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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00025855 ID=TCONS_00025855|Name=TCONS_00025855|organism=Clytia hemisphaerica|type=transcript|length=2429bp
ctTCTTTTTCAGtgtatttacaaaaaattaaacaaaattcaaatacaatG
AAGTCAGCACTTCTTGGGCATAATGATGATTCACTTCCAAGAAAACGATT
CATGCCTGTTGGACATAAAGGCTCAATTAAGGAACCTTTTTATATCGGTA
AAAGGCAACAAAATCTTccttatttcaaaagttttgaaatgacACAAAAT
AATGAGAACTTGGTTTTATGTGAAGAAGCAAACACTAATCGCAACAATCC
TTATTGCAAATGTATTTTTTCCTTTTACAAACTTGAACTTGACAGAATGG
TATGCtgtaaaaagtttgattactctTCAAGGAACTCTTTTcaatataaa
ttgaataaaaagcgTTCTTTAGTAATTATTGCGTCACTGGATGATAGCGA
AAGATCTATTTCATTGAGCTTTTATAAAATCGATGAAGTTAATGATATAG
GAGAAGCAGTTCAAAGTCCCAAACCACAGGATCTCAACACAAGAATCAAA
ATTGAGAAAGGAAAGGAAAGCATCAATGAGTTCTCCATGGAGCTTTCAGT
TGATGAGAGGAAGTTATGTATCATGGTTGAGGGTGGTGAAGGTGATCAAT
ATTATTGCGATGCTCACTTTTACCAGTGTAATTTCACTCCTGGGAATGGA
TTAACATTagtaaaaatgttttcaatggaTGCTAGCGTCATAGGAGTCGT
CAAAGTAGATCCTGTTGTCTTCAACATGAGCGGTGATAAAATTGCAATGC
TTACAAAGAATGGATTTCTAGTGTATTCCTTGGTCAATCAAAGTGTAATC
GCAAAGCACTCTTTGAAAGATTTCGAATTTCATGAGATCGAATGGTCTTA
TGATTTGGAAAAAGGTGAAATATTGGTTGACTTTGATTATACGGCAAATG
AAATATGTGTTTTTGGTTTTAACAGCATTGAAAAGACTTCAAAGTTATTG
AATACGATTCACATTTCAACATTTGTGGAAGAGTTATCTGAGTTTGAAGC
TTGGAATTCTGGGATCAAAATTTCAACTGGTACTTCGTTCATTATCTTTG
GTGACGAAGATGTATATCTAGTCGATCCTTTTACCGGGCAACTTGTACAA
AAAATAACACCGCCAAAAGACTGGGATAATGTTTTCGTTGACTTTTTTTG
TCTAAATTGGTTTTCAAGCGAAATTTTGATTCTTTATCAGGGNGTTGACT
TTTTTTGTATAAATTGGTTTTCAAGCGAAATTTTGATTCTTTATCAGGGC
GAGAAGGAAAGTTTTTATGGAAAAGTTTGCAAATTGAAAACAGGTTGTGT
TGAATCACTTTTACAATCTGCGATTAAAATTGTGTTGTTGAATTATTCAG
TCAATGACTTGATTGGAATGAACTTACCAAAAACTGTCAAGAGATATTTT
ATTGACTGAAATGAATGTCTGGATGATGGGCGATTAGATCATTAAAACCA
GTTGTTGAGTTTTCtatccaacttttttttttaatcttttaaatAACAGG
AACTGATTTTTCGCGGTATTCAAGCCTGTTCTAaaaaaaatggtagattt
tgatacattgctctgtgaagaaaaaaagaaaaagcctggagttccttatt
tttacagagaatttcagcctaaaagttccttatcgagttccttatttaca
tagctgctaagtttggataatcctttcttactgttccttaaaacttgatt
tcttattctcagcctgagcagttccttaacaattccttattttttggacc
attttcagcctcgagttccttataaacgtgttccttataaaaaaaaaaaa
gtgtaatataaaaattttaagtttagtaCTACCCCTTCAATATTGTAGAT
AATTCACTtcggaaatatctttcaaatcgTGTTTAACCTTTCGGATAAAT
CGTTTTGCCACATattttcgagacagactttaatttatATTGAGTTATTA
