TCONS_00025850 (transcript) - C. hemisphaerica

Overview
NameTCONS_00025850
Unique NameTCONS_00025850
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length549

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00025850 ID=TCONS_00025850|Name=TCONS_00025850|organism=Clytia hemisphaerica|type=transcript|length=549bp
CCAAGATTGAAAAAGCAATTGACGATTGACCGTGTAAAAAGCCTTGGTGA
AGTCTATAAAAGCAATGTATAAATCTCGATGTTGTTCCCTACTTTTCTCC
ATAATTTGCCTCACTGTGAAAATTCCATCGATCGTACCACGACCTTCACG
ATAGCCTCGCTGTGAATCAGGGTAAACTCTACGTGCAAGAGAAATCAGTC
TTTGCAAAATCATATCGGCAAGAAACTTTCCAACGACACTTCCCACGATA
ATTCCCACATTGACTACGGTATCCTTTCTTGAACAGAATCGTGATGTTTG
GGTTAACGAGATCTGACGGTAGAATTTCTGTAATCCAGAATAAGTTGAAG
AAAGTTAgaaggtaatttttcaaagcattGCCTCCATACTTGATGGTTTC
TGGTAGGATACTGTCTGGTCCTGGACTTTTTCCTGACTTCATGTTTTCAA
TCGCTTTATCAAACTCTATCTCCTTGAACGGTTCATCGAGTGATTCGTCA
ATTGGTATTTGATCGATTTCATTTAGAACTTCCATGTCTGCATCAGTTT
Run BLAST on NCBI

protein sequence of TCONS_00025850-protein

>TCONS_00025850-protein ID=TCONS_00025850-protein|Name=TCONS_00025850-protein|organism=Clytia hemisphaerica|type=polypeptide|length=122bp
TDADMEVLNEIDQIPIDESLDEPFKEIEFDKAIENMKSGKSPGPDSILPE
TIKYGGNALKNYLLTFFNLFWITEILPSDLVNPNITILFKKGYRSQCGNY
RGKCRWKVSCRYDFAKTDFSCT
Run BLAST on NCBI

transcript from alignment at sc0000549:42810..43358

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00025850 ID=TCONS_00025850|Name=TCONS_00025850|organism=Clytia hemisphaerica|type=transcript|length=549bp|location=Sequence derived from alignment at sc0000549:42810..43358 (Clytia hemisphaerica)
AAACTGATGCAGACATGGAAGTTCTAAATGAAATCGATCAAATACCAATT
GACGAATCACTCGATGAACCGTTCAAGGAGATAGAGTTTGATAAAGCGAT
TGAAAACATGAAGTCAGGAAAAAGTCCAGGACCAGACAGTATCCTACCAG
AAACCATCAAGTATGGAGGCaatgctttgaaaaattaccttcTAACTTTC
TTCAACTTATTCTGGATTACAGAAATTCTACCGTCAGATCTCGTTAACCC
AAACATCACGATTCTGTTCAAGAAAGGATACCGTAGTCAATGTGGGAATT
ATCGTGGGAAGTGTCGTTGGAAAGTTTCTTGCCGATATGATTTTGCAAAG
ACTGATTTCTCTTGCACGTAGAGTTTACCCTGATTCACAGCGAGGCTATC
GTGAAGGTCGTGGTACGATCGATGGAATTTTCACAGTGAGGCAAATTATG
GAGAAAAGTAGGGAACAACATCGAGATTTATACATTGCTTTTATAGACTT
CACCAAGGCTTTTTACACGGTCAATCGTCAATTGCTTTTTCAATCTTGG

Coding sequence (CDS) from alignment at sc0000549:42810..43358

>TCONS_00025850 ID=TCONS_00025850|Name=TCONS_00025850|organism=Clytia hemisphaerica|type=CDS|length=369bp|location=Sequence derived from alignment at sc0000549:42810..43358 (Clytia hemisphaerica)
ACTGATGCAGACATGGAAGTTCTAAATGAAATCGATCAAATACCAATTGA
CGAATCACTCGATGAACCGTTCAAGGAGATAGAGTTTGATAAAGCGATTG
AAAACATGAAGTCAGGAAAAAGTCCAGGACCAGACAGTATCCTACCAGAA
ACCATCAAGTATGGAGGCaatgctttgaaaaattaccttcTAACTTTCTT
CAACTTATTCTGGATTACAGAAATTCTACCGTCAGATCTCGTTAACCCAA
ACATCACGATTCTGTTCAAGAAAGGATACCGTAGTCAATGTGGGAATTAT
CGTGGGAAGTGTCGTTGGAAAGTTTCTTGCCGATATGATTTTGCAAAGAC
TGATTTCTCTTGCACGTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_014531XLOC_014531Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00025850-proteinTCONS_00025850-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00025850-exon-sc0000549-1491911889:42810..43358TCONS_00025850-exon-sc0000549-1491911889:42810..43358Clytia hemisphaericaexon
TCONS_00025850-exon-sc0000549-1510915933:42810..43358TCONS_00025850-exon-sc0000549-1510915933:42810..43358Clytia hemisphaericaexon
TCONS_00025850-exon-sc0000549-1575043694:42810..43358TCONS_00025850-exon-sc0000549-1575043694:42810..43358Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000549supercontigsc0000549:42810..43358 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.104346	0.203508	0	0.180974	0.703584	1.33436	0.536615	0.732132	0.606268	1.04686	0.239518	0.73698	0.260728	0.15687	0.229161	0.237792	0.333811	0.320148	1.53745	0.800402	0.409608	0.656429	0.172293	0.398227	0.112032	0	0	0.472167	0.701478	0.360067
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00025850 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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