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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00025908 ID=TCONS_00025908|Name=TCONS_00025908|organism=Clytia hemisphaerica|type=transcript|length=2977bp
GCCGTATCTTTTCCACAATTAAACTGATATGGTtagaaaaattaggaaaa
taaaCTATATAATAAATACATCATTTTCGAAATTTAACTTCCCGGTAAAA
CAGTGATTAAAATTTATCTCCAGGCCTCAATGTCCAAACGATATTTCTGG
AAGTAGATATAATTACAgcagaaaacccaaaaatatgattcttagCTCTT
CTTGAAAAATCCAGACCTTTCTCGTTCTATTTTACTTTACAAGTCGACAA
CCGACATTTTCAAATTCTTATTGGCCTAGAAAAACCATACCAAGCGAAAA
AGATTCTTAAAATGTTAatcaaaaaagaatcaaaacaaatgcATAGGACA
AGCTTTATCTTACAATTAATGAGCAGTAATGAGGAGGATAAAGGTTAGAT
AAGATTCTAAACAATGAAGTTCAAGGGACTAATAggccacttttcgccct
gcctattctaattgtaaaaCATAGTGGACGTAGCAAGTTGGCTAAaatct
aaagtcaatgcattgccctcttttgatgCCAATGCAATcccttctttcaa
tcttttccaagccaaagattttaactgtcaGCTTTCTGCATATTCtgaca
attagaataggcagggcagaaagtcggtcGTCTACACAAGAACTTATTCT
TCTCCTTCACCATGTTCAACGATCGATTCTCCTTCTTCATCTTCTGGTTC
ATCTTCACAAGACTCCATTTCAAAAATACGCACACGTCGACCATTACTCG
CTATCACGCAACTCACGCTACGCCCTTCGTTCACGCTCACACTGGCCGCG
TGGAAATTATCAAGCGTACGTGACTCCGTGAACTCGTCTTTCACGTTTAA
CCACTGAACGTCGAGATCTTCGGAATCTAACAATCCTTCAACGTTGGATA
ATTTACTGCATTTGGTGAATGTCAATTTCTCAATAGTGTCGTCTAACGGT
AATTGACTGAGAACGCTAATCGGTTGATTATCACTTTCCGGTTCAGATGT
TTCATGTAAGATCGTCATTGTTTCGTTACCGTAAAATGTGGAATATCTCA
TTGTGTATTGCGGTAAATCGCCAGCGTTAGATTCGTCCATTTCTTCAAGT
TTTGGTGCTTCGATGCATAAACCTGCAATGTTGACATCTTCAGGATTTGA
TGTCAACTCGAGTAAGAACATACGATCGCTGTCACATGAGCAAGCTAGGA
TTGAGGCTAAAAGACGGTCTTCACGGTCTAGGTAGGAGATTACAGGAGAG
CAGTTTTCATCGTGCCCATCAGCTGCTGCAAATAATTTGATGGAGGAGGT
TAGACTTACGGAAGCCGAAAGAGCGGTAACCGTATCCGTGAAAATGGCGT
CGAAGCTGCTTTCGAGATCTTTGAATTGGGAAACTAGGGAGGCGCGGTGA
TCTGGAACTAACACAAATGGATGATCTTTCAAACATTCTTTAGTGTTGAT
ATATTCATACCAAATATTTTGGTCGACATCATTAAACAAAGTGGATGTTT
TCGCAATctcatcattaaaaaaatgtgaTATACGCTCCAGATTGAAAGTT
CCTTGTGACGTCTTCTGAAGCCTGTTTTCAAGAAAGTCGACCATAACGTC
AAACTCCTTGAAAGAAAGTTGCGGGTAATTAGCTGACATCTCGTTGCTGA
CTTGAAAACATAAACAAGTCAGCCATGTAAAAAAGATACTAAAATCTTCC
ATGTCAGAGCAAATTACTTCCAAAAGTTTTAATACACGCATTGCGAAAGT
