TCONS_00025866 (transcript) - C. hemisphaerica

Overview
NameTCONS_00025866
Unique NameTCONS_00025866
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length688

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00025866 ID=TCONS_00025866|Name=TCONS_00025866|organism=Clytia hemisphaerica|type=transcript|length=688bp
ATCAAGTCTTTTGgcctttcaaatctttttgtaCTCTCTAAAATCAACAT
ATTTTTATTCCAATAGATCCACTTACAACTAATAAAAAACAGTCAATATT
AAACTAAATGAGTAGCAATATATTATCAGATTTGAAACTTCCCGAGCCAG
ACGTTCGATTGGTAGTTTACAATCAAACCATAGTCAAAGTCAAGTTGAGA
TGCCGTAATGCTCAAATCACTGGTGAAACGAACCATGAAAGCATGAAATT
CTGGAAGAAAAACAAGACTCAAAACGACATAAagCGGGCCATGAAGTACA
TATTAAGTGGATCGAACAAGATTGAACCCATACGGACAGATGAACTTGTC
ATTTATCCATACAAGCGTGAATGGCCGAACGCATCTAAATTTGAATTCAC
TCGTGAGGGAGACACCTTAAACTGTTCACAAGATCTATATATGTTTTACA
TTGAACGTATTGAAGATAAACAAACACCAACAACACCAGTCACCATGAGA
GCTCAAACGCGTGAAGAACAAATTGTATTGGTCGTGGATGAAAAGACACC
TGTTAATTCGTTCGTTACGAGGTAGAGCGTTGACTGATTCGCTGAAAAAG
AAACGAAGAAGAATCAATTCTATTCATGAAGAATCGTCTCAAAGCTCAAC
TGACGAAAAGATTGACTCAAGTGACGAAGAGAGAGGTA
Run BLAST on NCBI

transcript from alignment at sc0000550:122279..128180+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00025866 ID=TCONS_00025866|Name=TCONS_00025866|organism=Clytia hemisphaerica|type=transcript|length=5902bp|location=Sequence derived from alignment at sc0000550:122279..128180+ (Clytia hemisphaerica)
ATCAAGTCTTTTGgcctttcaaatctttttgtaCTCTCTAAAATCAACAT
ATTTTTATTCCAATAGATCCACTTACAACTAATAAAAAACAGTCAATATT
AAACTAAATGAGTAGCAATATATTATCAGATTTGAAACTTCCCGAGCCAG
ACGTTCGATTGGTAGTTTACAATCAAACCATAGTCAAAGTCAAGTTGAGA
TGCCGTAATGCTCAAATCACTGGTGAAACGAACCATGAAAGGTACTTata
tattttgaagattttggttTGACTTAATTTCACGAATTATTCATTATTGG
TGAGCTTTTATGTGAAACTGTGTTGATGGTTTTGGATATTTGCATTATTA
ATGctttttctcttgacacttCTTCATATGACCTTGCCAAAATGGCTTTG
GAAGAAAAACACCCCCTTGAGACGGAGAAGTTTTATCGTTTTTATAGAAG
TTTTATGAAATTGCATtttggaattaatttttgtaCATATAACAACATCG
ACTACCCTCCAGTCCtttgttttaaagatttttctttccattttaCAGCA
TGAAATTCTGGAAGAAAAACAAGACTCAAAACGACATAAaggtatcgaat
agtagagtccattcgctttaagtgtgcactgaACCTTTGTTTGGCTTGTC
ATTTGATAATAAATGTTTCAACTTTAACATATGATATATCGTTGAAAAGA
TGATTCAGAGCACtataatttctgaaaaaataattcaaaaattttagtaa
atgaagatgaaaaatgaagatgaaaaatgaagatgaaaaaagtgaatttt
taattttatattcttAATGCACAAAGCTGCGGATTAGCAATGCAAAACAT
GATCGAGTCCGACCTTTAAATAAATTTAGTTTCGGCCTAAAATAatggaa
atcgtcgtttttcaGACTTTCATTGCATTTTATCGTtagatttctttatt
ttttctcaCAGAAACGTTATTGATAGCAATACACACAATCAAGCAtgatt
taattgtcaataaaactgatttttgcatcCCTCGAGCTgtagttgatatt
ttttcatgaaatttcgcacactgatgcaaaattaggctgcgcgcatcccc
agaatttattttgttatagggaatgcgtatcgtgtatgaaattctcgtcc
gagagttacctaaaatttggggtaaccaaaatttgcatgaatttaaaaaa
ttaaaaaaagagctTCGTTagatttaaagtttttaaaatttctgcTACTC
GCAAAAAAAGGTTCCCTAAGGgtaaaatatctgaaaaagGGCAGAGCACG
TTAATTTGACAACTTCGGACACTACTGTTAGCTTGGTTTGGAGTTAAATA
CTGGATAAAATGCGTCAAGGGCGGTTATATTGAACGATATTTCTTATTTT
AGCGGGCCATGAAGTACATATTAAGTGGATCGAACAAGATTGAACCCATA
CGGACAGATGAACTTGTCATTTATCCATGTATCTTTTTCATTACGTTATT
TTCATCATcaatttcgaaatttatttgttttgatgtaccAAAATTTATAA
ACTAGTATTCGCTGGCCTGAATGTATATAGTCTTGTGAATTTGAGTTTGG
