TCONS_00025864 (transcript) - C. hemisphaerica

Overview
NameTCONS_00025864
Unique NameTCONS_00025864
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3056

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00025864 ID=TCONS_00025864|Name=TCONS_00025864|organism=Clytia hemisphaerica|type=transcript|length=3056bp
tttgttttgatctgaaatcttcagtaggggtggccaacatggttccttTG
CTCATATCAGAGGGGctcgagacgggggtaagagaattaaagtttctaag
taaaatcttaattatcacccaaaaaagtgcctttttttgtccatatcttt
taaatagacaGTCCCACCCTTATCcctccttcagaaaaaccaaaaatatt
ggccttaattgcttgatttcagttcctgtagccaatagtgtgaccccctg
tatttctattttattcagCGCGgttttttcaatagagatgtcacatgact
caaatcccgcagtcttattggactagagaaagcaaaagtgaaatcgcgtg
atctgattggatgaaaaaaagaccGGGGAACTGGAACCGAATGGAATTCT
ctggaattctcattctaaaacaagatggcggcaagaaaagcacgtctttt
gcttcgGATGAAaagttgtaaattctggttgattttaaggttttatctta
tcttatctcatttaatttaattagtagaggcttctgcaatgtttggggaa
ggtaagtctttttgtttttcggtggaaataaagtgtttaaaaaagcattt
tttgtgctgaaggtttatttttctttgcatttcagtatttcactgatggt
tatgattttttcacagaacatagtaaaactattcaggaacttggatcttt
ttacagaattccaaaaaatctgttagttctggagataaaTTGAAAAGTat
agacatgggtagttcgcgttcgtgtttcgcgttcccaaaccaaacgcacg
tggtaTGCGatatcactttcttaacaacccttcgaAGACTCAAGGCGGCA
ATCAAAAAATGGCCCAATAGTTCCATTCGGGTCATCTGACCGactgttta
tttacaagaaaacccAATTCGGAAAGTTGGTAAAGTCGTCTGGTTTTCAC
TTTGGTGAGATTTTCAGAcaaaatatgacggtctcaggcaaaaatcatag
ggtcaaaatgaaaattctagagacctgttgtatatttttggaaagctctc
aaaaattaagataagagatatattgcgagtataggtgatttcagtaccta
acttgATATATAAGGCTTCAAAAAGCGCATAAACTGGTCGAAACAGTTGT
TTCtgactgaaaaacactgtttttaagagTTTAATACCTCGAGTTAggta
aaaacttaaaaaaacgaacaaatttccccctactatctAAGATTTTCCTT
AATTTGCTCTTAAAAGACTAATACCAAAATTGAGCCTTGTGGTTTGATAA
AACTGTTCTCAGAAAAAGCAGCCACCGAGTGTGTAAAAACCGTGTAACAA
CAGGCAGTATCCATAAAGAGTGTGGCTAAAATATTAATAGATTTTGCACT
AACCCTAAAGTAGattgtttcttttttcagattgaAAATATTCAGAGCAA
GCCTTCGACATCAATTTCATTAAAGATGGCTTTTAAAGTTTTCCAACAGA
TTCGTTCAATCACAATTATAAGAAATCAAAGTCACTCAATTTCAAATCTA
TTTAACAATTTCTTCCGACATACACATTCACACAACAGCCATTTCCTAAA
TTCAAAAAGTGGGGAATCTTCGAAATTATTGACGATAACAAAAAGAGCTC
TATCTGCTGAAGCAAAGAAGAAGAAACCCACCAACCGTGGACCAATTGGT
TGGGCTTCTCTAGCAGTGTTTATGTTAACAGGGGGTGGTATAGTTGCTTA
TGTCCGATATGAAAAAGAGGAGAAACGCAAAGCCAAGGAGAAGGAGATGA
GAAAATCAGTTGGGATGGCTGCCATCGGTGGTCCTTTTGAACTAGTTGAT
ACGAATGGAAAAACTGTCACTGATAAAGACTTCTTTGGGAAATGGCTTCT
TTTATATTTTGGATTCTGTCATTGCCCAGATATATGTCCTGACCAATTGG
AAAAGTTATCTACTGTTGTGGAAAAAATAGATGCCATACCAAATCTACCG
AACGTACAACCTGTCTTTATCACTGTTGACCCACATCGAGATACTGTGGC
TGCTGTCAAAGAATACATTCAAGattttcatCCACGAATGGTTGGATTGA
GCGGCACGGAAGAACAAGTGAAGAAGGCCTGTAAAGCGTATCGTGTATAT
TATTCAGCTGGTCCtaaagatgaagatgaagactATATCGTTGATCATAC
AATCATTACTTATCTTATTGGACCGGACGGAAAattcatcgaatatttcg
gACAGAATCGTGAAATTAATGAAATTGTAGGTTCCATAAGCACTAGAATG
GCTTTGTCTAAGAAAAAATCGTCTTGAGTTGAATAACACATGGAATATTT