ACCTAGTTTACTTAAACACGATATGACTGACTTTTCATTGAGTCCAATCT
CTTGAAAATGTTCTGTCCATTTCGACATTCCgtaaatttgcagtaaataa
acCATTGAATGTTGGATCAATAGCTCCATCTCTTCGGTAATATCAGAATG
CATGCTTGCATAGGCTAGTTGTACACTCTGTTCGATTTGTTTCAAACCCT
TGGATGTTAAGTTCTGTGTTAAAAAAGTCTCAAGCTCAGGACTTGTTTCT
CCTGTGGCATAAGCTATGGTGAATTCAGCTGCAACGCTACTTTCAGCTGG
GCTGACTAGTTTCTCCAGTTTATCGAGCTTTGTGTTGATTTTCAAACTGA
TGTCCTCGGAAGAATCGGACATCTGCTTAAGAACTTTGTCAGAACGTTTA
AGCAGATAGTGAAGCTGTGTATACGCTCTGGACAGTAAACACAATTCTTG
ACTTCTTGATAACAAATGAGGACAATGAAAACGATGCAAATAAAACGAAT
CAGTTTCCCCATCAGACGTTTTAGATTTTGATACAAGAGTCAATAAAGCT
GTCTTTGGTGAAAAATGACAAGCAACAACTTTGTGGCTTTCAAATTGAAT
GGGATATTTCTCCAGAGACATTTCAAGCACTTTGAAAATACCATCCAAAT
AAAGATGAAGGTTGCCATTAGCTGTGGTTACAATCAAGAAACATTGATGT
CCGTGGTCAGATGTCATTGTCTCACCCTGTGATAAATAAGTAGCAAGTTC
CTCTTTATGTATATGCGGTAGATACTCAGTATGTGCGTCCACACTCGAGC
CtggtttttcattcaaatcaaCATGAATCCAGTCTAGTGATTTGATTTCT
GAGCCTAAACTAAGCGAATGAACAACGGCAGCCTTTTCGATTTCAATAAT
AGAGACTGTCCCATTCTGGTGACCCACTACTAGCAGCTTTGCACTACTTT
TCCATGAATGACTGGTCGTTTTCCACGAGCAGCAAACAGCAGTGAAATTA
CCCACACTTTTTGCCATTGCATACGATGCAGACGGATATCTCCGTTTTTG
GTTACCACAGCAACCAAATCATGTAGCGGACTCCATTTAGCCTGTAAAAT
ACCATTATTACATGGTTTATCACAGACCTGTCGGAAAGATGTCGCCATTG
TTCCGTTTATTTGTCTTGTATTTAGttgttgtttctttcttttttggatt
tgtttatttttttatctcatactaaaa Run BLAST on NCBI protein sequence of TCONS_00025908-protein >TCONS_00025908-protein ID=TCONS_00025908-protein|Name=TCONS_00025908-protein|organism=Clytia hemisphaerica|type=polypeptide|length=707bp
MAKSVGNFTAVCCSWKTTSHSWKSSAKLLVVGHQNGTVSIIEIEKAAVVH
SLSLGSEIKSLDWIHVDLNEKPGSSVDAHTEYLPHIHKEELATYLSQGET
MTSDHGHQCFLIVTTANGNLHLYLDGIFKVLEMSLEKYPIQFESHKVVAC
HFSPKTALLTLVSKSKTSDGETDSFYLHRFHCPHLLSRSQELCLLSRAYT
QLHYLLKRSDKVLKQMSDSSEDISLKINTKLDKLEKLVSPAESSVAAEFT
IAYATGETSPELETFLTQNLTSKGLKQIEQSVQLAYASMHSDITEEMELL
IQHSMVYLLQIYGMSKWTEHFQEIGLNEKSVISCLSKLGTFAMRVLKLLE
VICSDMEDFSIFFTWLTCLCFQVSNEMSANYPQLSFKEFDVMVDFLENRL
QKTSQGTFNLERISHFFNDEIAKTSTLFNDVDQNIWYEYINTKECLKDHP
FVLVPDHRASLVSQFKDLESSFDAIFTDTVTALSASVSLTSSIKLFAAAD
GHDENCSPVISYLDREDRLLASILACSCDSDRMFLLELTSNPEDVNIAGL
