATTAAAAGACTCTTTGTCTGTTTTTTTAAACAGGTCCACATAGAACTTT
TTGAAGACATCAACAATCTTGC
Run BLAST on NCBI

protein sequence of TCONS_00025914-protein

>TCONS_00025914-protein ID=TCONS_00025914-protein|Name=TCONS_00025914-protein|organism=Clytia hemisphaerica|type=polypeptide|length=173bp
KIVDVFKKFYVDLFKKTDKESFNEAQMKSESTVEKKIKSMKEVANTQEAL
TVTKKEINDVVRKLKRRKAPDSGGWRNEMLKEGGGEMIKSLKIIFNEIFR
NMIIPEQWEKVTVKSIYKNKGKKTEMKNRRGIFCADAEKCFEQLWLDDCL
VDLKDCGMRERETQLLKQLNQRA
Run BLAST on NCBI

transcript from alignment at sc0000550:171214..171735

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00025914 ID=TCONS_00025914|Name=TCONS_00025914|organism=Clytia hemisphaerica|type=transcript|length=522bp|location=Sequence derived from alignment at sc0000550:171214..171735 (Clytia hemisphaerica)
GCAAGATTGTTGATGTCTTCAAAAAGTTCTATGTGGACCTGTTTAAAAAA
ACAGACAAAGAGTCTTTTAATGAAGCCCAAATGAAATCAGAATCGACAGT
AGAGAAAAAGATCAAAAGCATGAAAGAAGTGGCAAATACACAGGAAGCCC
TAACCGTAACCAAGAAAGAGATAAATGACGTAGTAAGAAAGCTGAAAAGA
AGAAAGGCACCTGATTCTGGAGGATGGAGGAATGAGATGTTGAAAGAGGG
AGGTGGTGAGATGATCAAATCACTGAAAATTATATTCAACGAAATCTTCA
GGAACATGATTATACCAGAGCAGTGGGAAAAAGTAACCGTCAAGtcaatt
tataaaaacaagGGAAAGAAGACAGAAATGAAGAACAGGAGAGGAATTTT
TTGCGCCGATGCAGAAAAGTGTTTCGAGCAACTCTGGCTGGATGACTGTC
TAGTAGACCTGAAGGACTGTGGcatgagagagagagagaccCAACTATTA
AAACAGCTAAACCAAAGGGCAA

Coding sequence (CDS) from alignment at sc0000550:171214..171735

>TCONS_00025914 ID=TCONS_00025914|Name=TCONS_00025914|organism=Clytia hemisphaerica|type=CDS|length=519bp|location=Sequence derived from alignment at sc0000550:171214..171735 (Clytia hemisphaerica)
AAGATTGTTGATGTCTTCAAAAAGTTCTATGTGGACCTGTTTAAAAAAAC
AGACAAAGAGTCTTTTAATGAAGCCCAAATGAAATCAGAATCGACAGTAG
AGAAAAAGATCAAAAGCATGAAAGAAGTGGCAAATACACAGGAAGCCCTA
ACCGTAACCAAGAAAGAGATAAATGACGTAGTAAGAAAGCTGAAAAGAAG
AAAGGCACCTGATTCTGGAGGATGGAGGAATGAGATGTTGAAAGAGGGAG
GTGGTGAGATGATCAAATCACTGAAAATTATATTCAACGAAATCTTCAGG
AACATGATTATACCAGAGCAGTGGGAAAAAGTAACCGTCAAGtcaattta
taaaaacaagGGAAAGAAGACAGAAATGAAGAACAGGAGAGGAATTTTTT
GCGCCGATGCAGAAAAGTGTTTCGAGCAACTCTGGCTGGATGACTGTCTA
GTAGACCTGAAGGACTGTGGcatgagagagagagagaccCAACTATTAAA
ACAGCTAAACCAAAGGGCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_014572XLOC_014572Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00025914-proteinTCONS_00025914-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00025914-exon-sc0000550-1491911889:171214..171735TCONS_00025914-exon-sc0000550-1491911889:171214..171735Clytia hemisphaericaexon
TCONS_00025914-exon-sc0000550-1510915933:171214..171735TCONS_00025914-exon-sc0000550-1510915933:171214..171735Clytia hemisphaericaexon
TCONS_00025914-exon-sc0000550-1575043694:171214..171735TCONS_00025914-exon-sc0000550-1575043694:171214..171735Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000550supercontigsc0000550:171214..171735 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.04502	1.88683	2.701	2.71779	2.23961	2.01315	2.04016	4.02628	1.05067	1.26014	1.9351	1.9941	1.38027	0.662338	1.27051	1.22047	1.17222	0.734952	0.64056	1.62659	1.55705	1.82973	0.690911	0.354463	2.03139	1.34018	1.55821	1.12995	0.754841	0.705951
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR008919Retrov_capsid_N
Vocabulary: Biological Process
TermDefinition
GO:0016032viral process
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0016032 viral process
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00025914 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top