ACTTGTCTGGAGAACGATTCTATGCTCAAATGTTGCAATTTTGGTACAAG
AGGTATgcggtcaattttttttggcagAGAAAGTAAAAGGCATCAGTGAT
ATTTAGAGACTTCGTCAAACACTTAAAAGGTCTGGAGTTTTTCGAAAAGG
CGATACCAGCAATACAaggaaattgtcattttgatcATTTGATCGAAATG
AATGCTGAAGGTGTTTACCGATTAACGGAATTGAGTCGTTGATCTTGAAG
TGAATTTCATACTTTGTCAataattgtgaaattttttaatgatattatgc
aaaatgtaaaatatttgtttgccgcttaaaattaattatattattaattt
tcggaaaattttttagaaaattaaaaaaaaaagtaatctAGCATACTGTA
AATTGATTTCTTACCGCCTCATTGAAATtaaacttcaaaatttcaaaaaa
catcgTCATCAGTtaaatgtcagaaatattttttggtgTGACTTTTGATA
GCTTTTAACGTTTTAATctgtttaaaaaacaatttgagtTATACTGTAAT
TCTACTTTGTTTGGCCCATGAAAAGAATCAACACTAAGGGGCcggctttt
tgatgatttttgatgcgcttaattttgaaagctttttcttgaaactttgt
gttacgtatatattttttttagaaattgagAGAACTGAAAtaacacaaaa
tcaaaa
Run BLAST on NCBI

protein sequence of TCONS_00025864-protein

>TCONS_00025864-protein ID=TCONS_00025864-protein|Name=TCONS_00025864-protein|organism=Clytia hemisphaerica|type=polypeptide|length=283bp
MAFKVFQQIRSITIIRNQSHSISNLFNNFFRHTHSHNSHFLNSKSGESSK
LLTITKRALSAEAKKKKPTNRGPIGWASLAVFMLTGGGIVAYVRYEKEEK
RKAKEKEMRKSVGMAAIGGPFELVDTNGKTVTDKDFFGKWLLLYFGFCHC
PDICPDQLEKLSTVVEKIDAIPNLPNVQPVFITVDPHRDTVAAVKEYIQD
FHPRMVGLSGTEEQVKKACKAYRVYYSAGPKDEDEDYIVDHTIITYLIGP
DGKFIEYFGQNREINEIVGSISTRMALSKKKSS
Run BLAST on NCBI

transcript from alignment at sc0000550:60182..66980+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00025864 ID=TCONS_00025864|Name=TCONS_00025864|organism=Clytia hemisphaerica|type=transcript|length=6799bp|location=Sequence derived from alignment at sc0000550:60182..66980+ (Clytia hemisphaerica)
tttgttttgatctgaaatcttcagtaggggtggccaacatggttccttTG
CTCATATCAGAGGGGctcgagacgggggtaagagaattaaagtttctaag
taaaatcttaattatcacccaaaaaagtgcctttttttgtccatatcttt
taaatagacaGTCCCACCCTTATCcctccttcagaaaaaccaaaaatatt
ggccttaattgcttgatttcagttcctgtagccaatagtgtgaccccctg
tatttctattttattcagCGCGgttttttcaatagagatgtcacatgact
caaatcccgcagtcttattggactagagaaagcaaaagtgaaatcgcgtg
atctgattggatgaaaaaaagaccGGGGAACTGGAACCGAATGGAATTCT
ctggaattctcattctaaaacaagatggcggcaagaaaagcacgtctttt
gcttcgGATGAAaagttgtaaattctggttgattttaaggttttatctta
tcttatctcatttaatttaattagtagaggcttctgcaatgtttggggaa
ggtaagtctttttgtttttcggtggaaataaagtgtttaaaaaagcattt
tttgtgctgaaggtttatttttctttgcatttcagtatttcactgatggt
tatgattttttcacagaacatagtaaaactattcaggaacttggatcttt
ttacagaattccaaaaaatctgttagttctggagataaaTTGAAAAGTat
agacatgggtagttcgcgttcgtgtttcgcgttcccaaaccaaacgcacg
tggtaTGCGatatcactttcttaacaacccttcgaAGACTCAAGGCGGCA
ATCAAAAAATGGCCCAATAGTTCCATTCGGGTCATCTGACCGactgttta
tttacaagaaaacccAATTCGGAAAGTTGGTAAAGTCGTCTGGTTTTCAC
TTTGGTGAGATTTTCAGAcaaaatatgacggtctcaggcaaaaatcatag
ggtcaaaatgaaaattctagagacctgttgtatatttttggaaagctctc
aaaaattaagataagagatatattgcgagtataggtgatttcagtaccta
acttgATATATAAGGCTTCAAAAAGCGCATAAACTGGTCGAAACAGTTGT