CIEAPKLEEMDESNAGDLPQYTMRYSTFYGNETMTILHETSEPESDNQPI
SVLSQLPLDDTIEKLTFTKCSKLSNVEGLLDSEDLDVQWLNVKDEFTESR
TLDNFHAASVSVNEGRSVSCVIASNGRRVRIFEMESCEDEPEDEEGESIV
EHGEGEE Run BLAST on NCBI transcript from alignment at sc0000550:119039..122015 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00025908 ID=TCONS_00025908|Name=TCONS_00025908|organism=Clytia hemisphaerica|type=transcript|length=2977bp|location=Sequence derived from alignment at sc0000550:119039..122015 (Clytia hemisphaerica)
ttttagtatgagataaaaaaataaacaaatccaaaaaagaaagaaacaac
aaCTAAATACAAGACAAATAAACGGAACAATGGCGACATCTTTCCGACAG
GTCTGTGATAAACCATGTAATAATGGTATTTTACAGGCTAAATGGAGTCC
GCTACATGATTTGGTTGCTGTGGTAACCAAAAACGGAGATATCCGTCTGC
ATCGTATGCAATGGCAAAAAGTGTGGGTAATTTCACTGCTGTTTGCTGCT
CGTGGAAAACGACCAGTCATTCATGGAAAAGTAGTGCAAAGCTGCTAGTA
GTGGGTCACCAGAATGGGACAGTCTCTATTATTGAAATCGAAAAGGCTGC
CGTTGTTCATTCGCTTAGTTTAGGCTCAGAAATCAAATCACTAGACTGGA
TTCATGttgatttgaatgaaaaaccaGGCTCGAGTGTGGACGCACATACT
GAGTATCTACCGCATATACATAAAGAGGAACTTGCTACTTATTTATCACA
GGGTGAGACAATGACATCTGACCACGGACATCAATGTTTCTTGATTGTAA
CCACAGCTAATGGCAACCTTCATCTTTATTTGGATGGTATTTTCAAAGTG
CTTGAAATGTCTCTGGAGAAATATCCCATTCAATTTGAAAGCCACAAAGT
TGTTGCTTGTCATTTTTCACCAAAGACAGCTTTATTGACTCTTGTATCAA
AATCTAAAACGTCTGATGGGGAAACTGATTCGTTTTATTTGCATCGTTTT
CATTGTCCTCATTTGTTATCAAGAAGTCAAGAATTGTGTTTACTGTCCAG
AGCGTATACACAGCTTCACTATCTGCTTAAACGTTCTGACAAAGTTCTTA
AGCAGATGTCCGATTCTTCCGAGGACATCAGTTTGAAAATCAACACAAAG
CTCGATAAACTGGAGAAACTAGTCAGCCCAGCTGAAAGTAGCGTTGCAGC
TGAATTCACCATAGCTTATGCCACAGGAGAAACAAGTCCTGAGCTTGAGA
CTTTTTTAACACAGAACTTAACATCCAAGGGTTTGAAACAAATCGAACAG
AGTGTACAACTAGCCTATGCAAGCATGCATTCTGATATTACCGAAGAGAT
GGAGCTATTGATCCAACATTCAATGgtttatttactgcaaatttacGGAA
TGTCGAAATGGACAGAACATTTTCAAGAGATTGGACTCAATGAAAAGTCA
GTCATATCGTGTTTAAGTAAACTAGGTACTTTCGCAATGCGTGTATTAAA
ACTTTTGGAAGTAATTTGCTCTGACATGGAAGATTTTAGTATCTTTTTTA
CATGGCTGACTTGTTTATGTTTTCAAGTCAGCAACGAGATGTCAGCTAAT
TACCCGCAACTTTCTTTCAAGGAGTTTGACGTTATGGTCGACTTTCTTGA
AAACAGGCTTCAGAAGACGTCACAAGGAACTTTCAATCTGGAGCGTATAt
cacatttttttaatgatgagATTGCGAAAACATCCACTTTGTTTAATGAT
