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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00025852 ID=TCONS_00025852|Name=TCONS_00025852|organism=Clytia hemisphaerica|type=transcript|length=837bp
CGACTCGGTATGTGCACCACTCGTGAGCCAAAGCATCTGGAGTCATTTTG
CATTTGCATTCGAGGTTCCGATTATGTGGATTTTCTTTCCGTTGACCAAA
GATGGTTTTCCCGTAAACATGGTTTAGCTTAGTGCAAGTGAAAGTGTCCC
TACAAATAGCCTTTGTTTGTTTATTATAGAAATCCAAGATTTGATTGTTG
ATAAATTTTGCATAATCAGCAAGCTCTTCTGGAATGACCATGCCAAGTTT
TAAAATGCGAACATAGTctttcatttttcctttttcagctTTTAAACTAT
CGATCAACGAGCGTAAAACAAGGAGTGTCAGGAAGGAATATTCTCGAATG
GTAACAAATTGAAACTCGAGTCTTTTCAGTTCTTGATGATTTGGACTTTT
ACCCTTGAATAACATAAAATGAGAGCGATCTCTACGAATGGATAAGAAAG
CTCTTCTTTGACATTCATTGACTTCACTCTCTTTGTGGTAAATGACAACG
CAGTTAGCCCATCCATTCAGCAATGCATGGTATTGTCTTTGAACCCATTC
GCTCTCTGTTTGCACAATTCGATCATCAACATAacctttcatttcattca
ttCGCTTGGTGATctcttgagcaaatttcttgaAAGCCACATTGACAGCA
TCAACAGCATCTTGAGCTGAAGGAGCTTTCCCAATGAATCCAAGAGCTCC
ACTCAAAGCGCCTAACCACGGAGCCATTTTTGAAGCCGttttaaagaact
ttccaaACTTTGCGAACTCTGCTGTCACTTTAGGAGCAATTTTGCCAGCA
TCTCCAGTATTTTTGGCACCTTTAGCAATCACACCGA Run BLAST on NCBI protein sequence of TCONS_00025852-protein >TCONS_00025852-protein ID=TCONS_00025852-protein|Name=TCONS_00025852-protein|organism=Clytia hemisphaerica|type=polypeptide|length=278bp
GVIAKGAKNTGDAGKIAPKVTAEFAKFGKFFKTASKMAPWLGALSGALGF
IGKAPSAQDAVDAVNVAFKKFAQEITKRMNEMKGYVDDRIVQTESEWVQR
QYHALLNGWANCVVIYHKESEVNECQRRAFLSIRRDRSHFMLFKGKSPNH
QELKRLEFQFVTIREYSFLTLLVLRSLIDSLKAEKGKMKDYVRILKLGMV
IPEELADYAKFINNQILDFYNKQTKAICRDTFTCTKLNHVYGKTIFGQRK
ENPHNRNLECKCKMTPDALAHEWCTYRV Run BLAST on NCBI transcript from alignment at sc0000549:54768..55604 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00025852 ID=TCONS_00025852|Name=TCONS_00025852|organism=Clytia hemisphaerica|type=transcript|length=837bp|location=Sequence derived from alignment at sc0000549:54768..55604 (Clytia hemisphaerica)
TCGGTGTGATTGCTAAAGGTGCCAAAAATACTGGAGATGCTGGCAAAATT
GCTCCTAAAGTGACAGCAGAGTTCGCAAAGTttggaaagttctttaaaaC
GGCTTCAAAAATGGCTCCGTGGTTAGGCGCTTTGAGTGGAGCTCTTGGAT
TCATTGGGAAAGCTCCTTCAGCTCAAGATGCTGTTGATGCTGTCAATGTG
GCTTtcaagaaatttgctcaagagATCACCAAGCGaatgaatgaaatgaa
aggtTATGTTGATGATCGAATTGTGCAAACAGAGAGCGAATGGGTTCAAA
GACAATACCATGCATTGCTGAATGGATGGGCTAACTGCGTTGTCATTTAC
