TCONS_00025909 (transcript) - C. hemisphaerica

Overview
NameTCONS_00025909
Unique NameTCONS_00025909
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length380

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00025909 ID=TCONS_00025909|Name=TCONS_00025909|organism=Clytia hemisphaerica|type=transcript|length=380bp
CAAGACCTCTTTTGCCTTAGCAATTAAGGAAATTGAAAGTGTGTTTGATG
TCCCAGAGGAAACAGTTATTAGAAGACGCAAGCTTCATAGCATCAAGCAA
GGAGATTCGTCCTTACTTACTTACCTTGAGGAATTAGAGTTCCTCTTTAC
TGAACTGGAAGTACCAGAGAATCGACAACTCGATTTCTTATTGGCTGGAT
TAAGACCTGACTTGCAAGACTTTGTCTGTCTTAAACAGTTTAAGACCTAC
AACGATACAGTGAAGGCCCTCAAGCTAAAGGNGTCTACTTTGTTCTACTG
TCACTCTGAATTCCATTGTACATTCAAGTCCTCCCCGTCTTCTAGCGGCG
GGTCAGATCTTAAACGCCTGGggcagaaaa
Run BLAST on NCBI

protein sequence of TCONS_00025909-protein

>TCONS_00025909-protein ID=TCONS_00025909-protein|Name=TCONS_00025909-protein|organism=Clytia hemisphaerica|type=polypeptide|length=126bp
KTSFALAIKEIESVFDVPEETVIRRRKLHSIKQGDSSLLTYLEELEFLFT
ELEVPENRQLDFLLAGLRPDLQDFVCLKQFKTYNDTVKALKLKXSTLFYC
HSEFHCTFKSSPSSSGGSDLKRLGQK
Run BLAST on NCBI

transcript from alignment at sc0000550:128284..128663

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00025909 ID=TCONS_00025909|Name=TCONS_00025909|organism=Clytia hemisphaerica|type=transcript|length=380bp|location=Sequence derived from alignment at sc0000550:128284..128663 (Clytia hemisphaerica)
ttttctgccCCAGGCGTTTAAGATCTGACCCGCCGCTAGAAGACGGGGAG
GACTTGAATGTACAATGGAATTCAGAGTGACAGTAGAACAAAGTAGACNC
CTTTAGCTTGAGGGCCTTCACTGTATCGTTGTAGGTCTTAAACTGTTTAA
GACAGACAAAGTCTTGCAAGTCAGGTCTTAATCCAGCCAATAAGAAATCG
AGTTGTCGATTCTCTGGTACTTCCAGTTCAGTAAAGAGGAACTCTAATTC
CTCAAGGTAAGTAAGTAAGGACGAATCTCCTTGCTTGATGCTATGAAGCT
TGCGTCTTCTAATAACTGTTTCCTCTGGGACATCAAACACACTTTCAATT
TCCTTAATTGCTAAGGCAAAAGAGGTCTTG

Coding sequence (CDS) from alignment at sc0000550:128284..128663

>TCONS_00025909 ID=TCONS_00025909|Name=TCONS_00025909|organism=Clytia hemisphaerica|type=CDS|length=378bp|location=Sequence derived from alignment at sc0000550:128284..128663 (Clytia hemisphaerica)
tttctgccCCAGGCGTTTAAGATCTGACCCGCCGCTAGAAGACGGGGAGG
ACTTGAATGTACAATGGAATTCAGAGTGACAGTAGAACAAAGTAGACNCC
TTTAGCTTGAGGGCCTTCACTGTATCGTTGTAGGTCTTAAACTGTTTAAG
ACAGACAAAGTCTTGCAAGTCAGGTCTTAATCCAGCCAATAAGAAATCGA
GTTGTCGATTCTCTGGTACTTCCAGTTCAGTAAAGAGGAACTCTAATTCC
TCAAGGTAAGTAAGTAAGGACGAATCTCCTTGCTTGATGCTATGAAGCTT
GCGTCTTCTAATAACTGTTTCCTCTGGGACATCAAACACACTTTCAATTT
CCTTAATTGCTAAGGCAAAAGAGGTCTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_014567XLOC_014567Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00025909-proteinTCONS_00025909-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00025909-exon-sc0000550-1491911889:128284..128663TCONS_00025909-exon-sc0000550-1491911889:128284..128663Clytia hemisphaericaexon
TCONS_00025909-exon-sc0000550-1510915933:128284..128663TCONS_00025909-exon-sc0000550-1510915933:128284..128663Clytia hemisphaericaexon
TCONS_00025909-exon-sc0000550-1575043694:128284..128663TCONS_00025909-exon-sc0000550-1575043694:128284..128663Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000550supercontigsc0000550:128284..128663 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	1.39894	0.884368	1.9996	1.95359	2.21202	1.97749	0.509289	1.29983	42.3047	37.7535	5.48146	2.97734	0.17844	1.10611	2.62955	7.77474	2.14217	3.01981	0.237884	1.30411	0.891015	3.42597	0.429836	0.90692	0.354891	0.469234
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00025909 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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