TGCTTGAGTTAAGTTTTTTGCATTCTTATTTATCGGGAAATTTATCAGAT
GCAACTAAATCACTAACGGACCCAAATGTTGTCAATTCTATGGAgtttat
attttgataattttatagtattttgtattatttatttttgaccCAATTAT
ATTAATTTATAATTTGCTATTTAAAATAGAGCTTGTTCGAGTTTAATTTA
TTTGAGTTTATTTATTGGAAAAAATGAGGGCCAGATTATGTGCACCGATG
AAATATtatcttgaaattcatttcaactgggttttaaggtgttttttttt
tgctcagtgaaatatttgaaattatacgggaaaatcgggtcgaggctcaa
tatgcttagcaaaatcacattttcagcctcaatttGTGCTCATTTATTAT
GCTTAGACttcgatttgttgattttctttgggttcatGGAAATTTCGAAT
CTTTAAGTCGGAACAAAGATGTAAAtcag Run BLAST on NCBI protein sequence of TCONS_00025855-protein >TCONS_00025855-protein ID=TCONS_00025855-protein|Name=TCONS_00025855-protein|organism=Clytia hemisphaerica|type=polypeptide|length=468bp
SFSVYLQKIKQNSNTMKSALLGHNDDSLPRKRFMPVGHKGSIKEPFYIGK
RQQNLPYFKSFEMTQNNENLVLCEEANTNRNNPYCKCIFSFYKLELDRMV
CCKKFDYSSRNSFQYKLNKKRSLVIIASLDDSERSISLSFYKIDEVNDIG
EAVQSPKPQDLNTRIKIEKGKESINEFSMELSVDERKLCIMVEGGEGDQY
YCDAHFYQCNFTPGNGLTLVKMFSMDASVIGVVKVDPVVFNMSGDKIAML
TKNGFLVYSLVNQSVIAKHSLKDFEFHEIEWSYDLEKGEILVDFDYTANE
ICVFGFNSIEKTSKLLNTIHISTFVEELSEFEAWNSGIKISTGTSFIIFG
DEDVYLVDPFTGQLVQKITPPKDWDNVFVDFFCLNWFSSEILILYQXVDF
FCINWFSSEILILYQGEKESFYGKVCKLKTGCVESLLQSAIKIVLLNYSV
NDLIGMNLPKTVKRYFID Run BLAST on NCBI transcript from alignment at sc0000549:92895..95323 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00025855 ID=TCONS_00025855|Name=TCONS_00025855|organism=Clytia hemisphaerica|type=transcript|length=2429bp|location=Sequence derived from alignment at sc0000549:92895..95323 (Clytia hemisphaerica)
ctgaTTTACATCTTTGTTCCGACTTAAAGATTCGAAATTTCCatgaaccc
aaagaaaatcaacaaatcgaaGTCTAAGCATAATAAATGAGCACaaattg
aggctgaaaatgtgattttgctaagcatattgagcctcgacccgattttc
ccgtataatttcaaatatttcactgagcaaaaaaaaaacaccttaaaacc
cagttgaaatgaatttcaagataATATTTCATCGGTGCACATAATCTGGC
CCTCATTTTTTCCAATAAATAAACTCAAATAAATTAAACTCGAACAAGCT
CTATTTTAAATAGCAAATTATAAATTAATATAATTGggtcaaaaataaat
aatacaaaatactataaaattatcaaaatataaacTCCATAGAATTGACA
ACATTTGGGTCCGTTAGTGATTTAGTTGCATCTGATAAATTTCCCGATAA
ATAAGAATGCAAAAAACTTAACTCAAGCATAATAACTCAATataaattaa
agtctgtctcgaaaatATGTGGCAAAACGATTTATCCGAAAGGTTAAACA
cgatttgaaagatatttccgaAGTGAATTATCTACAATATTGAAGGGGTA
Gtactaaacttaaaatttttatattacacttttttttttttataaggaac
acgtttataaggaactcgaggctgaaaatggtccaaaaaataaggaattg