TTCtgactgaaaaacactgtttttaagagTTTAATACCTCGAGTTAggta
aaaacttaaaaaaacgaacaaatttccccctactatctAAGATTTTCCTT
AATTTGCTCTTAAAAGACTAATACCAAAATTGAGCCTTGTGGTTTGATAA
AACTGTTCTCAGAAAAAGCAGCCACCGAGTGTGTAAAAACCGTGTAACAA
CAGGCAGTATCCATAAAGAGTGTGGCTAAAATATTAATAGATTTTGCACT
AACCCTAAAGTAGattgtttcttttttcagattgaAAATATTCAGAGCAA
GCCTTCGACATCAATTTCATTAAAGATGGCTTTTAAAGTTTTCCAACAGA
TTCGTTCAATCACAATTATAAGAAATCAAAGTCACTCAATTTCAAATGTA
AGTACAGTAAATTCGTTTTGATGTTGTTCAATTCAGTAAGTATATGGCCC
TTAAAATATCCCTCTGGAGATCTCAGTTacaaatattttgtcaaatattt
tgCTTTAGTTACAAATATTTTGTTAAAGTTTTTGCAATGTTGGAAACTTC
ATTGAATCTATTTTTAGTCCCATAAATCTCttcttaaaaactttattgaT
ATTTGTAATCGATTTCAATTTCGGTCACAACTTTTTAATTGGCTCCTAAA
ATGtagctttgaaattttggcgattTTTCCGGATGAAGTACTTTTAATAT
TAAGAAATGATTCCTGTATCTTAAATGTgtccttaattttttttcttcat
aaatatCTCAGGGTAAAAACTAAATAAtgatagccgcattctttttatCC
GTTCAACACATTATTATTTCAGCTATTTAACAATTTCTTCCGACATACAC
ATTCACACAACAGCCATTTCCTAAATTCAAAAAGTGGGGAATCTTCGAAA
TTATTGACGATAACAAAAAGAGCTCTATCTGCTGAAGCAAAGAAGAAGAA
ACCCACCAACCGTGGACCAATTGGTTGGGCTTCTCTAGCAGTGTTTATGT
TAACAGGGGGTGGTATAGTTGCTTATGTCCGATATGAAAAAGAGGAGAAA
CGCAAAGGTTAGTTGAAGTTGAAATCCTATTTTtgtaatgttgaaaattt
agaACAAATCGCGCATAAATTTTAATTTACTAGTAAGGTAAAACTCTCCG
TAGCTCAAAGCTCTTTGATTGGAATTTCTCCTTAAGTGAAACATCATAGG
GGCTGGGAGAGATCCATAATTTGATGGTTTGAAATATAAACTTTCTCCTA
AATTTTGAGGTTGTCCTTTAATGATAGAGTTTGTTTTAGTAGATTTGCAG
GTAGTATTTCACGTCTTATTCAATACCATATTAGAGAAGTGGTTTGGtgc
ttcttttgtttaaaaatgatgTGTAAGCAAATTTTAGAAGGTACGTTAAA
TGATGTCCTTTATTAAAGTAGTCAAATAAACAACACATGTCTAAATCAAT
ATTTCAGCTTCATGACCTTTTTCAAAGGTGAATAGTAGATAGTACCTGAA
GGTATCACGTATGTATTTTTTACAATGTCATTCTCTTATCGTTTTAGCCA
AGGAGAAGGAGATGAGAAAATCAGTTGGGATGGCTGCCATCGGTGGTCCT
TTTGAACTAGTTGATACGAATGGAAAAACTGTCACTGATAAAGACTTCTT
TGGGAAATGGCTTCTTTTATATTTTGGATTCTGTCATTGCCCAGATATAT
GTCCTGACCAATTGGAAAAGTTATCTACTGTTGTGGAAAAAATAGGTACA
ACGTTATCATCTATTAAGAAGGCACTATTTTAttgatttaaattgaaaat
cttttgttattCTTAAATTATCATCCCATCCTTTTTAGTTATCTTTGTTG
CATTGTTATTTTCACGGATTTCTATAACTCCGATCTCGCTATAGCAGTGA
ACTTGTTGTCTTCTCATGCCTAAAAAAATGATATGCTTTGGTGCTGCAGA
TTTTTTTCTCCGTAGATGGTTGCAACCATCAATAATGCCTGTAATCGTCT
acagaaaaaagaattttggatTCCTTTCAGTTATTTTAGCCTTGGGTTCT
AACCCCTCTCTCTCTGacttttaagtttaaaaatcaatataaatgttttt
ttctcttttgtacTATTGTACCCCTTGTTATATAACCCACTTCTGTTAAA
GAAAACTAGTTTTAAAAAGTAAGCGTTTTAGATTAAAATCTGAGGCTCGT
TGCGAAAactatgaaaaatatttagcattATTCGTTTTGTCAATTTTAGA
TGCCATACCAAATCTACCGAACGTACAACCTGTCTTTATCACTGTTGACC
CACATCGAGATACTGTGGCTGCTGTCAAAGAATACATTCAAGGTAATAAA
TGTCCCACAAACTAAATTTATGTTATagttattgaaaataaatttagacG
ATTGCACTGGACAGACGTCAATCCTTCTTTCAGCTCTAGAATTGTACTGC
AAGAGCGTCATGAATTTATTTAATAAGACCGAGAATTCTCCCCTGAGAAG
CCCGGACATTCTACACTTCAATAACATTCAGTAAATCGTCTATATAAACG
AATAGTCGTTATACTGCGCGAAGAAAAAGCCGTTAAAACATCTAGTTTAG
TCTACCACTATGAACGGGTCTCAACCTTTTTCTTATCCCTTCGTAGTATA
GCATGTTAGCCAACTAAAGTGCATagtagaaaataagcaaaaaataatgg