GTCGACCAAAATATTTGGTATGAATATATCAACACTAAAGAATGTTTGAA
AGATCATCCATTTGTGTTAGTTCCAGATCACCGCGCCTCCCTAGTTTCCC
AATTCAAAGATCTCGAAAGCAGCTTCGACGCCATTTTCACGGATACGGTT
ACCGCTCTTTCGGCTTCCGTAAGTCTAACCTCCTCCATCAAATTATTTGC
AGCAGCTGATGGGCACGATGAAAACTGCTCTCCTGTAATCTCCTACCTAG
ACCGTGAAGACCGTCTTTTAGCCTCAATCCTAGCTTGCTCATGTGACAGC
GATCGTATGTTCTTACTCGAGTTGACATCAAATCCTGAAGATGTCAACAT
TGCAGGTTTATGCATCGAAGCACCAAAACTTGAAGAAATGGACGAATCTA
ACGCTGGCGATTTACCGCAATACACAATGAGATATTCCACATTTTACGGT
AACGAAACAATGACGATCTTACATGAAACATCTGAACCGGAAAGTGATAA
TCAACCGATTAGCGTTCTCAGTCAATTACCGTTAGACGACACTATTGAGA
AATTGACATTCACCAAATGCAGTAAATTATCCAACGTTGAAGGATTGTTA
GATTCCGAAGATCTCGACGTTCAGTGGTTAAACGTGAAAGACGAGTTCAC
GGAGTCACGTACGCTTGATAATTTCCACGCGGCCAGTGTGAGCGTGAACG
AAGGGCGTAGCGTGAGTTGCGTGATAGCGAGTAATGGTCGACGTGTGCGT
ATTTTTGAAATGGAGTCTTGTGAAGATGAACCAGAAGATGAAGAAGGAGA
ATCGATCGTTGAACATGGTGAAGGAGAAGAATAAGTTCTTGTGTAGACga
ccgactttctgccctgcctattctaattgtcaGAATATGCAGAAAGCtga
cagttaaaatctttggcttggaaaagattgaaagaagggATTGCATTGGc
atcaaaagagggcaatgcattgactttagattTTAGCCAACTTGCTACGT
CCACTATGttttacaattagaataggcagggcgaaaagtggccTATTAGT
CCCTTGAACTTCATTGTTTAGAATCTTATCTAACCTTTATCCTCCTCATT
ACTGCTCATTAATTGTAAGATAAAGCTTGTCCTATgcatttgttttgatt
cttttttgatTAACATTTTAAGAATCTTTTTCGCTTGGTATGGTTTTTCT
AGGCCAATAAGAATTTGAAAATGTCGGTTGTCGACTTGTAAAGTAAAATA
GAACGAGAAAGGTCTGGATTTTTCAAGAAGAGctaagaatcatatttttg
ggttttctgcTGTAATTATATCTACTTCCAGAAATATCGTTTGGACATTG
AGGCCTGGAGATAAATTTTAATCACTGTTTTACCGGGAAGTTAAATTTCG
AAAATGATGTATTTATTATATAGtttattttcctaatttttctaACCATA
TCAGTTTAATTGTGGAAAAGATACGGC Coding sequence (CDS) from alignment at sc0000550:119039..122015 >TCONS_00025908 ID=TCONS_00025908|Name=TCONS_00025908|organism=Clytia hemisphaerica|type=CDS|length=2124bp|location=Sequence derived from alignment at sc0000550:119039..122015 (Clytia hemisphaerica)
ATGGCAAAAAGTGTGGGTAATTTCACTGCTGTTTGCTGCTCGTGGAAAAC
GACCAGTCATTCATGGAAAAGTAGTGCAAAGCTGCTAGTAGTGGGTCACC
AGAATGGGACAGTCTCTATTATTGAAATCGAAAAGGCTGCCGTTGTTCAT
TCGCTTAGTTTAGGCTCAGAAATCAAATCACTAGACTGGATTCATGttga
tttgaatgaaaaaccaGGCTCGAGTGTGGACGCACATACTGAGTATCTAC