GTGGTAGGATATCTTGTAAGAATTTCCTTGACCTAAATCCCAAAAAAAAT
CAGACAAGCGTGAATGGCCGAACGCATCTAAATTTGAATTCACTCGTGAG
GGAGACACCTTAAACTGTTCACAAGATCTATATATGTTTTACATTGAACG
TATTGAAGATAAACAAACACCAACAACACCAGTCACCATGAGAGCTCAAA
CGCGTGAAGAACAAATTGTATTGGTCGTGGATGAAAAGACACCTGTTAAT
TGTAAGTTTTCACTCTCTTATTGGTTTATCAAGGAATATAAACCAATTTC
GTTATTTTCGACCTTGGATTGCCTTTCCTCATAATTGTTCATAGTTTTCT
AGATTTCTTCGTACTCTACTACAGTGGCGGATCTAAGGCCTTTCAAAATT
TATGGCGGAGAGCGTTTATATGTGAACCATAATCCTTATGAGGATATTTC
TCCGTCAGAAATTTTGAACCTTCTTTAGATGTTTCAGATCCGCAAATGCT
TTATCTAATTTTTTAACATTCTTACGATTAAGTGTAATTATATTCTCGTG
GTTTTCATGGGCTTTGGTAAGTTTTTAAACATATTGAGTTATCCAAATGA
TCAATTTCAGTGTTAAGTTAGCTtgtgtttattgattttcagcACCAGCT
CAGAGAAGTATAGTTAGCACACGAAATTCAGGAAAGGTATAGCAACAGAA
TATTCAATTTATAATTTTGCAGGATTGTTATCAGTTTGTCGATGGAAAGG
TTCCTTTAATAAACTTTTAGTAATATCGGGTGACTCATAAAACTTTGGAT
TTCTGACGAACTTTTGAGAACAAACAAAGTTATACTTGCTTTTTTCTAGT
TAAAGTTATTTTGAGatcaaattatttctttttgtcCCAGGAAGTCGCCT
AACGCCCTAAGTTATTTGAGTCAGTCGGTATAGTTTTTGTTTCCAGAAAC
CTTAGTAAAGGTATTGGTATTAAACCAATACTTTTACGTTCAGCCACTCT
ATTTGCAGTTCTGTATCCATTTAAATATCCCCACAGTAACAGACAGAGTA
TTTTTCATTAGTTTAGAGTGTCCGAGATAGACCATATTATTGAAAGTTCT
CTTTATCGTTTTCCTTGTGCTTCTGAATGCTGCTCTTGGcttcaattttg
tcatttttttgtgtccaataagttttgtttttttgggctTTGGAATTTTT
CCTGTGACATAACAATTTTACTGATGTAACTCGCTTTCTCTAAAGAAAGG
TTTTTCAAAATACTCTTCTTTGTGATAAAAAAAACTGGACTAGAAAATCG
AGGAAATTAGCGAAAACGTCATCTTTTAATGGTTCAACTCCAATCTATTA
GCCATACGAACCGTTCGTAATGATGGTTGTGTTCTATCTACAGTacactc
tcgcttattcgaacttctattattccaatcactctataattcgaacttgt
tcccagtccccgtcaaggagaaaccctcttaaaatactttctataattcg
aatctctttgtaattcgaacaaataacaTTCCCCGCTTAAGTTCGAATTA
ACGATAGTCTActttaataaactttttttctattgtagcaggttcatgta
aaaaagtcacgaaaaaacgtcgagcAAAGCCCTGACTAGCTGAATATTGC
ACACATAAGCGTTTTTTTCTGTCCAGAATATGAGTTAATCTTATCGTAtg
tctcagccaatcagagctttactcgacgttttttatATGAATCTGGTAAA
AGGAAATTTGTGTATTCCTATTTCTTTACATAGCGTTCGTTACGAGGTAG
AGCGTTGACTGATTCGCTGAAAAAGAAACGAAGAAGAATCAATTCTATTC
ATGAAGAATCGTCTCAAAGCTCAACTGTAAGACTATTTTCTTGAGCTGTT
CTGAAAACCCTTTTTTCCCAACATANNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTCA
GAGTTACATCAATTTTGTAAATGAAGTATTTTGTGGAgcatgtaaaaata
ttttattttaatcagCTTTTGGAAAAGTCCCAAGGCCAAGAGAGTTAAAA
GTGAGAATATGTCGAGTCTAtgtgaagaaaatgaaaattgaaataagaaG
GGAACCTTCTGTGTTCTGGAGGTGGAGTATGCACAATATTTGCATATTTA
TTTGGTTgactggaaaaaaataaaacagatttttcataaagtaaaatcct
aagagtcattttgaaatttttggaaacaAATCACCCCCATGTCACTTtaa
aatgacccccccccccccctctttNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNcccccccccccccccacctctACAA
TTGAGCACACAAGAGTATAACAAATCGTGATAGAATATATGAGGTTTTTT
TATTTGCATTtaactctctataattcgaacttttgtaattcgaatctttc
tctaatttgaactAAAACTTTGGTCCCTTCAGCTGAAAATTAGTTTAAAA
TGTTCTctaaaattcgaatctttctctgatTCGAAGAAAGGTTTTGCAAC
TGTAAATTCGTTCTGCTCCGCTTTTTTTTCTGGACGCACTGTATTTGGCT
TTGATCTGTATATGACTACtaaactttaaataaaaatacagCTTGATTAT
CTTCATAGCTCAGACGTCCCTAACGGactgttcgagttatggagattcta
TCCATAATGTCCATCAATTTATATTATTTACCAAAAAGATTGTTCTGCTT
GTTTACATATTTTAGGACGAAAAGATTGACTCAAGTGACGAAGAGAGAGG