aagGGGCAAATGGTAGTAACTTgatacaaactgatattatctcgtaacaa
ttatcgtatcATCACAAAAACAACCATGTTACTAGTGTGCCCCAAAAAGG
CGGACAAATTCTTATATAAAGTAAAACCCTTATGATTTTATGACTTGTTT
ACTTATATCTCCAGAACCTATTCAAtcatatttagaatttaatatttatt
gatggattatttcaatttttaaagccCAGCTTAAATACTGAGTTTTGAGG
ATTCGATTTATATGAAAATTTGTcccctttttttgggacacactatAAAT
GACTTCAGTCTAatctttttatagattttcatCCACGAATGGTTGGATTG
AGCGGCACGGAAGAACAAGTGAAGAAGGCCTGTAAAGCGTATCGTGTATA
TTATTCAGCTGGTCCtaaagatgaagatgaagactATATCGTAAGTTATT
GAAAAGGTTTTTGGGTGCAGTATTAGAATTTCCTCCGCCCAAGACGAATT
TCCGTCCCAGCGTAGTATATTAGCGAGTTAATGTATGTGTATTTTTcttg
actgactgaggacgatggTAATTCACCACTTTCATCGTCTTCGATTTTTC
GGGTTTTTCCTAATCGCTTCAATCATtccaccgtcctcaaaagtgcaaat
acaaaAACTCACTTCTATAGAGTGgattttccgtctcaaaattctgcata
attcactAAAATTTCAAGGACATGTGTTAATTCGCTGTGGAAAATGTTCC
TTCTCGAAAGACCTTGCTTTCACCACTGATTATACTCTAACGTGAATAGT
GAATATTGAACACATCAATCCCTTTTTAATTCTTGGGTATAAATATGTGT
AGCGCAGTCAATGGTAACGTGAAGGGTGTCTTTTCACCCAAAAAGCAAGG
TAAAGAGAGGACGcccttttttcacttttttttacttaCATTCCTCTCTT
TACTGgttgaaaatttcaagcaaagAGTTACCAAGTACCATTTTTAAGTC
CTCTTTCAAACTCTAATCTAATTATTTCCCCATTTTCTTTCATACACGGC
TTTTGCTGAGAAGTTAAAGATAACGCTTAAAAAGAATTTCCAAGGGAGTT
CTAAACAAGTACTTCTTTGTGGTCACGCTaagcgttttttttttctttct
aaagaATAATTTAAAATGTTGTAAAAAGTCTGGCGTGGGTTTCAGCAAAG
ATATGGGAACTTCAAATATAAGACTAATTGATTGGTTTAACAGACCTTGT
TTTTAACGTCTCTAAACGTGAGCCATTTCTAAGTTGTTTAAAATACCATA
TTGATTATAGAAATCTGCGTCAAAAATGTATCAGTTTAATTGTATTATCT
TCAAcgtcacaaaaaaaaaattctcacaaaTCTATTTGATTCGGAAGATA
AATTACTGTAACTCAAGGAACAGGCGTCTTTTGAGTATTAAAATCGAAGT
AATAACCAtgaaatttttagatatttcttCCGCCTTGCTACTCATTTAGG
CAAAGGGTATGGGCTACTGATTTGGACAGATTGTATCCAAAAGGCGTAAG
ATTTACAATGTCCAGGGGTTAGTGTGGATGCGATCTGTTTGATGCTTAAC
CAGTGTCGTCCAAGGGTTTacaaatcaaaataataaatttaagctctttt
tataagaatcgcaaagctcaaatttgaaaaaattttaagaaatttttaag
aatCATTTTCAGTTTTCCATTTTTATCTATGATATGAATCAGACATGTAA
ACCAACTATGCGGGCTTTTTGAGATttggaattttttgtttttgtttcct
aCTTCTTTCCCGCATGCTTGAGACAATACTTGAAaggaaaatatataatt
ttaaccattaacttaaaaaaactttcattttatttctttttaatatttAT
GAATCATTTTGGaatttaaggctcaaaactAAAAACTCTTAGGGTCACGA
GGCTCAATTTGATCAAGGAATTTCTCACAAAAAATGTCTAAATCATTGGA
TAATTATTGGACTTAATATCCTCCAACTTCCAGTAATTATAGCTGaagat
ttaaagatttttatattttactttcCATTTAGGTTGATCATACAATCATT
ACTTATCTTATTGGACCGGACGGAAAattcatcgaatatttcggACAGAA
TCGTGAAATTAATGAAATTGTAGGTTCCATAAGCACTAGAATGGCTTTGT
CTAAGAAAAAATCGTCTTGAGTTGAATAACACATGGAATATTTACTTGTC
TGGAGAACGATTCTATGCTCAAATGTTGCAATTTTGGTACAAGAGGTATg
cggtcaattttttttggcagAGAAAGTAAAAGGCATCAGTGATATTTAGA
GACTTCGTCAAACACTTAAAAGGTCTGGAGTTTTTCGAAAAGGCGATACC
AGCAATACAaggaaattgtcattttgatcATTTGATCGAAATGAATGCTG
AAGGTGTTTACCGATTAACGGAATTGAGTCGTTGATCTTGAAGTGAATTT
CATACTTTGTCAataattgtgaaattttttaatgatattatgcaaaatgt
aaaatatttgtttgccgcttaaaattaattatattattaattttcggaaa
attttttagaaaattaaaaaaaaaagtaatctAGCATACTGTAAATTGAT