ttaaggaactgctcaggctgagaataagaaatcaagttttaaggaacagt
aagaaaggattatccaaacttagcagctatgtaaataaggaactcgataa
ggaacttttaggctgaaattctctgtaaaaataaggaactccaggctttt
tctttttttcttcacagagcaatgtatcaaaatctaccatttttttTAGA
ACAGGCTTGAATACCGCGAAAAATCAGTTCCTGTTatttaaaagattaaa
aaaaaaagttggataGAAAACTCAACAACTGGTTTTAATGATCTAATCGC
CCATCATCCAGACATTCATTTCAGTCAATAAAATATCTCTTGACAGTTTT
TGGTAAGTTCATTCCAATCAAGTCATTGACTGAATAATTCAACAACACAA
TTTTAATCGCAGATTGTAAAAGTGATTCAACACAACCTGTTTTCAATTTG
CAAACTTTTCCATAAAAACTTTCCTTCTCGCCCTGATAAAGAATCAAAAT
TTCGCTTGAAAACCAATTTATACAAAAAAAGTCAACNCCCTGATAAAGAA
TCAAAATTTCGCTTGAAAACCAATTTAGACAAAAAAAGTCAACGAAAACA
TTATCCCAGTCTTTTGGCGGTGTTATTTTTTGTACAAGTTGCCCGGTAAA
AGGATCGACTAGATATACATCTTCGTCACCAAAGATAATGAACGAAGTAC
CAGTTGAAATTTTGATCCCAGAATTCCAAGCTTCAAACTCAGATAACTCT
TCCACAAATGTTGAAATGTGAATCGTATTCAATAACTTTGAAGTCTTTTC
AATGCTGTTAAAACCAAAAACACATATTTCATTTGCCGTATAATCAAAGT
CAACCAATATTTCACCTTTTTCCAAATCATAAGACCATTCGATCTCATGA
AATTCGAAATCTTTCAAAGAGTGCTTTGCGATTACACTTTGATTGACCAA
GGAATACACTAGAAATCCATTCTTTGTAAGCATTGCAATTTTATCACCGC
TCATGTTGAAGACAACAGGATCTACTTTGACGACTCCTATGACGCTAGCA
tccattgaaaacatttttactAATGTTAATCCATTCCCAGGAGTGAAATT
ACACTGGTAAAAGTGAGCATCGCAATAATATTGATCACCTTCACCACCCT
CAACCATGATACATAACTTCCTCTCATCAACTGAAAGCTCCATGGAGAAC
TCATTGATGCTTTCCTTTCCTTTCTCAATTTTGATTCTTGTGTTGAGATC
CTGTGGTTTGGGACTTTGAACTGCTTCTCCTATATCATTAACTTCATCGA
TTTTATAAAAGCTCAATGAAATAGATCTTTCGCTATCATCCAGTGACGCA
ATAATTACTAAAGAAcgctttttattcaatttatattgAAAAGAGTTCCT
TGAagagtaatcaaactttttacaGCATACCATTCTGTCAAGTTCAAGTT
TGTAAAAGGAAAAAATACATTTGCAATAAGGATTGTTGCGATTAGTGTTT
GCTTCTTCACATAAAACCAAGTTCTCATTATTTTGTgtcatttcaaaact
tttgaaataaggAAGATTTTGTTGCCTTTTACCGATATAAAAAGGTTCCT
TAATTGAGCCTTTATGTCCAACAGGCATGAATCGTTTTCTTGGAAGTGAA
TCATCATTATGCCCAAGAAGTGCTGACTTCattgtatttgaattttgttt
aattttttgtaaatacaCTGAAAAAGAag Coding sequence (CDS) from alignment at sc0000549:92895..95323 >TCONS_00025855 ID=TCONS_00025855|Name=TCONS_00025855|organism=Clytia hemisphaerica|type=CDS|length=1407bp|location=Sequence derived from alignment at sc0000549:92895..95323 (Clytia hemisphaerica)
TCAGTCAATAAAATATCTCTTGACAGTTTTTGGTAAGTTCATTCCAATCA
AGTCATTGACTGAATAATTCAACAACACAATTTTAATCGCAGATTGTAAA
AGTGATTCAACACAACCTGTTTTCAATTTGCAAACTTTTCCATAAAAACT
TTCCTTCTCGCCCTGATAAAGAATCAAAATTTCGCTTGAAAACCAATTTA