CACAAAGAGAGTGAAGTCAATGAATGTCAAAGAAGAGCTTTCTTATCCAT
TCGTAGAGATCGCTCTCATTTTATGTTATTCAAGGGTAAAAGTCCAAATC
ATCAAGAACTGAAAAGACTCGAGTTTCAATTTGTTACCATTCGAGAATAT
TCCTTCCTGACACTCCTTGTTTTACGCTCGTTGATCGATAGTTTAAAagc
tgaaaaaggaaaaatgaaagACTATGTTCGCATTTTAAAACTTGGCATGG
TCATTCCAGAAGAGCTTGCTGATTATGCAAAATTTATCAACAATCAAATC
TTGGATTTCTATAATAAACAAACAAAGGCTATTTGTAGGGACACTTTCAC
TTGCACTAAGCTAAACCATGTTTACGGGAAAACCATCTTTGGTCAACGGA
AAGAAAATCCACATAATCGGAACCTCGAATGCAAATGCAAAATGACTCCA
GATGCTTTGGCTCACGAGTGGTGCACATACCGAGTCG Coding sequence (CDS) from alignment at sc0000549:54768..55604 >TCONS_00025852 ID=TCONS_00025852|Name=TCONS_00025852|organism=Clytia hemisphaerica|type=CDS|length=834bp|location=Sequence derived from alignment at sc0000549:54768..55604 (Clytia hemisphaerica)
GGTGTGATTGCTAAAGGTGCCAAAAATACTGGAGATGCTGGCAAAATTGC
TCCTAAAGTGACAGCAGAGTTCGCAAAGTttggaaagttctttaaaaCGG
CTTCAAAAATGGCTCCGTGGTTAGGCGCTTTGAGTGGAGCTCTTGGATTC
ATTGGGAAAGCTCCTTCAGCTCAAGATGCTGTTGATGCTGTCAATGTGGC
TTtcaagaaatttgctcaagagATCACCAAGCGaatgaatgaaatgaaag
gtTATGTTGATGATCGAATTGTGCAAACAGAGAGCGAATGGGTTCAAAGA
CAATACCATGCATTGCTGAATGGATGGGCTAACTGCGTTGTCATTTACCA
CAAAGAGAGTGAAGTCAATGAATGTCAAAGAAGAGCTTTCTTATCCATTC
GTAGAGATCGCTCTCATTTTATGTTATTCAAGGGTAAAAGTCCAAATCAT
CAAGAACTGAAAAGACTCGAGTTTCAATTTGTTACCATTCGAGAATATTC
CTTCCTGACACTCCTTGTTTTACGCTCGTTGATCGATAGTTTAAAagctg
aaaaaggaaaaatgaaagACTATGTTCGCATTTTAAAACTTGGCATGGTC
ATTCCAGAAGAGCTTGCTGATTATGCAAAATTTATCAACAATCAAATCTT
GGATTTCTATAATAAACAAACAAAGGCTATTTGTAGGGACACTTTCACTT
GCACTAAGCTAAACCATGTTTACGGGAAAACCATCTTTGGTCAACGGAAA
GAAAATCCACATAATCGGAACCTCGAATGCAAATGCAAAATGACTCCAGA
TGCTTTGGCTCACGAGTGGTGCACATACCGAGTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00025852-exon-sc0000549-1491911889:54768..55604 | TCONS_00025852-exon-sc0000549-1491911889:54768..55604 | Clytia hemisphaerica | exon |
| TCONS_00025852-exon-sc0000549-1510915933:54768..55604 | TCONS_00025852-exon-sc0000549-1510915933:54768..55604 | Clytia hemisphaerica | exon |
| TCONS_00025852-exon-sc0000549-1575043694:54768..55604 | TCONS_00025852-exon-sc0000549-1575043694:54768..55604 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000549 | supercontig | sc0000549:54768..55604 . |
Blast
The following BLAST results are available for this feature:
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