TTCTTACCGCCTCATTGAAATtaaacttcaaaatttcaaaaaacatcgTC
ATCAGTtaaatgtcagaaatattttttggtgTGACTTTTGATAGCTTTTA
ACGTTTTAATctgtttaaaaaacaatttgagtTATACTGTAATTCTACTT
TGTTTGGCCCATGAAAAGAATCAACACTAAGGGGCcggctttttgatgat
ttttgatgcgcttaattttgaaagctttttcttgaaactttgtgttacgt
atatattttttttagaaattgagAGAACTGAAAtaacacaaaatcaaaa

Coding sequence (CDS) from alignment at sc0000550:60182..66980+

>TCONS_00025864 ID=TCONS_00025864|Name=TCONS_00025864|organism=Clytia hemisphaerica|type=CDS|length=5112bp|location=Sequence derived from alignment at sc0000550:60182..66980+ (Clytia hemisphaerica)
ATGGCTTTTAAAGTTTTCCAACAGATTCGTTCAATCACAATTATAAGAAA
TCAAAGTCACTCAATTTCAAATCTATTTAACAATTTCTTCCGACATACAC
ATTCACACAACAGCCATTTCCTAAATTCAAAAAGTGGGGAATCTTCGAAA
TTATTGACGATAACAAAAAGAGCTCTATCTGCTGAAGCAAAGAAGAAGAA
ACCCACCAACCGTGGACCAATTGGTTGGGCTTCTCTAGCAGTGTTTATGT
TAACAGGGGGTGGTATAGTTGCTTATGTCCGATATGAAAAAGAGGAGAAA
CGCAAAGCCAAGGAGAAGGAGATGAGAAAATCAGTTGGGATGGCTGCCAT
CGGTGGTCCTTTTGAACTAGTTGATACGAATGGAAAAACTGTCACTGATA
AAGACTTCTTTGGGAAATGGCTTCTTTTATATTTTGGATTCTGTCATTGC
CCAGATATATGTCCTGACCAATTGGAAAAGTTATCTACTGTTGTGGAAAA
AATAGATGCCATACCAAATCTACCGAACGTACAACCTGTCTTTATCACTG
TTGACCCACATCGAGATACTGTGGCTGCTGTCAAAGAATACATTCAAGat
tttcatCCACGAATGGTTGGATTGAGCGGCACGGAAGAACAAGTGAAGAA
GGCCTGTAAAGCGTATCGTGTATATTATTCAGCTGGTCCtaaagatgaag
atgaagactATATCGTTGATCATACAATCATTACTTATCTTATTGGACCG
GACGGAAAattcatcgaatatttcggACAGAATCGTGAAATTAATGAAAT
TGTAGGTTCCATAAGCACTAGAATGGCTTTGTCTAAGAAAAAATCGTCTT
GAATGGCTTTTAAAGTTTTCCAACAGATTCGTTCAATCACAATTATAAGA
AATCAAAGTCACTCAATTTCAAATCTATTTAACAATTTCTTCCGACATAC
ACATTCACACAACAGCCATTTCCTAAATTCAAAAAGTGGGGAATCTTCGA
AATTATTGACGATAACAAAAAGAGCTCTATCTGCTGAAGCAAAGAAGAAG
AAACCCACCAACCGTGGACCAATTGGTTGGGCTTCTCTAGCAGTGTTTAT
GTTAACAGGGGGTGGTATAGTTGCTTATGTCCGATATGAAAAAGAGGAGA
AACGCAAAGCCAAGGAGAAGGAGATGAGAAAATCAGTTGGGATGGCTGCC
ATCGGTGGTCCTTTTGAACTAGTTGATACGAATGGAAAAACTGTCACTGA
TAAAGACTTCTTTGGGAAATGGCTTCTTTTATATTTTGGATTCTGTCATT
GCCCAGATATATGTCCTGACCAATTGGAAAAGTTATCTACTGTTGTGGAA
AAAATAGATGCCATACCAAATCTACCGAACGTACAACCTGTCTTTATCAC
TGTTGACCCACATCGAGATACTGTGGCTGCTGTCAAAGAATACATTCAAG
attttcatCCACGAATGGTTGGATTGAGCGGCACGGAAGAACAAGTGAAG
AAGGCCTGTAAAGCGTATCGTGTATATTATTCAGCTGGTCCtaaagatga
agatgaagactATATCGTTGATCATACAATCATTACTTATCTTATTGGAC
CGGACGGAAAattcatcgaatatttcggACAGAATCGTGAAATTAATGAA
ATTGTAGGTTCCATAAGCACTAGAATGGCTTTGTCTAAGAAAAAATCGTC
TTGAATGGCTTTTAAAGTTTTCCAACAGATTCGTTCAATCACAATTATAA
GAAATCAAAGTCACTCAATTTCAAATCTATTTAACAATTTCTTCCGACAT
ACACATTCACACAACAGCCATTTCCTAAATTCAAAAAGTGGGGAATCTTC
GAAATTATTGACGATAACAAAAAGAGCTCTATCTGCTGAAGCAAAGAAGA
AGAAACCCACCAACCGTGGACCAATTGGTTGGGCTTCTCTAGCAGTGTTT
ATGTTAACAGGGGGTGGTATAGTTGCTTATGTCCGATATGAAAAAGAGGA
GAAACGCAAAGCCAAGGAGAAGGAGATGAGAAAATCAGTTGGGATGGCTG
CCATCGGTGGTCCTTTTGAACTAGTTGATACGAATGGAAAAACTGTCACT