TACAAAAAAAGTCAACNCCCTGATAAAGAATCAAAATTTCGCTTGAAAAC
CAATTTAGACAAAAAAAGTCAACGAAAACATTATCCCAGTCTTTTGGCGG
TGTTATTTTTTGTACAAGTTGCCCGGTAAAAGGATCGACTAGATATACAT
CTTCGTCACCAAAGATAATGAACGAAGTACCAGTTGAAATTTTGATCCCA
GAATTCCAAGCTTCAAACTCAGATAACTCTTCCACAAATGTTGAAATGTG
AATCGTATTCAATAACTTTGAAGTCTTTTCAATGCTGTTAAAACCAAAAA
CACATATTTCATTTGCCGTATAATCAAAGTCAACCAATATTTCACCTTTT
TCCAAATCATAAGACCATTCGATCTCATGAAATTCGAAATCTTTCAAAGA
GTGCTTTGCGATTACACTTTGATTGACCAAGGAATACACTAGAAATCCAT
TCTTTGTAAGCATTGCAATTTTATCACCGCTCATGTTGAAGACAACAGGA
TCTACTTTGACGACTCCTATGACGCTAGCAtccattgaaaacatttttac
tAATGTTAATCCATTCCCAGGAGTGAAATTACACTGGTAAAAGTGAGCAT
CGCAATAATATTGATCACCTTCACCACCCTCAACCATGATACATAACTTC
CTCTCATCAACTGAAAGCTCCATGGAGAACTCATTGATGCTTTCCTTTCC
TTTCTCAATTTTGATTCTTGTGTTGAGATCCTGTGGTTTGGGACTTTGAA
CTGCTTCTCCTATATCATTAACTTCATCGATTTTATAAAAGCTCAATGAA
ATAGATCTTTCGCTATCATCCAGTGACGCAATAATTACTAAAGAAcgctt
tttattcaatttatattgAAAAGAGTTCCTTGAagagtaatcaaactttt
tacaGCATACCATTCTGTCAAGTTCAAGTTTGTAAAAGGAAAAAATACAT
TTGCAATAAGGATTGTTGCGATTAGTGTTTGCTTCTTCACATAAAACCAA
GTTCTCATTATTTTGTgtcatttcaaaacttttgaaataaggAAGATTTT
GTTGCCTTTTACCGATATAAAAAGGTTCCTTAATTGAGCCTTTATGTCCA
ACAGGCATGAATCGTTTTCTTGGAAGTGAATCATCATTATGCCCAAGAAG
TGCTGACTTCattgtatttgaattttgtttaattttttgtaaatacaCTG
AAAAAGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00025855-exon-sc0000549-1491911889:92895..95323 | TCONS_00025855-exon-sc0000549-1491911889:92895..95323 | Clytia hemisphaerica | exon |
| TCONS_00025855-exon-sc0000549-1510915933:92895..95323 | TCONS_00025855-exon-sc0000549-1510915933:92895..95323 | Clytia hemisphaerica | exon |
| TCONS_00025855-exon-sc0000549-1575043694:92895..95323 | TCONS_00025855-exon-sc0000549-1575043694:92895..95323 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000549 | supercontig | sc0000549:92895..95323 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR015943 | WD40/YVTN_repeat-like_dom |
| IPR011047 | Quinoprotein_ADH-like_supfam |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005515 | protein binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0005515 |
protein binding |
Blast
The following BLAST results are available for this feature:
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