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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00025882 ID=TCONS_00025882|Name=TCONS_00025882|organism=Clytia hemisphaerica|type=transcript|length=4144bpRun BLAST on NCBI protein sequence of TCONS_00025882-protein >TCONS_00025882-protein ID=TCONS_00025882-protein|Name=TCONS_00025882-protein|organism=Clytia hemisphaerica|type=polypeptide|length=771bp MSIQGRKHNAEDIKATVLAVDPVKHVHRGRIAVFSVSVLREDRIVIVVEQRun BLAST on NCBI transcript from alignment at sc0000550:78494..87445- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00025882 ID=TCONS_00025882|Name=TCONS_00025882|organism=Clytia hemisphaerica|type=transcript|length=8952bp|location=Sequence derived from alignment at sc0000550:78494..87445- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000550:78494..87445- >TCONS_00025882 ID=TCONS_00025882|Name=TCONS_00025882|organism=Clytia hemisphaerica|type=CDS|length=25476bp|location=Sequence derived from alignment at sc0000550:78494..87445- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00025882 vs. Swiss-Prot (Human)
Match: DIP2C (Disco-interacting protein 2 homolog C OS=Homo sapiens GN=DIP2C PE=1 SV=2) HSP 1 Score: 969.918 bits (2506), Expect = 0.000e+0 Identity = 503/802 (62.72%), Postives = 622/802 (77.56%), Query Frame = 1
Query: 427 GVPSNEN-YVRTXXXXXXXXXXXVFITGTTDGLMSIQGRKHNAEDIKATVLAVDPVKHVHRGRIAVFSVSVLREDRIVIVVEQKSNCSEEKSFQWMSHVLPAIDTVHGVGVYCLCLVAPNGLPKTSDGRVCSNETKVRYLDGSLNLVNLLMCPHTTVTNLPKPRTKHQEPGPNAAIVGGLLKGQRMAEAQGRDVDGETAXXXXXXXXDVSRKHQYITEILKWRAATNPDQHLYTLLNNKNHVAGTLNSLQLHKKAEKFAQVAIEVGKLQSGDHVSLLYPPGLDLIAAVYGCFYVGLIPVPIRXXXXXXXXXXXXXVKMIVQVSKSAAVMTNSQLIKLLRTKEALHIIDAKTWPPMLNTDDLPRRKATFKYRTPPTPELLAYLDFSVSTTGMLAGVKMSHLAVTSLCRAQKLAAELYPSREVAICMDPYCGLGFVLWCLSSVYSGHHTILIPPVELEISPSLWLQAVSQYRVRDTVCSYPVMELCTKHLSRHINTLKLKQVNLASLRTCVVIAEERPRITLIQTFNALFCSLGLSPKAVSTSFGSRVNIAICMQEASHPEPITVYIDTRSLRHDRIQQVERGAPSSLCLMESGRILPGVRVVIANPETRGLCIDSQLGEIWVASQHNGSGYFNVSAGDHLTEEHFTAMLATTDKEGNKLQYARTGYLGFVKRTELTQTDGAPHDALFIVGALDEALLLRGLRYHPIDIEMSVIRGHKSIVECAVFNWTNLLVVVVELKGDERAALDLVPIVTTIVLEEHQXXXXXXXXXDPSVIPLNSRGEKQRMHLRDSFLTDQLDPIYVAY 2829
G P +E ++RTGLLGF+GPGGLVF+ G DGLM + GR+HNA+DI AT LAV+P+K V+RGRIAVFSV+VL ++RIVIV EQ+ + +EE SFQWMS VL AID++H VGVYCL LV N LPKT G + +ETK +L+GSL+ N+LMCPHT VTNLPKPR K E GP + +VG L+ G+R+A+A GRD+ D +RK +++E+L+WRA T PD LYTLLN + +A +L +QLHK+AEK A + +E G LQ GDHV+L+YPPG+DLIAA YGC Y G +P+ +RPP+P N+ TTLPTVKMIV+VS+SA +MT + KLLR++EA +D +TWP +L+TDDLP+++ + P P+ LAYLDFSVSTTGMLAGVKMSH A ++ CR+ KL ELYPSREVAIC+DPYCGLGFVLWCL SVYSGH +ILIPP ELE +P+LWL AVSQY+VRDT CSY VMELCTK L +LK + ++L+ +RTCVV+AEERPRI L Q+F+ LF LGL P+AVSTSFG RVN+AIC+Q S P+P TVY+D R+LRHDR++ VERG+P SL LMESG+ILPGVR++IANPET+G DS LGEIWV S HN SGYF + + L +HF + L+ D + +ARTGYLGF++RTELT +G HDAL++VGALDEA+ LRG+RYHPIDIE SVIR HKS+ ECAVF WTNLLVVVVEL G E+ ALDLVP+VT +VLEEH ++VGVVVVVD VIP+NSRGEKQRMHLRD FL DQLDPIYVAY