GATAAAGACTTCTTTGGGAAATGGCTTCTTTTATATTTTGGATTCTGTCA
TTGCCCAGATATATGTCCTGACCAATTGGAAAAGTTATCTACTGTTGTGG
AAAAAATAGATGCCATACCAAATCTACCGAACGTACAACCTGTCTTTATC
ACTGTTGACCCACATCGAGATACTGTGGCTGCTGTCAAAGAATACATTCA
AGattttcatCCACGAATGGTTGGATTGAGCGGCACGGAAGAACAAGTGA
AGAAGGCCTGTAAAGCGTATCGTGTATATTATTCAGCTGGTCCtaaagat
gaagatgaagactATATCGTTGATCATACAATCATTACTTATCTTATTGG
ACCGGACGGAAAattcatcgaatatttcggACAGAATCGTGAAATTAATG
AAATTGTAGGTTCCATAAGCACTAGAATGGCTTTGTCTAAGAAAAAATCG
TCTTGAATGGCTTTTAAAGTTTTCCAACAGATTCGTTCAATCACAATTAT
AAGAAATCAAAGTCACTCAATTTCAAATCTATTTAACAATTTCTTCCGAC
ATACACATTCACACAACAGCCATTTCCTAAATTCAAAAAGTGGGGAATCT
TCGAAATTATTGACGATAACAAAAAGAGCTCTATCTGCTGAAGCAAAGAA
GAAGAAACCCACCAACCGTGGACCAATTGGTTGGGCTTCTCTAGCAGTGT
TTATGTTAACAGGGGGTGGTATAGTTGCTTATGTCCGATATGAAAAAGAG
GAGAAACGCAAAGCCAAGGAGAAGGAGATGAGAAAATCAGTTGGGATGGC
TGCCATCGGTGGTCCTTTTGAACTAGTTGATACGAATGGAAAAACTGTCA
CTGATAAAGACTTCTTTGGGAAATGGCTTCTTTTATATTTTGGATTCTGT
CATTGCCCAGATATATGTCCTGACCAATTGGAAAAGTTATCTACTGTTGT
GGAAAAAATAGATGCCATACCAAATCTACCGAACGTACAACCTGTCTTTA
TCACTGTTGACCCACATCGAGATACTGTGGCTGCTGTCAAAGAATACATT
CAAGattttcatCCACGAATGGTTGGATTGAGCGGCACGGAAGAACAAGT
GAAGAAGGCCTGTAAAGCGTATCGTGTATATTATTCAGCTGGTCCtaaag
atgaagatgaagactATATCGTTGATCATACAATCATTACTTATCTTATT
GGACCGGACGGAAAattcatcgaatatttcggACAGAATCGTGAAATTAA
TGAAATTGTAGGTTCCATAAGCACTAGAATGGCTTTGTCTAAGAAAAAAT
CGTCTTGAATGGCTTTTAAAGTTTTCCAACAGATTCGTTCAATCACAATT
ATAAGAAATCAAAGTCACTCAATTTCAAATCTATTTAACAATTTCTTCCG
ACATACACATTCACACAACAGCCATTTCCTAAATTCAAAAAGTGGGGAAT
CTTCGAAATTATTGACGATAACAAAAAGAGCTCTATCTGCTGAAGCAAAG
AAGAAGAAACCCACCAACCGTGGACCAATTGGTTGGGCTTCTCTAGCAGT
GTTTATGTTAACAGGGGGTGGTATAGTTGCTTATGTCCGATATGAAAAAG
AGGAGAAACGCAAAGCCAAGGAGAAGGAGATGAGAAAATCAGTTGGGATG
GCTGCCATCGGTGGTCCTTTTGAACTAGTTGATACGAATGGAAAAACTGT
CACTGATAAAGACTTCTTTGGGAAATGGCTTCTTTTATATTTTGGATTCT
GTCATTGCCCAGATATATGTCCTGACCAATTGGAAAAGTTATCTACTGTT
GTGGAAAAAATAGATGCCATACCAAATCTACCGAACGTACAACCTGTCTT
TATCACTGTTGACCCACATCGAGATACTGTGGCTGCTGTCAAAGAATACA
TTCAAGattttcatCCACGAATGGTTGGATTGAGCGGCACGGAAGAACAA
GTGAAGAAGGCCTGTAAAGCGTATCGTGTATATTATTCAGCTGGTCCtaa
agatgaagatgaagactATATCGTTGATCATACAATCATTACTTATCTTA
TTGGACCGGACGGAAAattcatcgaatatttcggACAGAATCGTGAAATT
AATGAAATTGTAGGTTCCATAAGCACTAGAATGGCTTTGTCTAAGAAAAA
ATCGTCTTGAATGGCTTTTAAAGTTTTCCAACAGATTCGTTCAATCACAA
TTATAAGAAATCAAAGTCACTCAATTTCAAATCTATTTAACAATTTCTTC
CGACATACACATTCACACAACAGCCATTTCCTAAATTCAAAAAGTGGGGA
ATCTTCGAAATTATTGACGATAACAAAAAGAGCTCTATCTGCTGAAGCAA
AGAAGAAGAAACCCACCAACCGTGGACCAATTGGTTGGGCTTCTCTAGCA
GTGTTTATGTTAACAGGGGGTGGTATAGTTGCTTATGTCCGATATGAAAA
AGAGGAGAAACGCAAAGCCAAGGAGAAGGAGATGAGAAAATCAGTTGGGA
TGGCTGCCATCGGTGGTCCTTTTGAACTAGTTGATACGAATGGAAAAACT
GTCACTGATAAAGACTTCTTTGGGAAATGGCTTCTTTTATATTTTGGATT
CTGTCATTGCCCAGATATATGTCCTGACCAATTGGAAAAGTTATCTACTG
TTGTGGAAAAAATAGATGCCATACCAAATCTACCGAACGTACAACCTGTC