CGCATATACATAAAGAGGAACTTGCTACTTATTTATCACAGGGTGAGACA
ATGACATCTGACCACGGACATCAATGTTTCTTGATTGTAACCACAGCTAA
TGGCAACCTTCATCTTTATTTGGATGGTATTTTCAAAGTGCTTGAAATGT
CTCTGGAGAAATATCCCATTCAATTTGAAAGCCACAAAGTTGTTGCTTGT
CATTTTTCACCAAAGACAGCTTTATTGACTCTTGTATCAAAATCTAAAAC
GTCTGATGGGGAAACTGATTCGTTTTATTTGCATCGTTTTCATTGTCCTC
ATTTGTTATCAAGAAGTCAAGAATTGTGTTTACTGTCCAGAGCGTATACA
CAGCTTCACTATCTGCTTAAACGTTCTGACAAAGTTCTTAAGCAGATGTC
CGATTCTTCCGAGGACATCAGTTTGAAAATCAACACAAAGCTCGATAAAC
TGGAGAAACTAGTCAGCCCAGCTGAAAGTAGCGTTGCAGCTGAATTCACC
ATAGCTTATGCCACAGGAGAAACAAGTCCTGAGCTTGAGACTTTTTTAAC
ACAGAACTTAACATCCAAGGGTTTGAAACAAATCGAACAGAGTGTACAAC
TAGCCTATGCAAGCATGCATTCTGATATTACCGAAGAGATGGAGCTATTG
ATCCAACATTCAATGgtttatttactgcaaatttacGGAATGTCGAAATG
GACAGAACATTTTCAAGAGATTGGACTCAATGAAAAGTCAGTCATATCGT
GTTTAAGTAAACTAGGTACTTTCGCAATGCGTGTATTAAAACTTTTGGAA
GTAATTTGCTCTGACATGGAAGATTTTAGTATCTTTTTTACATGGCTGAC
TTGTTTATGTTTTCAAGTCAGCAACGAGATGTCAGCTAATTACCCGCAAC
TTTCTTTCAAGGAGTTTGACGTTATGGTCGACTTTCTTGAAAACAGGCTT
CAGAAGACGTCACAAGGAACTTTCAATCTGGAGCGTATAtcacatttttt
taatgatgagATTGCGAAAACATCCACTTTGTTTAATGATGTCGACCAAA
ATATTTGGTATGAATATATCAACACTAAAGAATGTTTGAAAGATCATCCA
TTTGTGTTAGTTCCAGATCACCGCGCCTCCCTAGTTTCCCAATTCAAAGA
TCTCGAAAGCAGCTTCGACGCCATTTTCACGGATACGGTTACCGCTCTTT
CGGCTTCCGTAAGTCTAACCTCCTCCATCAAATTATTTGCAGCAGCTGAT
GGGCACGATGAAAACTGCTCTCCTGTAATCTCCTACCTAGACCGTGAAGA
CCGTCTTTTAGCCTCAATCCTAGCTTGCTCATGTGACAGCGATCGTATGT
TCTTACTCGAGTTGACATCAAATCCTGAAGATGTCAACATTGCAGGTTTA
TGCATCGAAGCACCAAAACTTGAAGAAATGGACGAATCTAACGCTGGCGA
TTTACCGCAATACACAATGAGATATTCCACATTTTACGGTAACGAAACAA
TGACGATCTTACATGAAACATCTGAACCGGAAAGTGATAATCAACCGATT
AGCGTTCTCAGTCAATTACCGTTAGACGACACTATTGAGAAATTGACATT
CACCAAATGCAGTAAATTATCCAACGTTGAAGGATTGTTAGATTCCGAAG
ATCTCGACGTTCAGTGGTTAAACGTGAAAGACGAGTTCACGGAGTCACGT
ACGCTTGATAATTTCCACGCGGCCAGTGTGAGCGTGAACGAAGGGCGTAG
CGTGAGTTGCGTGATAGCGAGTAATGGTCGACGTGTGCGTATTTTTGAAA
TGGAGTCTTGTGAAGATGAACCAGAAGATGAAGAAGGAGAATCGATCGTT
GAACATGGTGAAGGAGAAGAATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00025908-exon-sc0000550-1491911889:119039..122015 | TCONS_00025908-exon-sc0000550-1491911889:119039..122015 | Clytia hemisphaerica | exon |