Sbjct: 764 GAPISEYPFIRTGLLGFVGPGGLVFVVGKMDGLMVVSGRRHNADDIVATALAVEPMKFVYRGRIAVFSVTVLHDERIVIVAEQRPDSTEEDSFQWMSRVLQAIDSIHQVGVYCLALVPANTLPKTPLGGIHLSETKQLFLEGSLHPCNVLMCPHTCVTNLPKPRQKQPEIGPASVMVGNLVSGKRIAQASGRDLG-------QIEDNDQARKFLFLSEVLQWRAQTTPDHILYTLLNCRGAIANSLTCVQLHKRAEKIAVMLMERGHLQDGDHVALVYPPGIDLIAAFYGCLYAGCVPITVRPPHPQNIATTLPTVKMIVEVSRSACLMTTQLICKLLRSREAAAAVDVRTWPLILDTDDLPKKRPA-QICKPCNPDTLAYLDFSVSTTGMLAGVKMSHAATSAFCRSIKLQCELYPSREVAICLDPYCGLGFVLWCLCSVYSGHQSILIPPSELETNPALWLLAVSQYKVRDTFCSYSVMELCTKGLGSQTESLKARGLDLSRVRTCVVVAEERPRIALTQSFSKLFKDLGLHPRAVSTSFGCRVNLAICLQGTSGPDPTTVYVDMRALRHDRVRLVERGSPHSLPLMESGKILPGVRIIIANPETKGPLGDSHLGEIWVHSAHNASGYFTIYGDESLQSDHFNSRLSFGD---TQTIWARTGYLGFLRRTELTDANGERHDALYVVGALDEAMELRGMRYHPIDIETSVIRAHKSVTECAVFTWTNLLVVVVELDGSEQEALDLVPLVTNVVLEEHYLIVGVVVVVDIGVIPINSRGEKQRMHLRDGFLADQLDPIYVAY 1554 HSP 2 Score: 98.9821 bits (245), Expect = 1.230e-20 Identity = 124/558 (22.22%), Postives = 224/558 (40.14%), Query Frame = 1
Query: 1225 LQSGDHVSLLYPPG--LDLIAAVYGCFYVGLIPVPIRXXXXXXXXXXXXXVKMIVQVSKSAAVMTNSQLIKLLRTKEALHIIDAKTWPPML----NTDDLPRRKATFKYRTPPTPELLAYLDFSVSTTGMLAGVKMSHLAVTSLCRAQKLAAELYPSREVAICMDPYCGLGFVLWCLSSVYSGHHTILIPPVELEISPSLWLQAVSQYRVRDTVCSYPVMELCTKHLSRH---INTLKLKQVNLASLRTCVVIAEERP-RITLIQTFNALFCSLGLSPKAVSTSFGSRVNIAICMQ---EASHPEPITVYIDTRSLRHDRIQQVERGAPSSLCLMESGRILPGVRVVIANPE-TRGLCIDSQLGEIWVASQHNGSGYFNVSAGDHLTEEHFTAMLATTDKEGNKLQYARTGYLGFVKRTELTQTDGAPHDALFIVGALDEALLLRGLRYHPIDIEMS---------VIRGHKSIVECAVFNWTNLLVVVVELKGD--ERAALDLVPIVTTIVLEEHQXXXXXXXXXDPSVIPLNSRGEKQRMHLRDSFLTDQLDPIYV 2823
++ GD V+L++P +AA YGC ++PVPI P + + ++ +T+ K L I K WP +L + L + + AY+++ G + GV ++ A+ + C+A A + + +D +G L+SV + H I IP ++++P W+Q V QY+ + C K H + + +NL+SLR +V P I+ F +F S GL + + S + + ++ + S+ P + L + I+ S L + + G ++PG + P+ LC ++GE+ V + G+ Y+ +S T E F + ++ ++ + RTG LGFV P +F+VG +D +++ G R++ DI + V RG ++ V + +V+V E + D E + + V + HQV V + +V + +P G + FL L P V
Sbjct: 378 VRPGDRVALVFPNNDPAAFMAAFYGCLLAEVVPVPIEVPLTRKDAGSQQ-IGFLLGSCGVTVALTSDACHKGLPKSPTGEIPQFKGWPKLLWFVTESKHLSKPPRDWFPHIKDANNDTAYIEYKTCKDGSVLGVTVTRTALLTHCQALTQACGYTEAETIVNVLDFKKDVGLWHGILTSVMNMMHVISIPYSLMKVNPLSWIQKVCQYKAKVA---------CVKSRDMHWALVAHRDQRDINLSSLRMLIVADGANPWSISSCDAFLNVFQSKGLRQEVICPCASSPEALTVAIRRPTDDSNQPPGRGVLSMHGLTYGVIRVDSEEKLSVLTVQDVGLVMPGAIMCSVKPDGVPQLCRTDEIGELCVCAVATGTSYYGLSGMTKNTFEVFP--MTSSGAPISEYPFIRTGLLGFV----------GPGGLVFVVGKMDGLMVVSGRRHNADDIVATALAVEPMKFVYRGRIAVFSVTVLH-DERIVIVAEQRPDSTEEDSFQWMSRVLQAIDSIHQVGVYCLALVPANTLPKTPLGGIHLSETKQLFLEGSLHPCNV 912 The following BLAST results are available for this feature:
BLAST of TCONS_00025882 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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