TTTATCACTGTTGACCCACATCGAGATACTGTGGCTGCTGTCAAAGAATA
CATTCAAGattttcatCCACGAATGGTTGGATTGAGCGGCACGGAAGAAC
AAGTGAAGAAGGCCTGTAAAGCGTATCGTGTATATTATTCAGCTGGTCCt
aaagatgaagatgaagactATATCGTTGATCATACAATCATTACTTATCT
TATTGGACCGGACGGAAAattcatcgaatatttcggACAGAATCGTGAAA
TTAATGAAATTGTAGGTTCCATAAGCACTAGAATGGCTTTGTCTAAGAAA
AAATCGTCTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_014544XLOC_014544Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00025864-proteinTCONS_00025864-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00025864-exon-sc0000550-1491911889:60182..61728TCONS_00025864-exon-sc0000550-1491911889:60182..61728Clytia hemisphaericaexon
TCONS_00025864-exon-sc0000550-1510915933:60182..61728TCONS_00025864-exon-sc0000550-1510915933:60182..61728Clytia hemisphaericaexon
TCONS_00025864-exon-sc0000550-1575043694:60182..61728TCONS_00025864-exon-sc0000550-1575043694:60182..61728Clytia hemisphaericaexon
TCONS_00025864-exon-sc0000550-1491911889:62154..62388TCONS_00025864-exon-sc0000550-1491911889:62154..62388Clytia hemisphaericaexon
TCONS_00025864-exon-sc0000550-1510915933:62154..62388TCONS_00025864-exon-sc0000550-1510915933:62154..62388Clytia hemisphaericaexon
TCONS_00025864-exon-sc0000550-1575043694:62154..62388TCONS_00025864-exon-sc0000550-1575043694:62154..62388Clytia hemisphaericaexon
TCONS_00025864-exon-sc0000550-1491911889:62879..63076TCONS_00025864-exon-sc0000550-1491911889:62879..63076Clytia hemisphaericaexon
TCONS_00025864-exon-sc0000550-1510915933:62879..63076TCONS_00025864-exon-sc0000550-1510915933:62879..63076Clytia hemisphaericaexon
TCONS_00025864-exon-sc0000550-1575043694:62879..63076TCONS_00025864-exon-sc0000550-1575043694:62879..63076Clytia hemisphaericaexon
TCONS_00025864-exon-sc0000550-1491911889:63581..63673TCONS_00025864-exon-sc0000550-1491911889:63581..63673Clytia hemisphaericaexon
TCONS_00025864-exon-sc0000550-1510915933:63581..63673TCONS_00025864-exon-sc0000550-1510915933:63581..63673Clytia hemisphaericaexon
TCONS_00025864-exon-sc0000550-1575043694:63581..63673TCONS_00025864-exon-sc0000550-1575043694:63581..63673Clytia hemisphaericaexon
TCONS_00025864-exon-sc0000550-1491911889:64356..64471TCONS_00025864-exon-sc0000550-1491911889:64356..64471Clytia hemisphaericaexon
TCONS_00025864-exon-sc0000550-1510915933:64356..64471TCONS_00025864-exon-sc0000550-1510915933:64356..64471Clytia hemisphaericaexon
TCONS_00025864-exon-sc0000550-1575043694:64356..64471TCONS_00025864-exon-sc0000550-1575043694:64356..64471Clytia hemisphaericaexon
TCONS_00025864-exon-sc0000550-1491911889:66114..66980TCONS_00025864-exon-sc0000550-1491911889:66114..66980Clytia hemisphaericaexon
TCONS_00025864-exon-sc0000550-1510915933:66114..66980TCONS_00025864-exon-sc0000550-1510915933:66114..66980Clytia hemisphaericaexon
