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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00025872 ID=TCONS_00025872|Name=TCONS_00025872|organism=Clytia hemisphaerica|type=transcript|length=3881bpRun BLAST on NCBI transcript from alignment at sc0000550:188434..207887+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00025872 ID=TCONS_00025872|Name=TCONS_00025872|organism=Clytia hemisphaerica|type=transcript|length=19454bp|location=Sequence derived from alignment at sc0000550:188434..207887+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00025872 vs. Swiss-Prot (Human)
Match: MINT (Msx2-interacting protein OS=Homo sapiens GN=SPEN PE=1 SV=1) HSP 1 Score: 132.494 bits (332), Expect = 9.190e-31 Identity = 71/173 (41.04%), Postives = 109/173 (63.01%), Query Frame = 3
Query: 942 VTVKNILTREPDTVLEESLYHEFKKYGEIVNIIIKVNSNQRYAYVQY-AQSDQAQDATRSTGKLFMGQELKV-AVKGSRNGAADTATGFD-------ANATRTVFVGQLDKSVTHGELREIFERFGEVVDVDIKKMHTGITTYSFVQYIDIQSAIVARQKMDRQLIRNNRIKV 1433
+ V+N+ R DT L++ L+HEFKK+G++ ++ I S +RY V + Q DQ + T S GKLF G +++V A G + + D ATRT+F+G L+K+ T+ +LR IF+RFGE+VD+DIKK++ G+ Y+F+QY DI S A +KMD + + NNR+K+
Sbjct: 337 IKVQNLPVRSTDTSLKDGLFHEFKKFGKVTSVQIHGTSEERYGLVFFRQQEDQEKALTASKGKLFFGMQIEVTAWIGPETESENEFRPLDERIDEFHPKATRTLFIGNLEKTTTYHDLRNIFQRFGEIVDIDIKKVN-GVPQYAFLQYCDIASVCKAIKKMDGEYLGNNRLKL 508 HSP 2 Score: 118.627 bits (296), Expect = 1.621e-26 Identity = 53/82 (64.63%), Postives = 67/82 (81.71%), Query Frame = 3
Query: 426 MPRESRHVWVGNLPEKVQESEVAEYFARYGRVEKIKLLPKISPDGGRAAFVDFVDIRSATKANEAQNSIGGRDLRTNYNEPG 671
M RE+RH+WVGNLPE V+E ++ E+F RYGRVE +K+LPK +GG AAFVDFVDI+SA KA+ + N +G RDLRT+YNEPG
Sbjct: 1 MVRETRHLWVGNLPENVREEKIIEHFKRYGRVESVKILPKRGSEGGVAAFVDFVDIKSAQKAHNSVNKMGDRDLRTDYNEPG 82 HSP 3 Score: 95.9005 bits (237), Expect = 1.167e-19 Identity = 44/79 (55.70%), Postives = 62/79 (78.48%), Query Frame = 1
Query: 2917 LMDLLRRFPVMWQGLLGLKNETAAVQMHFLSGNLQLVDQSLPRSAQPNEVPPPLRISQRMKLEPSQLEGVDKRIQVQYN 3153
++ LL+++P++WQGLL LKN+TAAVQ+HF+SGN L +SLP S E PPLRI+QRM+LE +QLEGV +R+ V+ +
Sbjct: 3498 MVQLLKKYPIVWQGLLALKNDTAAVQLHFVSGNNVLAHRSLPLS----EGGPPLRIAQRMRLEATQLEGVARRMTVETD 3572 HSP 4 Score: 90.1225 bits (222), Expect = 6.901e-18 Identity = 39/118 (33.05%), Postives = 67/118 (56.78%), Query Frame = 1
Query: 1423 VSRYLWLFAXMDRQLIRNNRIKVGFGRGTPTNSLWIGNLAAKTTENDLMKYFASFGHVQQCLIDRKVWQALLRYRTIESCTKAFAEMHGKHVNGSKIVVDYASPACRESYYNRMEKHG 1776
++ MD + + NNR+K+GFG+ PTN +W+ L++ ++ L ++F +G V + + DR AL+ Y IE A E G+ + G+KI VD+A+ + ++Y+ MEK G
Sbjct: 486 IASVCKAIKKMDGEYLGNNRLKLGFGKSMPTNCVWLDGLSSNVSDQYLTRHFCRYGPVVKVVFDRLKGMALVLYNEIEYAQAAVKETKGRKIGGNKIKVDFANRESQLAFYHCMEKSG 603 The following BLAST results are available for this feature:
BLAST of TCONS_00025872 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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