| TCONS_00025908-exon-sc0000550-1510915933:119039..122015 | TCONS_00025908-exon-sc0000550-1510915933:119039..122015 | Clytia hemisphaerica | exon |
| TCONS_00025908-exon-sc0000550-1575043694:119039..122015 | TCONS_00025908-exon-sc0000550-1575043694:119039..122015 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000550 | supercontig | sc0000550:119039..122015 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005515 | protein binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0005515 |
protein binding |
Blast
BLAST of TCONS_00025908 vs. Swiss-Prot (Human)
Match: APC4 (Anaphase-promoting complex subunit 4 OS=Homo sapiens GN=ANAPC4 PE=1 SV=2) HSP 1 Score: 112.849 bits (281), Expect = 2.763e-25 Identity = 87/360 (24.17%), Postives = 180/360 (50.00%), Query Frame = -1
Query: 1385 LIVTTANGNLHLYLDGIFKVLEMSLEKYPIQFESHKVVACHFSPKTALLTLVSKSKTSDGETDSFYLHRFHCPHLLSRSQELCLLSRAYTQLHYLLKRSDKVLKQMSDSSEDISLKINTKLDKL--EKLVSPAESSVAAEFTIAYATGETSPELETFLTQNLTSKGLKQIEQSVQLAYASMHSDITEEMELLIQHSMVYLLQIYGMSKWTEHFQEIGLNEKSVISCLSKLGTFAMRVLKLLEVICSDMEDFSIFFTWLTCLCFQVSNE-MSANYPQLSFKEFDVMVDFLENRLQKT-----SQGT-FNLERISHFFNDEIAKTSTLFNDVDQNIWYEYINTKECLKDHPFVLVPDHRASL 2437
L++ ++G + LY G+FK+ + + +A S L++V++ T+ S++ + L S E+ ++R +T + LL+ + L M ++ E+I ++++++L K EK + +SV EF G+ S EL+T L LT KGLK++ QS++ +Y+S+ + ++ + + +L ++ GM+ W + ++ +GL+ + ++ +G+F ++ +LL+VI S M++F FF WL +++ + + +++ K+ + +FL + +G FN+ER+ + DE + N + N WY+++ LK+ P + R SL
Sbjct: 176 LVLGGSSGFIELYAYGMFKIAR-------VTGIAGTCLALCLSSDLKSLSVVTEVSTNGASEVSYF--QLETNLLYSFLPEVTRMARKFTHISALLQYINLSLTCMCEAWEEILMQMDSRLTKFVQEKNTT---TSVQDEFMHLLLWGKASAELQTLLMNQLTVKGLKKLGQSIESSYSSIQKLVISHLQSGSESLLYHLSELKGMASWKQKYEPLGLDAAGIEEAITAVGSFILKANELLQVIDSSMKNFKAFFRWLYVAMLRMTEDHVLPELNKMTQKDITFVAEFLTEHFNEAPDLYNRKGKYFNVERVGQYLKDEDDDLVSPPN-TEGNQWYDFLQNSSHLKESPLLFPYYPRKSL 522
The following BLAST results are available for this feature:
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