TCONS_00025864-exon-sc0000550-1575043694:66114..66980TCONS_00025864-exon-sc0000550-1575043694:66114..66980Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000550supercontigsc0000550:60182..66980 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
26.6583	25.027	63.2054	68.8116	29.3101	20.9801	24.2231	26.7005	19.4486	19.7808	15.9396	20.3527	15.6187	17.0909	11.0331	11.9069	17.0948	18.6376	5.8883	5.84095	18.3404	16.2503	23.0859	19.6452	20.2853	23.8485	16.9392	13.1043	20.902	19.7373
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR003782SCO1/SenC
IPR017276Synth_of_cyt-c-oxidase_Sco1/2
IPR013766Thioredoxin_domain
IPR012336Thioredoxin-like_fold
Vocabulary: Biological Process
TermDefinition
GO:0006825copper ion transport
GO:0008535respiratory chain complex IV assembly
GO:0006878cellular copper ion homeostasis
GO:0045454cell redox homeostasis
Vocabulary: Molecular Function
TermDefinition
GO:0005507copper ion binding
Vocabulary: Cellular Component
TermDefinition
GO:0005743mitochondrial inner membrane
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0045454 cell redox homeostasis
biological_process GO:0006878 cellular copper ion homeostasis
biological_process GO:0006825 copper ion transport
biological_process GO:0008535 respiratory chain complex IV assembly
cellular_component GO:0005743 mitochondrial inner membrane
molecular_function GO:0005507 copper ion binding
Blast
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BLAST of TCONS_00025864 vs. Swiss-Prot (Human)
Match: SCO1 (Protein SCO1 homolog, mitochondrial OS=Homo sapiens GN=SCO1 PE=1 SV=1)

HSP 1 Score: 251.521 bits (641), Expect = 4.597e-75
Identity = 115/216 (53.24%), Postives = 162/216 (75.00%), Query Frame = 3 
Query: 1674 KPTNRGPIGWASLAVFMLTGGGIVAYVRYXXXXXXXXXXXXXXXSVGMAAIGGPFELVDTNGKTVTDKDFFGKWLLLYFGFCHCPDICPDQLEKLSTVVEKIDAIPNLPNVQPVFITVDPHRDTVAAVKEYIQDFHPRMVGLSGTEEQVKKACKAYRVYYSAGPKDEDEDYIVDHTIITYLIGPDGKFIEYFGQNREINEIVGSISTRMALSKKKS 2321
            +P+  GP+ W SLA+    GG ++A +++ K+EK +  EKE ++ +G   +GGPF L    G+  TDKD+ G+WLL+YFGF HCPD+CP++LEK+  VV++ID+I  LP++ P+FI++DP RDT  A+  Y+++F P++VGL+GT E+V +  +AYRVYYS GPKDEDEDYIVDHTII YLIGPDG+F++YFGQN+   EI  SI+T M   +KKS
Sbjct:   86 RPSKPGPVSWKSLAITFAIGGALLAGMKHVKKEKAEKLEKERQRHIGKPLLGGPFSLTTHTGERKTDKDYLGQWLLIYFGFTHCPDVCPEELEKMIQVVDEIDSITTLPDLTPLFISIDPERDTKEAIANYVKEFSPKLVGLTGTREEVDQVARAYRVYYSPGPKDEDEDYIVDHTIIMYLIGPDGEFLDYFGQNKRKGEIAASIATHMRPYRKKS 301
The following BLAST results are available for this feature:
BLAST of TCONS_00025864 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SCO14.597e-7553.24Protein SCO1 homolog, mitochondrial OS=Homo sapien... [more]
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