TA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_014546XLOC_014546Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00025866-exon-sc0000550-1491911889:122279..122519TCONS_00025866-exon-sc0000550-1491911889:122279..122519Clytia hemisphaericaexon
TCONS_00025866-exon-sc0000550-1510915933:122279..122519TCONS_00025866-exon-sc0000550-1510915933:122279..122519Clytia hemisphaericaexon
TCONS_00025866-exon-sc0000550-1575043694:122279..122519TCONS_00025866-exon-sc0000550-1575043694:122279..122519Clytia hemisphaericaexon
TCONS_00025866-exon-sc0000550-1491911889:122827..122869TCONS_00025866-exon-sc0000550-1491911889:122827..122869Clytia hemisphaericaexon
TCONS_00025866-exon-sc0000550-1510915933:122827..122869TCONS_00025866-exon-sc0000550-1510915933:122827..122869Clytia hemisphaericaexon
TCONS_00025866-exon-sc0000550-1575043694:122827..122869TCONS_00025866-exon-sc0000550-1575043694:122827..122869Clytia hemisphaericaexon
TCONS_00025866-exon-sc0000550-1491911889:123681..123756TCONS_00025866-exon-sc0000550-1491911889:123681..123756Clytia hemisphaericaexon
TCONS_00025866-exon-sc0000550-1510915933:123681..123756TCONS_00025866-exon-sc0000550-1510915933:123681..123756Clytia hemisphaericaexon
TCONS_00025866-exon-sc0000550-1575043694:123681..123756TCONS_00025866-exon-sc0000550-1575043694:123681..123756Clytia hemisphaericaexon
TCONS_00025866-exon-sc0000550-1491911889:123932..124129TCONS_00025866-exon-sc0000550-1491911889:123932..124129Clytia hemisphaericaexon
TCONS_00025866-exon-sc0000550-1510915933:123932..124129TCONS_00025866-exon-sc0000550-1510915933:123932..124129Clytia hemisphaericaexon
TCONS_00025866-exon-sc0000550-1575043694:123932..124129TCONS_00025866-exon-sc0000550-1575043694:123932..124129Clytia hemisphaericaexon
TCONS_00025866-exon-sc0000550-1491911889:125662..125754TCONS_00025866-exon-sc0000550-1491911889:125662..125754Clytia hemisphaericaexon
TCONS_00025866-exon-sc0000550-1510915933:125662..125754TCONS_00025866-exon-sc0000550-1510915933:125662..125754Clytia hemisphaericaexon
TCONS_00025866-exon-sc0000550-1575043694:125662..125754TCONS_00025866-exon-sc0000550-1575043694:125662..125754Clytia hemisphaericaexon
TCONS_00025866-exon-sc0000550-1491911889:128144..128180TCONS_00025866-exon-sc0000550-1491911889:128144..128180Clytia hemisphaericaexon
TCONS_00025866-exon-sc0000550-1510915933:128144..128180TCONS_00025866-exon-sc0000550-1510915933:128144..128180Clytia hemisphaericaexon
TCONS_00025866-exon-sc0000550-1575043694:128144..128180TCONS_00025866-exon-sc0000550-1575043694:128144..128180Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000550supercontigsc0000550:122279..128180 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
39.1566	41.0384	28.5344	25.0367	1.65546	1.67415	2.8374	3.74663	2.58636	0.317433	1.03925	2.63361	2.59606	0.67425	3.32252	2.86749	5.84482	4.64587	2.1716	0.686735	0.834652	2.6495	17.0227	21.2099	12.324	11.3872	3.60469	4.18107	7.7482	11.5984
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00025866 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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